Wall clock time and date at job start Wed Apr 1 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00061 * 2 1 4 4 H 1.48499 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47103 * 300.00384 * 3 2 1 6 6 H 1.48499 * 109.46814 * 59.99862 * 3 2 1 7 7 C 1.38812 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00449 * 163.07205 * 7 2 1 9 9 N 1.36944 * 119.99810 * 343.06744 * 7 2 1 10 10 C 1.46924 * 120.63006 * 331.85009 * 9 7 2 11 11 C 1.53191 * 108.77681 * 233.58729 * 10 9 7 12 12 C 1.53042 * 109.31185 * 305.36415 * 11 10 9 13 13 C 1.52997 * 109.46114 * 181.38364 * 12 11 10 14 14 N 1.46501 * 109.47337 * 174.97364 * 13 12 11 15 15 C 1.34773 * 120.00317 * 179.97438 * 14 13 12 16 16 O 1.21597 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.47512 * 120.00199 * 179.72411 * 15 14 13 18 18 C 1.40152 * 119.94515 * 0.02562 * 17 15 14 19 19 C 1.36210 * 120.49068 * 179.97438 * 18 17 15 20 20 C 1.40012 * 120.09096 * 0.02562 * 19 18 17 21 21 N 1.35557 * 133.27471 * 179.97438 * 20 19 18 22 22 C 1.30923 * 109.71104 * 180.02562 * 21 20 19 23 23 O 1.35203 * 125.00844 * 179.97438 * 22 21 20 24 24 N 1.36246 * 109.97637 * 0.02562 * 22 21 20 25 25 H 0.97000 * 126.39817 * 179.97438 * 24 22 21 26 26 C 1.38556 * 107.20441 * 0.02562 * 24 22 21 27 27 C 1.38225 * 133.89643 * 180.34109 * 26 24 22 28 28 C 1.53045 * 109.52380 * 61.37204 * 12 11 10 29 29 C 1.46924 * 120.62719 * 151.82724 * 9 7 2 30 30 H 0.96996 * 120.00006 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58324 * 113.80128 * 10 9 7 32 32 H 1.09004 * 109.70241 * 353.44490 * 10 9 7 33 33 H 1.09000 * 109.49919 * 185.42051 * 11 10 9 34 34 H 1.08993 * 109.49612 * 65.31485 * 11 10 9 35 35 H 1.09004 * 109.46337 * 301.36175 * 12 11 10 36 36 H 1.09002 * 109.46705 * 54.97460 * 13 12 11 37 37 H 1.09001 * 109.47242 * 294.97544 * 13 12 11 38 38 H 0.97002 * 119.99573 * 0.02562 * 14 13 12 39 39 H 1.07999 * 119.76050 * 359.97362 * 18 17 15 40 40 H 1.08007 * 119.95287 * 180.02562 * 19 18 17 41 41 H 0.96697 * 114.00023 * 90.02752 * 23 22 21 42 42 H 1.07999 * 120.20303 * 359.89287 * 27 26 24 43 43 H 1.09002 * 109.50058 * 58.58170 * 28 12 11 44 44 H 1.09007 * 109.49488 * 178.67739 * 28 12 11 45 45 H 1.09003 * 109.58698 * 246.19759 * 29 9 7 46 46 H 1.08996 * 109.59259 * 6.48497 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3444 10 6 0.2262 -2.3409 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8120 -4.7021 1.8328 13 6 1.0498 -5.6916 2.9752 14 7 1.2321 -7.0374 2.4256 15 6 1.4575 -8.0779 3.2519 16 8 1.5091 -7.8999 4.4537 17 6 1.6351 -9.4339 2.6990 18 6 1.5696 -9.6388 1.3140 19 6 1.7325 -10.8860 0.7914 20 6 1.9668 -11.9766 1.6376 21 7 2.1625 -13.2996 1.4160 22 6 2.3414 -13.9167 2.5567 23 8 2.5625 -15.2434 2.6945 24 7 2.2708 -13.0250 3.5844 25 1 2.3688 -13.2257 4.5283 26 6 2.0315 -11.7782 3.0294 27 6 1.8711 -10.5099 3.5552 28 6 2.0676 -4.6177 0.9618 29 6 1.8139 -3.6527 -0.2007 30 1 -0.4850 0.8400 0.0004 31 1 -0.6769 -2.6411 0.7347 32 1 0.0968 -1.3358 1.6677 33 1 -0.3831 -3.3862 3.0509 34 1 1.3472 -2.9697 2.9973 35 1 -0.0280 -5.0418 1.2270 36 1 0.1901 -5.6862 3.6453 37 1 1.9431 -5.4008 3.5279 38 1 1.1914 -7.1793 1.4669 39 1 1.3888 -8.8015 0.6562 40 1 1.6808 -11.0339 -0.2772 41 1 3.4971 -15.4906 2.6735 42 1 1.9257 -10.3533 4.6224 43 1 2.9024 -4.2542 1.5610 44 1 2.3047 -5.6064 0.5685 45 1 1.0402 -4.0600 -0.8517 46 1 2.7332 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362528592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:47 Heat of formation + Delta-G solvation = -11.029366 kcal Electronic energy + Delta-G solvation = -28770.727715 eV Core-core repulsion = 24660.599712 eV Total energy + Delta-G solvation = -4110.128003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.28432 -41.03612 -39.44172 -38.92671 -37.29460 -36.41659 -34.49420 -34.37342 -32.57582 -31.41349 -31.20011 -30.41059 -28.26349 -25.95225 -24.58256 -23.90667 -23.73083 -22.79160 -22.55136 -21.64350 -20.67740 -20.08387 -19.29787 -18.60264 -18.44644 -17.62664 -17.04631 -16.86323 -16.61410 -16.36931 -15.69484 -15.53831 -15.26441 -15.18121 -15.13488 -14.99516 -14.81845 -14.65780 -14.23269 -13.97542 -13.80258 -13.41954 -13.05571 -12.98437 -12.81138 -12.65512 -12.61352 -12.56352 -12.20675 -11.97087 -11.92670 -11.79988 -11.57822 -11.29059 -11.17709 -11.06782 -10.97595 -10.51303 -10.11260 -9.57337 -9.26297 -8.63117 -7.84743 -5.29225 -0.54975 0.29172 1.15565 1.38362 1.46472 1.49077 1.58876 1.96847 2.16946 2.53205 2.69345 2.81690 3.29788 3.41043 3.69946 3.75556 3.87833 3.96338 3.99836 4.09377 4.13010 4.15574 4.21089 4.48059 4.57426 4.59391 4.74707 4.78593 4.85495 4.94552 4.98674 5.06486 5.11625 5.19377 5.25854 5.27603 5.33659 5.34735 5.40859 5.48841 5.59538 5.62290 5.69787 5.83652 5.85498 6.43096 6.54575 6.57694 6.63005 7.19025 7.19239 7.92014 8.42035 9.21322 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031917 B = 0.001759 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.061235 B =15910.780527 C =16365.626639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.122 4.122 12 C -0.079 4.079 13 C 0.136 3.864 14 N -0.706 5.706 15 C 0.561 3.439 16 O -0.582 6.582 17 C -0.129 4.129 18 C -0.081 4.081 19 C -0.075 4.075 20 C 0.066 3.934 21 N -0.526 5.526 22 C 0.473 3.527 23 O -0.442 6.442 24 N -0.584 5.584 25 H 0.440 0.560 26 C 0.034 3.966 27 C -0.040 4.040 28 C -0.115 4.115 29 C 0.139 3.861 30 H 0.249 0.751 31 H -0.001 1.001 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.414 0.586 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.437 0.563 42 H 0.140 0.860 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 -29.502 6.397 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.162 4.162 12 C -0.098 4.098 13 C 0.012 3.988 14 N -0.358 5.358 15 C 0.349 3.651 16 O -0.464 6.464 17 C -0.134 4.134 18 C -0.101 4.101 19 C -0.095 4.095 20 C -0.054 4.054 21 N -0.258 5.258 22 C 0.168 3.832 23 O -0.248 6.248 24 N -0.209 5.209 25 H 0.283 0.717 26 C -0.075 4.075 27 C -0.062 4.062 28 C -0.154 4.154 29 C 0.014 3.986 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.301 0.699 42 H 0.157 0.843 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.038 0.962 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.854 -29.777 6.430 30.847 hybrid contribution 0.661 1.286 0.834 1.669 sum 5.515 -28.490 7.264 29.914 Atomic orbital electron populations 1.70178 1.06569 1.25636 1.55726 1.25754 0.96022 1.01358 1.01580 0.85276 0.78677 0.80219 0.76705 1.19186 1.21979 1.21846 1.19535 0.92764 0.86197 1.40412 0.91770 1.44341 1.35954 1.02474 1.50825 1.20566 0.87847 0.97470 0.89019 1.21976 1.00888 0.95111 0.98222 1.21160 0.98891 0.93930 0.95779 1.21320 1.01322 0.80307 0.95820 1.45830 1.71761 1.07115 1.11115 1.18298 0.75956 0.85020 0.85803 1.90765 1.53123 1.86039 1.16430 1.19521 1.07357 0.91991 0.94513 1.20993 0.98140 0.97926 0.93091 1.20175 0.99591 0.89115 1.00583 1.19356 1.03031 0.91237 0.91738 1.70641 1.25434 1.05308 1.24459 1.20456 0.96754 0.83709 0.82241 1.84791 1.35227 1.11403 1.93356 1.43337 1.60968 1.05288 1.11332 0.71678 1.18430 1.08329 0.86710 0.94031 1.19999 0.97643 0.87842 1.00694 1.21948 0.96812 0.99500 0.97154 1.21091 0.97308 0.85925 0.94307 0.94215 0.98296 0.93223 0.91282 0.93152 0.90220 0.91658 0.92253 0.74715 0.82028 0.82631 0.69906 0.84257 0.93121 0.89422 0.96228 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 11.19 21.65 0.24 -54.88 16 2 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 3 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.26 -14.10 9.58 84.03 0.81 -13.29 16 8 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 9 N -0.61 -29.86 2.99 -699.09 -2.09 -31.95 16 10 C 0.18 8.27 5.30 86.36 0.46 8.73 16 11 C -0.12 -4.31 5.36 30.67 0.16 -4.14 16 12 C -0.08 -2.19 2.19 -10.77 -0.02 -2.21 16 13 C 0.14 3.36 5.06 86.38 0.44 3.80 16 14 N -0.71 -14.46 5.22 -466.29 -2.43 -16.90 16 15 C 0.56 13.31 7.76 86.69 0.67 13.98 16 16 O -0.58 -18.28 16.33 -4.02 -0.07 -18.34 16 17 C -0.13 -2.45 5.88 -20.06 -0.12 -2.57 16 18 C -0.08 -1.16 9.46 22.26 0.21 -0.95 16 19 C -0.08 -1.17 10.03 22.23 0.22 -0.95 16 20 C 0.07 1.27 7.22 39.61 0.29 1.55 16 21 N -0.53 -10.44 11.29 -306.25 -3.46 -13.90 16 22 C 0.47 6.55 9.39 179.75 1.69 8.24 16 23 O -0.44 -3.33 13.62 -84.84 -1.16 -4.49 16 24 N -0.58 -6.73 6.27 -302.69 -1.90 -8.63 16 25 H 0.44 2.13 8.96 -92.71 -0.83 1.30 16 26 C 0.03 0.58 7.29 38.69 0.28 0.86 16 27 C -0.04 -0.73 9.61 22.58 0.22 -0.52 16 28 C -0.12 -3.32 5.25 30.68 0.16 -3.16 16 29 C 0.14 5.31 6.52 86.36 0.56 5.87 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.05 2.69 6.07 -2.38 -0.01 2.67 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 6.17 5.65 -92.71 -0.52 5.65 16 39 H 0.16 1.41 6.36 -2.91 -0.02 1.39 16 40 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.44 -1.65 9.06 -74.06 -0.67 -2.32 16 42 H 0.14 2.49 7.64 -2.91 -0.02 2.47 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.09 1.85 7.15 -2.38 -0.02 1.83 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 Total: -1.00 -77.86 376.83 -3.36 -81.21 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.97 Total: 8.17 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.44 Total: 12.77 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -9.64 Total: -126.24 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -1.22 Total: -22.83 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -77.86 -3.36 -81.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362528592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.185 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds