Wall clock time and date at job start Wed Apr 1 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 117.00209 * 2 1 4 4 C 1.39072 * 119.88564 * 180.02562 * 3 2 1 5 5 C 1.37123 * 120.11651 * 180.02562 * 4 3 2 6 6 C 1.40036 * 119.87926 * 359.97438 * 5 4 3 7 7 C 1.46860 * 120.11345 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00091 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.46954 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46931 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46931 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46954 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00006 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00062 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00113 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00098 * 17.72071 * 16 15 13 18 18 C 1.38955 * 120.00069 * 197.72044 * 16 15 13 19 19 N 1.31414 * 119.99756 * 21.39852 * 18 16 15 20 20 Si 1.86803 * 119.99843 * 201.39800 * 18 16 15 21 21 H 1.48495 * 109.47192 * 60.00181 * 20 18 16 22 22 H 1.48498 * 109.46731 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47026 * 299.99931 * 20 18 16 24 24 C 1.46507 * 119.99924 * 359.97438 * 15 13 12 25 25 C 1.47202 * 109.46977 * 84.23165 * 24 15 13 26 26 N 9.45535 * 153.03768 * 145.25054 * 6 1 2 27 27 C 1.40042 * 119.77645 * 0.27715 * 6 5 4 28 28 C 1.37125 * 119.87969 * 359.46533 * 27 6 5 29 29 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46614 * 299.99135 * 1 2 3 31 31 H 1.08994 * 109.47129 * 59.99609 * 1 2 3 32 32 H 1.08005 * 119.94644 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.05923 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46618 * 300.00009 * 9 7 6 35 35 H 1.08994 * 109.47472 * 59.99800 * 9 7 6 36 36 H 1.09000 * 109.47045 * 299.99854 * 10 9 7 37 37 H 1.09005 * 109.47285 * 59.99921 * 10 9 7 38 38 H 1.09000 * 109.47331 * 299.99917 * 11 10 9 39 39 H 1.08997 * 109.47183 * 60.00216 * 11 10 9 40 40 H 1.09000 * 109.47045 * 300.00092 * 12 11 10 41 41 H 1.09005 * 109.47285 * 60.00159 * 12 11 10 42 42 H 0.96997 * 119.99559 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46638 * 204.23224 * 24 15 13 44 44 H 1.09001 * 109.46923 * 324.23370 * 24 15 13 45 45 H 1.07997 * 120.06110 * 179.69685 * 27 6 5 46 46 H 1.07993 * 119.94423 * 180.25367 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4339 1.2787 -0.0005 5 6 4.0614 2.4979 0.0000 6 6 3.3010 3.6739 0.0005 7 6 3.9677 4.9824 0.0017 8 8 5.1790 5.0459 0.0017 9 6 3.1469 6.2463 0.0028 10 6 4.0790 7.4597 0.0032 11 6 3.2456 8.7428 0.0038 12 6 4.1777 9.9562 0.0048 13 6 3.3569 11.2201 0.0060 14 8 2.1456 11.1566 0.0055 15 7 3.9688 12.4210 0.0065 16 6 3.2221 13.5707 0.0070 17 1 2.1808 13.5382 0.2917 18 6 3.8050 14.7779 -0.3587 19 7 4.8977 14.7853 -1.0888 20 14 3.0354 16.3900 0.1873 21 1 2.9995 16.4440 1.6708 22 1 3.8424 17.5240 -0.3304 23 1 1.6523 16.4836 -0.3452 24 6 5.4318 12.4976 0.0065 25 6 5.9290 12.3846 -1.3744 26 7 6.3134 12.2973 -2.4418 27 6 1.9027 3.5979 0.0064 28 6 1.2850 2.3736 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 4.0195 0.3712 -0.0014 33 1 5.1401 2.5512 0.0000 34 1 2.5181 6.2719 -0.8871 35 1 2.5181 6.2704 0.8928 36 1 4.7081 7.4342 0.8929 37 1 4.7075 7.4354 -0.8871 38 1 2.6168 8.7681 -0.8862 39 1 2.6169 8.7674 0.8938 40 1 4.8062 9.9307 0.8950 41 1 4.8068 9.9319 -0.8851 42 1 5.3048 15.6280 -1.3437 43 1 5.7455 13.4523 0.4287 44 1 5.8383 11.6837 0.6068 45 1 1.3118 4.5018 0.0118 46 1 0.2068 2.3138 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353816318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:16 Heat of formation + Delta-G solvation = -78.664726 kcal Electronic energy + Delta-G solvation = -27946.523596 eV Core-core repulsion = 23801.169953 eV Total energy + Delta-G solvation = -4145.353644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.41035 -40.64010 -40.29659 -38.06228 -37.62023 -36.33048 -35.81719 -33.75509 -32.75046 -31.81550 -31.06276 -29.15637 -28.47598 -27.32216 -25.78889 -24.23501 -23.35138 -22.07772 -20.80335 -20.39730 -19.70756 -19.25501 -18.16362 -17.90346 -17.44380 -17.27836 -16.91463 -16.70907 -16.45138 -16.02054 -15.88469 -15.82999 -15.46574 -14.87774 -14.71301 -14.66326 -14.56851 -14.40561 -13.92740 -13.73266 -13.63189 -13.46756 -13.28367 -13.22406 -13.10082 -12.87209 -12.79532 -12.46207 -12.31309 -12.27043 -12.10428 -12.06410 -12.02926 -11.90561 -11.76522 -11.41544 -11.08221 -10.64298 -10.33979 -10.15177 -9.89424 -9.30038 -8.38147 -5.93712 -0.29653 0.33971 1.42391 1.45327 1.49067 1.58153 1.84526 2.09591 2.26170 2.26429 2.37031 2.77745 2.99509 3.02885 3.23553 3.62119 3.71152 3.85700 3.94816 3.98213 4.11224 4.13311 4.27909 4.31281 4.40672 4.42260 4.44451 4.53795 4.57458 4.63235 4.74845 4.76815 4.88032 4.91702 4.95942 4.96972 4.99002 5.12353 5.17117 5.25174 5.41313 5.41855 5.50432 5.55386 5.62582 6.07407 6.31810 6.43225 6.61960 7.01594 7.15568 7.40067 7.97598 8.65487 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.001646 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.953622 B =17003.560394 C =17873.676131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.153 3.847 4 C -0.178 4.178 5 C -0.032 4.032 6 C -0.229 4.229 7 C 0.402 3.598 8 O -0.496 6.496 9 C -0.163 4.163 10 C -0.103 4.103 11 C -0.090 4.090 12 C -0.130 4.130 13 C 0.448 3.552 14 O -0.616 6.616 15 N -0.459 5.459 16 C -0.342 4.342 17 H 0.083 0.917 18 C 0.003 3.997 19 N -0.895 5.895 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.222 3.778 25 C 0.258 3.742 26 N -0.511 5.511 27 C -0.024 4.024 28 C -0.223 4.223 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.273 0.727 43 H 0.123 0.877 44 H 0.139 0.861 45 H 0.162 0.838 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 -26.420 7.152 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.106 3.894 4 C -0.196 4.196 5 C -0.051 4.051 6 C -0.230 4.230 7 C 0.283 3.717 8 O -0.375 6.375 9 C -0.200 4.200 10 C -0.141 4.141 11 C -0.128 4.128 12 C -0.169 4.169 13 C 0.239 3.761 14 O -0.502 6.502 15 N -0.180 5.180 16 C -0.469 4.469 17 H 0.101 0.899 18 C -0.199 4.199 19 N -0.534 5.534 20 Si 0.811 3.189 21 H -0.184 1.184 22 H -0.206 1.206 23 H -0.209 1.209 24 C 0.096 3.904 25 C -0.059 4.059 26 N -0.192 5.192 27 C -0.042 4.042 28 C -0.241 4.241 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.156 0.844 45 H 0.179 0.821 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.052 -26.587 5.503 27.617 hybrid contribution -0.583 1.334 0.050 1.457 sum -5.635 -25.253 5.554 26.464 Atomic orbital electron populations 1.23454 0.75845 1.05936 1.02792 1.86027 1.24002 1.26789 1.87420 1.19597 0.92550 0.85042 0.92185 1.20437 0.91954 0.98948 1.08273 1.21183 1.00644 0.90984 0.92263 1.20526 0.95282 0.94516 1.12673 1.22725 0.88680 0.90757 0.69506 1.90518 1.17987 1.90159 1.38799 1.22086 0.99751 0.91601 1.06578 1.21334 0.97558 0.92403 1.02785 1.21194 0.97108 0.91835 1.02654 1.21659 0.99059 0.91716 1.04511 1.21206 0.88601 0.85706 0.80546 1.90492 1.16420 1.87507 1.55783 1.43862 1.04538 1.05338 1.64213 1.19594 0.96584 0.84909 1.45814 0.89942 1.25900 0.97268 1.02137 0.94580 1.69944 1.22397 1.28643 1.32375 0.85090 0.77590 0.76932 0.79302 1.18439 1.20601 1.20872 1.19067 0.80625 1.06295 0.84440 1.29913 0.91319 0.88839 0.95836 1.80974 1.11386 1.13999 1.12860 1.21460 0.92642 0.99027 0.91060 1.21433 1.01817 0.91489 1.09381 0.86260 0.91115 0.91237 0.83798 0.84788 0.86714 0.85863 0.91051 0.92645 0.92994 0.91126 0.86564 0.90388 0.91659 0.85939 0.84356 0.82078 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.80 113.37 1.11 1.18 16 2 O -0.33 -4.45 10.48 -89.80 -0.94 -5.39 16 3 C 0.15 2.28 6.70 22.67 0.15 2.44 16 4 C -0.18 -2.91 9.95 22.21 0.22 -2.68 16 5 C -0.03 -0.60 9.57 22.44 0.21 -0.39 16 6 C -0.23 -4.18 5.87 -20.15 -0.12 -4.30 16 7 C 0.40 8.58 7.11 27.95 0.20 8.78 16 8 O -0.50 -14.10 15.97 -3.07 -0.05 -14.15 16 9 C -0.16 -2.87 4.30 29.85 0.13 -2.74 16 10 C -0.10 -2.36 4.50 30.59 0.14 -2.22 16 11 C -0.09 -2.50 4.50 30.59 0.14 -2.37 16 12 C -0.13 -4.12 4.30 29.85 0.13 -3.99 16 13 C 0.45 19.80 7.57 87.66 0.66 20.46 16 14 O -0.62 -31.92 15.63 -3.07 -0.05 -31.97 16 15 N -0.46 -21.16 2.60 -645.40 -1.68 -22.84 16 16 C -0.34 -17.74 9.32 84.04 0.78 -16.96 16 17 H 0.08 4.61 7.39 -2.91 -0.02 4.59 16 18 C 0.00 0.15 4.87 84.93 0.41 0.56 16 19 N -0.89 -45.06 9.48 21.67 0.21 -44.86 16 20 Si 0.99 40.11 29.60 68.60 2.03 42.14 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 C 0.22 8.47 4.91 84.57 0.42 8.89 16 25 C 0.26 11.29 12.95 89.42 1.16 12.44 16 26 N -0.51 -24.44 18.55 20.03 0.37 -24.07 16 27 C -0.02 -0.31 9.44 22.45 0.21 -0.10 16 28 C -0.22 -2.65 8.99 22.21 0.20 -2.45 16 29 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.22 7.65 -2.39 -0.02 0.21 16 31 H 0.07 0.24 7.65 -2.39 -0.02 0.22 16 32 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.13 2.54 7.64 -2.91 -0.02 2.51 16 34 H 0.11 1.69 8.09 -2.39 -0.02 1.67 16 35 H 0.12 1.61 8.07 -2.39 -0.02 1.59 16 36 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 37 H 0.05 1.41 8.10 -2.38 -0.02 1.39 16 38 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 39 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 40 H 0.12 2.89 7.42 -2.39 -0.02 2.87 16 41 H 0.08 2.53 7.51 -2.38 -0.02 2.51 16 42 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 43 H 0.12 4.81 6.46 -2.39 -0.02 4.80 16 44 H 0.14 3.72 6.68 -2.39 -0.02 3.70 16 45 H 0.16 1.28 7.04 -2.91 -0.02 1.26 16 46 H 0.16 0.99 6.27 -2.91 -0.02 0.97 16 Total: -1.00 -74.47 393.06 7.05 -67.42 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.01 Total: 17.16 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.16 Total: 16.56 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -1.10 Total: -91.77 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -1.04 Total: -51.51 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -74.47 7.05 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353816318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.250 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds