Wall clock time and date at job start Wed Apr 1 2020 02:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00116 * 2 1 4 4 H 1.09009 * 110.31314 * 329.25611 * 3 2 1 5 5 C 1.55093 * 110.45121 * 206.98443 * 3 2 1 6 6 C 1.54177 * 102.21113 * 263.26722 * 5 3 2 7 7 H 1.09000 * 113.11436 * 82.03820 * 6 5 3 8 8 C 1.50751 * 112.13798 * 210.69362 * 6 5 3 9 9 O 1.21237 * 127.34613 * 301.81168 * 8 6 5 10 10 N 1.35165 * 105.30805 * 122.07427 * 8 6 5 11 11 C 1.46497 * 124.25457 * 175.17861 * 10 8 6 12 12 H 1.08997 * 109.47517 * 2.34293 * 11 10 8 13 13 C 1.53007 * 109.47495 * 242.34194 * 11 10 8 14 14 C 1.50702 * 109.46690 * 65.00017 * 13 11 10 15 15 H 1.08003 * 120.00298 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99633 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00287 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99678 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46997 * 60.00222 * 18 16 14 20 20 H 1.48505 * 109.47021 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47578 * 300.00217 * 18 16 14 22 22 C 1.50701 * 109.47133 * 122.34707 * 11 10 8 23 23 C 1.38234 * 119.99745 * 326.54091 * 22 11 10 24 24 C 1.38236 * 120.00034 * 179.76769 * 23 22 11 25 25 C 1.38235 * 119.99901 * 0.51058 * 24 23 22 26 26 C 1.38236 * 120.00107 * 359.74312 * 25 24 23 27 27 C 1.38235 * 120.00329 * 146.81919 * 22 11 10 28 28 C 1.34221 * 111.48828 * 355.20502 * 10 8 6 29 29 O 1.21544 * 124.04752 * 173.42476 * 28 10 8 30 30 N 1.33581 * 111.90057 * 353.44106 * 28 10 8 31 31 C 1.46737 * 148.91623 * 201.56722 * 30 28 10 32 32 H 1.08999 * 109.47669 * 59.99297 * 1 2 3 33 33 H 1.08999 * 109.47339 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47054 * 299.99561 * 1 2 3 35 35 H 1.08998 * 110.85898 * 145.08496 * 5 3 2 36 36 H 1.09005 * 110.85487 * 21.44545 * 5 3 2 37 37 H 1.08988 * 109.47381 * 184.99948 * 13 11 10 38 38 H 1.08998 * 109.46661 * 305.00868 * 13 11 10 39 39 H 0.97004 * 120.00042 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.99956 * 0.02562 * 23 22 11 41 41 H 1.08006 * 120.00000 * 180.22845 * 24 23 22 42 42 H 1.07999 * 120.00026 * 179.72853 * 25 24 23 43 43 H 1.07994 * 120.00306 * 179.97438 * 26 25 24 44 44 H 1.07994 * 119.99761 * 359.97438 * 27 22 11 45 45 H 1.09005 * 110.06740 * 263.34673 * 31 30 28 46 46 H 1.08995 * 110.06822 * 24.86969 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3615 2.0086 -0.5226 5 6 3.4137 1.2738 -0.6594 6 6 4.3462 1.1645 0.5636 7 1 4.4475 0.1446 0.9346 8 6 5.6781 1.8286 0.3235 9 8 6.4777 1.5776 -0.5525 10 7 5.7933 2.7594 1.2968 11 6 6.9858 3.5823 1.5137 12 1 7.7294 3.3528 0.7506 13 6 7.5665 3.2841 2.8976 14 6 8.0526 1.8583 2.9417 15 1 7.9573 1.2280 2.0698 16 6 8.6189 1.3585 4.0951 17 7 8.7345 2.1258 5.1569 18 14 9.2208 -0.4091 4.1500 19 1 10.2719 -0.6063 3.1196 20 1 9.7845 -0.6985 5.4931 21 1 8.0853 -1.3273 3.8809 22 6 6.6124 5.0399 1.4292 23 6 5.6138 5.4485 0.5652 24 6 5.2680 6.7849 0.4911 25 6 5.9281 7.7140 1.2733 26 6 6.9303 7.3061 2.1336 27 6 7.2725 5.9690 2.2115 28 6 4.6781 2.8345 2.0398 29 8 4.5738 3.5110 3.0441 30 7 3.6966 2.0765 1.5433 31 6 2.2624 1.7814 1.4480 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 3.6040 2.1941 -1.2115 36 1 3.5188 0.4030 -1.3066 37 1 8.3998 3.9583 3.0949 38 1 6.7951 3.4285 3.6540 39 1 9.1326 1.7740 5.9685 40 1 5.1009 4.7232 -0.0490 41 1 4.4852 7.1037 -0.1813 42 1 5.6609 8.7586 1.2123 43 1 7.4463 8.0319 2.7444 44 1 8.0555 5.6502 2.8835 45 1 1.9949 0.9938 2.1526 46 1 1.6811 2.6803 1.6529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365340707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:41 Heat of formation + Delta-G solvation = -29.136850 kcal Electronic energy + Delta-G solvation = -31525.822578 eV Core-core repulsion = 27382.616624 eV Total energy + Delta-G solvation = -4143.205954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28836 -39.29317 -38.56289 -37.99505 -36.48479 -35.32222 -33.43480 -32.13583 -30.71444 -30.48764 -29.38616 -28.41703 -26.89169 -25.12941 -24.86963 -22.90224 -21.89855 -21.64603 -21.52587 -20.40305 -19.26922 -17.74473 -17.03659 -16.84529 -16.29102 -16.00668 -15.91178 -15.67526 -15.30802 -14.93532 -14.75442 -14.43992 -14.31749 -14.25679 -14.04814 -13.59500 -13.14432 -13.09368 -13.06146 -12.87859 -12.53080 -12.23739 -12.08737 -12.02022 -11.88135 -11.63643 -11.29270 -11.10169 -10.92855 -10.72895 -10.65962 -10.60031 -10.14651 -10.00176 -9.90745 -9.68679 -9.15427 -8.97135 -8.77301 -8.54481 -8.36418 -8.24050 -6.01729 -4.04674 1.68067 1.77327 2.08677 2.37086 3.26220 3.33258 3.37467 3.38696 3.40630 3.54601 4.05934 4.18127 4.25850 4.44238 4.48766 4.79617 4.87652 4.97673 5.04006 5.05250 5.14815 5.19841 5.27944 5.31652 5.34508 5.36269 5.46297 5.50971 5.57448 5.66438 5.70614 5.82311 5.86992 6.01606 6.14657 6.28140 6.38904 6.50864 6.76416 6.79453 6.85192 6.93334 7.08961 7.35015 7.51332 7.61144 7.79466 7.87711 7.96739 8.31450 8.62972 8.99068 9.58898 11.09116 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007790 B = 0.005393 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3593.296253 B = 5190.882447 C = 7728.171843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.072 3.928 4 H 0.086 0.914 5 C -0.108 4.108 6 C 0.048 3.952 7 H 0.137 0.863 8 C 0.529 3.471 9 O -0.476 6.476 10 N -0.549 5.549 11 C 0.189 3.811 12 H 0.109 0.891 13 C 0.011 3.989 14 C -0.523 4.523 15 H 0.052 0.948 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.278 1.278 22 C -0.077 4.077 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.096 4.096 28 C 0.743 3.257 29 O -0.515 6.515 30 N -0.645 5.645 31 C 0.142 3.858 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.039 0.961 38 H 0.047 0.953 39 H 0.262 0.738 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.138 0.862 45 H 0.084 0.916 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.822 2.820 -12.064 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.013 3.987 4 H 0.104 0.896 5 C -0.146 4.146 6 C -0.062 4.062 7 H 0.154 0.846 8 C 0.316 3.684 9 O -0.347 6.347 10 N -0.292 5.292 11 C 0.089 3.911 12 H 0.126 0.874 13 C -0.026 4.026 14 C -0.562 4.562 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.204 1.204 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.114 4.114 28 C 0.447 3.553 29 O -0.386 6.386 30 N -0.388 5.388 31 C 0.021 3.979 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.155 0.845 45 H 0.102 0.898 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.317 3.107 -11.532 19.422 hybrid contribution 0.083 -0.927 0.274 0.971 sum -15.234 2.179 -11.258 19.067 Atomic orbital electron populations 1.22862 0.80681 1.03149 1.00199 1.87997 1.19945 1.26522 1.94708 1.23374 0.95345 0.85491 0.94530 0.89617 1.22542 0.91313 1.04855 0.95905 1.23330 0.92079 0.98305 0.92439 0.84613 1.20540 0.87994 0.79327 0.80528 1.90742 1.47368 1.64051 1.32518 1.46574 1.15950 1.37593 1.29104 1.20561 0.82885 0.83618 1.04009 0.87381 1.19651 0.96984 0.97406 0.88604 1.21027 1.40199 0.96812 0.98116 0.92956 1.24923 0.95788 0.97537 0.95562 1.69943 1.44288 1.35963 1.02502 0.86699 0.79220 0.85221 0.77165 1.20070 1.21186 1.20352 1.20234 0.96236 0.95631 0.95636 1.20829 0.97963 0.95671 0.98816 1.20947 1.00090 0.93178 1.00037 1.21030 0.97219 0.98958 0.97536 1.21130 0.97871 0.95941 0.98887 1.21310 1.00068 0.92386 0.97631 1.14771 0.78857 0.79270 0.82428 1.90971 1.81313 1.44066 1.22220 1.48212 1.06577 1.37294 1.46707 1.22284 0.77117 1.01420 0.97121 0.93783 0.89340 0.93703 0.89033 0.87740 0.94269 0.93454 0.92846 0.87585 0.86817 0.86688 0.86201 0.84477 0.89782 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.87 101.05 1.10 1.26 16 2 O -0.37 -3.39 10.32 -35.23 -0.36 -3.76 16 3 C 0.07 0.62 3.48 -24.84 -0.09 0.54 16 4 H 0.09 0.54 7.85 -51.92 -0.41 0.14 16 5 C -0.11 -1.10 6.34 -25.01 -0.16 -1.26 16 6 C 0.05 0.69 4.02 -67.18 -0.27 0.42 16 7 H 0.14 1.89 8.14 -51.93 -0.42 1.47 16 8 C 0.53 9.69 7.66 -10.79 -0.08 9.61 16 9 O -0.48 -9.55 17.55 5.59 0.10 -9.46 16 10 N -0.55 -11.08 1.41 -115.20 -0.16 -11.24 16 11 C 0.19 4.09 2.52 -69.08 -0.17 3.91 16 12 H 0.11 2.35 7.66 -51.93 -0.40 1.95 16 13 C 0.01 0.27 3.81 -27.88 -0.11 0.17 16 14 C -0.52 -14.72 8.84 -34.44 -0.30 -15.03 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.08 -1.48 4.83 -104.62 -0.51 -1.99 16 23 C -0.11 -1.95 8.82 -39.58 -0.35 -2.30 16 24 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.13 -1.85 10.05 -39.58 -0.40 -2.24 16 26 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 27 C -0.10 -1.77 9.13 -39.58 -0.36 -2.14 16 28 C 0.74 15.07 7.36 -88.48 -0.65 14.42 16 29 O -0.52 -12.38 15.78 5.33 0.08 -12.30 16 30 N -0.64 -10.10 4.07 -170.08 -0.69 -10.79 16 31 C 0.14 1.55 7.42 -3.13 -0.02 1.53 16 32 H 0.04 0.20 8.10 -51.93 -0.42 -0.22 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.89 8.01 -51.93 -0.42 0.47 16 36 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.04 1.03 6.23 -51.94 -0.32 0.71 16 38 H 0.05 1.37 6.56 -51.93 -0.34 1.03 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.11 1.72 7.46 -52.49 -0.39 1.33 16 41 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.14 2.65 5.97 -52.49 -0.31 2.33 16 45 H 0.08 0.90 7.98 -51.93 -0.41 0.49 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -35.08 380.69 -9.20 -44.28 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.35 Total: 2.30 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -3.27 Total: 4.13 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.12 Total: -47.94 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.18 Total: -25.51 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.08 -9.20 -44.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365340707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.144 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds