Wall clock time and date at job start Wed Apr 1 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 117.00209 * 2 1 4 4 C 1.39072 * 119.88564 * 180.02562 * 3 2 1 5 5 C 1.37123 * 120.11651 * 180.02562 * 4 3 2 6 6 C 1.40036 * 119.87926 * 359.97438 * 5 4 3 7 7 C 1.46860 * 120.11345 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00091 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.46954 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46931 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46931 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46954 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00006 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00062 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00113 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00098 * 17.72071 * 16 15 13 18 18 C 1.38955 * 120.00069 * 197.72044 * 16 15 13 19 19 N 1.31414 * 119.99756 * 21.39852 * 18 16 15 20 20 Si 1.86803 * 119.99843 * 201.39800 * 18 16 15 21 21 H 1.48495 * 109.47192 * 60.00181 * 20 18 16 22 22 H 1.48498 * 109.46731 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47026 * 299.99931 * 20 18 16 24 24 C 1.46507 * 119.99924 * 359.97438 * 15 13 12 25 25 C 1.47202 * 109.46977 * 84.23165 * 24 15 13 26 26 N 9.45535 * 153.03768 * 145.25054 * 6 1 2 27 27 C 1.40042 * 119.77645 * 0.27715 * 6 5 4 28 28 C 1.37125 * 119.87969 * 359.46533 * 27 6 5 29 29 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46614 * 299.99135 * 1 2 3 31 31 H 1.08994 * 109.47129 * 59.99609 * 1 2 3 32 32 H 1.08005 * 119.94644 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.05923 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46618 * 300.00009 * 9 7 6 35 35 H 1.08994 * 109.47472 * 59.99800 * 9 7 6 36 36 H 1.09000 * 109.47045 * 299.99854 * 10 9 7 37 37 H 1.09005 * 109.47285 * 59.99921 * 10 9 7 38 38 H 1.09000 * 109.47331 * 299.99917 * 11 10 9 39 39 H 1.08997 * 109.47183 * 60.00216 * 11 10 9 40 40 H 1.09000 * 109.47045 * 300.00092 * 12 11 10 41 41 H 1.09005 * 109.47285 * 60.00159 * 12 11 10 42 42 H 0.96997 * 119.99559 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46638 * 204.23224 * 24 15 13 44 44 H 1.09001 * 109.46923 * 324.23370 * 24 15 13 45 45 H 1.07997 * 120.06110 * 179.69685 * 27 6 5 46 46 H 1.07993 * 119.94423 * 180.25367 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4339 1.2787 -0.0005 5 6 4.0614 2.4979 0.0000 6 6 3.3010 3.6739 0.0005 7 6 3.9677 4.9824 0.0017 8 8 5.1790 5.0459 0.0017 9 6 3.1469 6.2463 0.0028 10 6 4.0790 7.4597 0.0032 11 6 3.2456 8.7428 0.0038 12 6 4.1777 9.9562 0.0048 13 6 3.3569 11.2201 0.0060 14 8 2.1456 11.1566 0.0055 15 7 3.9688 12.4210 0.0065 16 6 3.2221 13.5707 0.0070 17 1 2.1808 13.5382 0.2917 18 6 3.8050 14.7779 -0.3587 19 7 4.8977 14.7853 -1.0888 20 14 3.0354 16.3900 0.1873 21 1 2.9995 16.4440 1.6708 22 1 3.8424 17.5240 -0.3304 23 1 1.6523 16.4836 -0.3452 24 6 5.4318 12.4976 0.0065 25 6 5.9290 12.3846 -1.3744 26 7 6.3134 12.2973 -2.4418 27 6 1.9027 3.5979 0.0064 28 6 1.2850 2.3736 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 4.0195 0.3712 -0.0014 33 1 5.1401 2.5512 0.0000 34 1 2.5181 6.2719 -0.8871 35 1 2.5181 6.2704 0.8928 36 1 4.7081 7.4342 0.8929 37 1 4.7075 7.4354 -0.8871 38 1 2.6168 8.7681 -0.8862 39 1 2.6169 8.7674 0.8938 40 1 4.8062 9.9307 0.8950 41 1 4.8068 9.9319 -0.8851 42 1 5.3048 15.6280 -1.3437 43 1 5.7455 13.4523 0.4287 44 1 5.8383 11.6837 0.6068 45 1 1.3118 4.5018 0.0118 46 1 0.2068 2.3138 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353816318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:17 Heat of formation + Delta-G solvation = -59.738574 kcal Electronic energy + Delta-G solvation = -27945.702897 eV Core-core repulsion = 23801.169953 eV Total energy + Delta-G solvation = -4144.532944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.79151 -39.60465 -38.85549 -37.43302 -35.87792 -34.93335 -34.18809 -32.11221 -31.80701 -31.07416 -30.12969 -28.03429 -27.41272 -26.01400 -24.40617 -23.47403 -22.59075 -21.04324 -19.87372 -18.91811 -18.72093 -17.87236 -16.85466 -16.66662 -16.43627 -16.29891 -16.10607 -15.84509 -15.21788 -14.89103 -14.68275 -14.58791 -14.22382 -14.07051 -13.83687 -13.54102 -13.21711 -13.00552 -12.95045 -12.88359 -12.42952 -12.38366 -12.10916 -11.86821 -11.64753 -11.54744 -11.45383 -11.29893 -11.24052 -11.10503 -11.03350 -10.82339 -10.55269 -10.41753 -10.32873 -10.20365 -9.76998 -9.55704 -9.22865 -8.69157 -8.54183 -8.01636 -6.48122 -3.97302 0.38601 0.92809 2.19442 2.70929 3.13498 3.22764 3.25189 3.41622 3.58806 3.80902 3.85655 4.00769 4.14017 4.23813 4.37824 4.56325 4.62927 4.75188 4.79850 4.89212 4.90603 4.93991 4.97767 5.04735 5.08144 5.21710 5.26711 5.45139 5.53431 5.54398 5.62101 5.69912 5.74681 5.84805 5.90962 6.02276 6.05986 6.10839 6.19395 6.21359 6.26316 6.52834 6.57494 6.69011 6.82076 7.42122 7.49011 7.93842 8.31135 8.77236 9.03370 9.23242 9.78333 10.58084 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.001646 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.953622 B =17003.560394 C =17873.676131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.156 3.844 4 C -0.167 4.167 5 C -0.022 4.022 6 C -0.209 4.209 7 C 0.398 3.602 8 O -0.455 6.455 9 C -0.166 4.166 10 C -0.112 4.112 11 C -0.098 4.098 12 C -0.136 4.136 13 C 0.456 3.544 14 O -0.576 6.576 15 N -0.446 5.446 16 C -0.315 4.315 17 H 0.107 0.893 18 C 0.031 3.969 19 N -0.878 5.878 20 Si 0.927 3.073 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.222 3.778 25 C 0.246 3.754 26 N -0.475 5.475 27 C -0.029 4.029 28 C -0.223 4.223 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.273 0.727 43 H 0.126 0.874 44 H 0.085 0.915 45 H 0.138 0.862 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -25.540 6.062 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.110 3.890 4 C -0.185 4.185 5 C -0.040 4.040 6 C -0.210 4.210 7 C 0.276 3.724 8 O -0.330 6.330 9 C -0.203 4.203 10 C -0.149 4.149 11 C -0.136 4.136 12 C -0.177 4.177 13 C 0.245 3.755 14 O -0.459 6.459 15 N -0.166 5.166 16 C -0.442 4.442 17 H 0.125 0.875 18 C -0.172 4.172 19 N -0.517 5.517 20 Si 0.753 3.247 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.199 1.199 24 C 0.094 3.906 25 C -0.072 4.072 26 N -0.155 5.155 27 C -0.047 4.047 28 C -0.242 4.242 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.156 0.844 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.144 -25.691 4.407 26.394 hybrid contribution -0.766 1.152 0.407 1.442 sum -4.910 -24.539 4.814 25.484 Atomic orbital electron populations 1.23151 0.77787 1.04348 1.01794 1.86040 1.21939 1.26990 1.87709 1.19420 0.92469 0.84280 0.92812 1.20305 0.91269 0.98945 1.08003 1.21144 1.00717 0.90433 0.91719 1.20536 0.94292 0.95295 1.10854 1.22444 0.89181 0.89756 0.71004 1.90530 1.16417 1.89656 1.36411 1.22063 1.00085 0.93452 1.04700 1.21464 0.97615 0.92638 1.03200 1.21266 0.97406 0.91606 1.03315 1.21618 0.99112 0.94009 1.02947 1.20232 0.88554 0.84438 0.82285 1.90524 1.14331 1.86709 1.54339 1.43665 1.03238 1.05571 1.64164 1.19664 0.96888 0.83198 1.44405 0.87512 1.25272 0.96912 0.99927 0.95138 1.69858 1.21615 1.28106 1.32138 0.85978 0.79068 0.80433 0.79174 1.19737 1.21049 1.19883 1.18729 0.82425 1.04219 0.85193 1.29414 0.92250 0.90008 0.95524 1.80973 1.10159 1.12577 1.11756 1.21200 0.93421 0.97805 0.92281 1.21134 1.00502 0.92177 1.10364 0.87946 0.92223 0.92226 0.84590 0.84141 0.88269 0.88223 0.91361 0.91447 0.91452 0.91299 0.90045 0.90411 0.91619 0.85599 0.89765 0.84378 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.80 101.05 0.99 1.08 16 2 O -0.31 -2.38 10.48 -18.69 -0.20 -2.57 16 3 C 0.16 1.28 6.70 -38.96 -0.26 1.02 16 4 C -0.17 -1.40 9.95 -39.68 -0.39 -1.79 16 5 C -0.02 -0.20 9.57 -39.31 -0.38 -0.58 16 6 C -0.21 -2.00 5.87 -105.06 -0.62 -2.62 16 7 C 0.40 4.41 7.11 -30.82 -0.22 4.19 16 8 O -0.45 -6.43 15.97 5.55 0.09 -6.34 16 9 C -0.17 -1.62 4.30 -27.88 -0.12 -1.74 16 10 C -0.11 -1.37 4.50 -26.73 -0.12 -1.49 16 11 C -0.10 -1.44 4.50 -26.73 -0.12 -1.56 16 12 C -0.14 -2.30 4.30 -27.88 -0.12 -2.42 16 13 C 0.46 10.19 7.57 -10.98 -0.08 10.10 16 14 O -0.58 -14.78 15.63 5.55 0.09 -14.69 16 15 N -0.45 -10.38 2.60 -117.93 -0.31 -10.69 16 16 C -0.31 -8.11 9.32 -14.93 -0.14 -8.25 16 17 H 0.11 2.90 7.39 -52.49 -0.39 2.51 16 18 C 0.03 0.77 4.87 -17.46 -0.08 0.68 16 19 N -0.88 -22.31 9.48 55.50 0.53 -21.78 16 20 Si 0.93 19.68 29.60 -169.99 -5.03 14.65 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C 0.22 4.41 4.91 -6.82 -0.03 4.37 16 25 C 0.25 5.49 12.95 -20.70 -0.27 5.22 16 26 N -0.47 -11.42 18.55 42.23 0.78 -10.64 16 27 C -0.03 -0.22 9.44 -39.31 -0.37 -0.59 16 28 C -0.22 -1.60 8.99 -39.67 -0.36 -1.95 16 29 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 31 H 0.06 0.18 7.65 -51.93 -0.40 -0.21 16 32 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.25 7.64 -52.49 -0.40 0.85 16 34 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.08 1.15 7.42 -51.93 -0.39 0.77 16 41 H 0.08 1.32 7.51 -51.93 -0.39 0.93 16 42 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.13 2.56 6.46 -51.93 -0.34 2.22 16 44 H 0.08 1.27 6.68 -51.93 -0.35 0.93 16 45 H 0.14 0.78 7.04 -52.49 -0.37 0.41 16 46 H 0.13 0.65 6.27 -52.49 -0.33 0.32 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -33.65 393.06 -7.06 -40.72 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.24 Total: 1.74 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.69 Total: 3.69 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 1.00 Total: -43.11 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.02 Total: -23.60 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.65 -7.06 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353816318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.022 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds