Wall clock time and date at job start Wed Apr 1 2020 02:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00061 * 2 1 4 4 H 1.48499 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47103 * 300.00384 * 3 2 1 6 6 H 1.48499 * 109.46814 * 59.99862 * 3 2 1 7 7 C 1.38812 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00449 * 163.07205 * 7 2 1 9 9 N 1.36944 * 119.99810 * 343.06744 * 7 2 1 10 10 C 1.46924 * 120.63006 * 331.85009 * 9 7 2 11 11 C 1.53191 * 108.77681 * 233.58729 * 10 9 7 12 12 C 1.53042 * 109.31185 * 305.36415 * 11 10 9 13 13 C 1.52997 * 109.46114 * 181.38364 * 12 11 10 14 14 N 1.46501 * 109.47337 * 174.97364 * 13 12 11 15 15 C 1.34773 * 120.00317 * 179.97438 * 14 13 12 16 16 O 1.21597 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.47512 * 120.00199 * 179.72411 * 15 14 13 18 18 C 1.40152 * 119.94515 * 0.02562 * 17 15 14 19 19 C 1.36210 * 120.49068 * 179.97438 * 18 17 15 20 20 C 1.40012 * 120.09096 * 0.02562 * 19 18 17 21 21 N 1.35557 * 133.27471 * 179.97438 * 20 19 18 22 22 C 1.30923 * 109.71104 * 180.02562 * 21 20 19 23 23 O 1.35203 * 125.00844 * 179.97438 * 22 21 20 24 24 N 1.36246 * 109.97637 * 0.02562 * 22 21 20 25 25 H 0.97000 * 126.39817 * 179.97438 * 24 22 21 26 26 C 1.38556 * 107.20441 * 0.02562 * 24 22 21 27 27 C 1.38225 * 133.89643 * 180.34109 * 26 24 22 28 28 C 1.53045 * 109.52380 * 61.37204 * 12 11 10 29 29 C 1.46924 * 120.62719 * 151.82724 * 9 7 2 30 30 H 0.96996 * 120.00006 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58324 * 113.80128 * 10 9 7 32 32 H 1.09004 * 109.70241 * 353.44490 * 10 9 7 33 33 H 1.09000 * 109.49919 * 185.42051 * 11 10 9 34 34 H 1.08993 * 109.49612 * 65.31485 * 11 10 9 35 35 H 1.09004 * 109.46337 * 301.36175 * 12 11 10 36 36 H 1.09002 * 109.46705 * 54.97460 * 13 12 11 37 37 H 1.09001 * 109.47242 * 294.97544 * 13 12 11 38 38 H 0.97002 * 119.99573 * 0.02562 * 14 13 12 39 39 H 1.07999 * 119.76050 * 359.97362 * 18 17 15 40 40 H 1.08007 * 119.95287 * 180.02562 * 19 18 17 41 41 H 0.96697 * 114.00023 * 90.02752 * 23 22 21 42 42 H 1.07999 * 120.20303 * 359.89287 * 27 26 24 43 43 H 1.09002 * 109.50058 * 58.58170 * 28 12 11 44 44 H 1.09007 * 109.49488 * 178.67739 * 28 12 11 45 45 H 1.09003 * 109.58698 * 246.19759 * 29 9 7 46 46 H 1.08996 * 109.59259 * 6.48497 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3444 10 6 0.2262 -2.3409 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8120 -4.7021 1.8328 13 6 1.0498 -5.6916 2.9752 14 7 1.2321 -7.0374 2.4256 15 6 1.4575 -8.0779 3.2519 16 8 1.5091 -7.8999 4.4537 17 6 1.6351 -9.4339 2.6990 18 6 1.5696 -9.6388 1.3140 19 6 1.7325 -10.8860 0.7914 20 6 1.9668 -11.9766 1.6376 21 7 2.1625 -13.2996 1.4160 22 6 2.3414 -13.9167 2.5567 23 8 2.5625 -15.2434 2.6945 24 7 2.2708 -13.0250 3.5844 25 1 2.3688 -13.2257 4.5283 26 6 2.0315 -11.7782 3.0294 27 6 1.8711 -10.5099 3.5552 28 6 2.0676 -4.6177 0.9618 29 6 1.8139 -3.6527 -0.2007 30 1 -0.4850 0.8400 0.0004 31 1 -0.6769 -2.6411 0.7347 32 1 0.0968 -1.3358 1.6677 33 1 -0.3831 -3.3862 3.0509 34 1 1.3472 -2.9697 2.9973 35 1 -0.0280 -5.0418 1.2270 36 1 0.1901 -5.6862 3.6453 37 1 1.9431 -5.4008 3.5279 38 1 1.1914 -7.1793 1.4669 39 1 1.3888 -8.8015 0.6562 40 1 1.6808 -11.0339 -0.2772 41 1 3.4971 -15.4906 2.6735 42 1 1.9257 -10.3533 4.6224 43 1 2.9024 -4.2542 1.5610 44 1 2.3047 -5.6064 0.5685 45 1 1.0402 -4.0600 -0.8517 46 1 2.7332 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362528592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:48 Heat of formation + Delta-G solvation = 16.911683 kcal Electronic energy + Delta-G solvation = -28769.516100 eV Core-core repulsion = 24660.599712 eV Total energy + Delta-G solvation = -4108.916388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.66519 -40.07903 -38.53632 -37.82824 -36.63876 -35.03638 -33.73953 -32.91638 -30.93179 -30.53768 -29.91951 -29.42620 -26.82942 -24.50836 -23.49206 -23.26534 -22.27367 -22.09622 -21.11094 -20.70598 -19.56337 -19.19965 -18.42384 -17.84643 -16.98168 -16.73565 -16.09298 -15.97984 -15.34924 -14.89941 -14.77681 -14.56088 -14.39983 -14.10013 -13.98460 -13.59472 -13.55154 -13.46388 -13.16065 -12.57409 -12.38581 -12.34480 -12.07803 -11.98775 -11.81839 -11.34490 -11.24618 -10.99447 -10.73707 -10.53447 -10.50597 -10.26857 -10.20633 -10.11906 -9.89335 -9.55879 -9.44466 -9.09020 -8.93375 -8.56855 -8.47115 -6.66683 -5.78951 -3.21326 0.13559 0.94218 1.72818 2.00342 2.78861 3.06634 3.25350 3.37144 3.45349 3.47384 3.56121 3.98507 4.47107 4.49888 4.54225 4.72274 4.80360 4.86971 5.01382 5.15329 5.22600 5.37155 5.41468 5.56341 5.59611 5.74221 5.85328 5.88330 5.92184 5.94071 6.04033 6.13051 6.15181 6.24162 6.31785 6.39807 6.45369 6.59900 6.68308 6.75917 6.81104 6.97793 7.00402 7.19865 7.36355 7.45636 7.66177 7.80203 8.12217 8.45551 9.21825 9.85354 10.41848 11.29552 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031917 B = 0.001759 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.061235 B =15910.780527 C =16365.626639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.716 5.716 15 C 0.558 3.442 16 O -0.543 6.543 17 C -0.114 4.114 18 C -0.090 4.090 19 C -0.069 4.069 20 C 0.081 3.919 21 N -0.487 5.487 22 C 0.460 3.540 23 O -0.442 6.442 24 N -0.596 5.596 25 H 0.426 0.574 26 C 0.043 3.957 27 C -0.040 4.040 28 C -0.128 4.128 29 C 0.145 3.855 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.401 0.599 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.413 0.587 42 H 0.140 0.860 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 -27.289 6.416 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.110 4.110 13 C 0.000 4.000 14 N -0.368 5.368 15 C 0.345 3.655 16 O -0.421 6.421 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.038 4.038 21 N -0.219 5.219 22 C 0.155 3.845 23 O -0.244 6.244 24 N -0.221 5.221 25 H 0.266 0.734 26 C -0.066 4.066 27 C -0.062 4.062 28 C -0.167 4.167 29 C 0.018 3.982 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.237 0.763 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.272 0.728 42 H 0.158 0.842 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.853 -27.507 6.450 28.514 hybrid contribution 0.933 0.764 0.849 1.475 sum 4.786 -26.743 7.299 28.131 Atomic orbital electron populations 1.70035 1.05251 1.25372 1.54091 1.25044 0.95284 0.98402 1.00965 0.86245 0.79382 0.84020 0.77261 1.20278 1.21759 1.21575 1.19226 0.92549 0.84828 1.41476 0.91708 1.44057 1.35899 1.01535 1.50029 1.20761 0.88611 0.98152 0.87917 1.22177 1.00382 0.94602 1.00094 1.21326 0.98828 0.95398 0.95419 1.21635 1.01711 0.79843 0.96795 1.46004 1.72222 1.08094 1.10454 1.18009 0.76944 0.84209 0.86342 1.90784 1.51217 1.85407 1.14718 1.19656 1.05496 0.93222 0.93554 1.20820 0.99284 0.97262 0.93778 1.19944 0.99725 0.89367 0.99811 1.18990 1.03041 0.90833 0.90969 1.70664 1.23390 1.04898 1.22919 1.20387 0.98573 0.82988 0.82516 1.84818 1.32812 1.13188 1.93570 1.43409 1.61794 1.06261 1.10604 0.73439 1.18453 1.07860 0.86197 0.94081 1.19976 0.97941 0.87599 1.00680 1.22087 0.97011 0.98730 0.98864 1.20891 0.97550 0.87028 0.92685 0.93701 0.96435 0.89419 0.93034 0.92370 0.91204 0.91565 0.91386 0.76293 0.84429 0.84180 0.72836 0.84188 0.92117 0.93456 0.96580 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.37 2.99 -172.32 -0.52 -14.89 16 10 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 11 C -0.13 -2.38 5.36 -26.61 -0.14 -2.52 16 12 C -0.09 -1.36 2.19 -90.58 -0.20 -1.56 16 13 C 0.12 1.66 5.06 -4.04 -0.02 1.64 16 14 N -0.72 -8.30 5.22 -61.36 -0.32 -8.62 16 15 C 0.56 7.11 7.76 -12.48 -0.10 7.01 16 16 O -0.54 -8.75 16.33 5.28 0.09 -8.66 16 17 C -0.11 -1.19 5.88 -104.92 -0.62 -1.80 16 18 C -0.09 -0.76 9.46 -39.59 -0.37 -1.14 16 19 C -0.07 -0.61 10.03 -39.65 -0.40 -1.01 16 20 C 0.08 0.84 7.22 -84.61 -0.61 0.23 16 21 N -0.49 -5.18 11.29 -12.18 -0.14 -5.32 16 22 C 0.46 3.61 9.39 -88.91 -0.83 2.77 16 23 O -0.44 -2.18 13.62 -17.31 -0.24 -2.42 16 24 N -0.60 -3.96 6.27 -11.93 -0.07 -4.03 16 25 H 0.43 1.44 8.96 -40.82 -0.37 1.07 16 26 C 0.04 0.39 7.29 -83.88 -0.61 -0.22 16 27 C -0.04 -0.39 9.61 -39.11 -0.38 -0.77 16 28 C -0.13 -2.00 5.25 -26.61 -0.14 -2.14 16 29 C 0.14 2.86 6.52 -3.71 -0.02 2.84 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 2.29 6.07 -51.93 -0.31 1.97 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 3.74 5.65 -40.82 -0.23 3.51 16 39 H 0.14 0.85 6.36 -52.49 -0.33 0.52 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.41 -0.24 9.06 45.56 0.41 0.17 16 42 H 0.14 1.30 7.64 -52.49 -0.40 0.89 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.60 7.15 -51.92 -0.37 0.23 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -35.20 376.83 -9.99 -45.19 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.37 Total: 1.59 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -4.69 Total: 0.28 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.43 Total: -58.14 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.15 Total: -11.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.20 -9.99 -45.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362528592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.099 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds