Wall clock time and date at job start Wed Apr 1 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00116 * 2 1 4 4 H 1.09009 * 110.31314 * 329.25611 * 3 2 1 5 5 C 1.55093 * 110.45121 * 206.98443 * 3 2 1 6 6 C 1.54177 * 102.21113 * 263.26722 * 5 3 2 7 7 H 1.09000 * 113.11436 * 82.03820 * 6 5 3 8 8 C 1.50751 * 112.13798 * 210.69362 * 6 5 3 9 9 O 1.21237 * 127.34613 * 301.81168 * 8 6 5 10 10 N 1.35165 * 105.30805 * 122.07427 * 8 6 5 11 11 C 1.46497 * 124.25457 * 175.17861 * 10 8 6 12 12 H 1.08997 * 109.47517 * 2.34293 * 11 10 8 13 13 C 1.53007 * 109.47495 * 242.34194 * 11 10 8 14 14 C 1.50702 * 109.46690 * 65.00017 * 13 11 10 15 15 H 1.08003 * 120.00298 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99633 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00287 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99678 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46997 * 60.00222 * 18 16 14 20 20 H 1.48505 * 109.47021 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47578 * 300.00217 * 18 16 14 22 22 C 1.50701 * 109.47133 * 122.34707 * 11 10 8 23 23 C 1.38234 * 119.99745 * 326.54091 * 22 11 10 24 24 C 1.38236 * 120.00034 * 179.76769 * 23 22 11 25 25 C 1.38235 * 119.99901 * 0.51058 * 24 23 22 26 26 C 1.38236 * 120.00107 * 359.74312 * 25 24 23 27 27 C 1.38235 * 120.00329 * 146.81919 * 22 11 10 28 28 C 1.34221 * 111.48828 * 355.20502 * 10 8 6 29 29 O 1.21544 * 124.04752 * 173.42476 * 28 10 8 30 30 N 1.33581 * 111.90057 * 353.44106 * 28 10 8 31 31 C 1.46737 * 148.91623 * 201.56722 * 30 28 10 32 32 H 1.08999 * 109.47669 * 59.99297 * 1 2 3 33 33 H 1.08999 * 109.47339 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47054 * 299.99561 * 1 2 3 35 35 H 1.08998 * 110.85898 * 145.08496 * 5 3 2 36 36 H 1.09005 * 110.85487 * 21.44545 * 5 3 2 37 37 H 1.08988 * 109.47381 * 184.99948 * 13 11 10 38 38 H 1.08998 * 109.46661 * 305.00868 * 13 11 10 39 39 H 0.97004 * 120.00042 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.99956 * 0.02562 * 23 22 11 41 41 H 1.08006 * 120.00000 * 180.22845 * 24 23 22 42 42 H 1.07999 * 120.00026 * 179.72853 * 25 24 23 43 43 H 1.07994 * 120.00306 * 179.97438 * 26 25 24 44 44 H 1.07994 * 119.99761 * 359.97438 * 27 22 11 45 45 H 1.09005 * 110.06740 * 263.34673 * 31 30 28 46 46 H 1.08995 * 110.06822 * 24.86969 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3615 2.0086 -0.5226 5 6 3.4137 1.2738 -0.6594 6 6 4.3462 1.1645 0.5636 7 1 4.4475 0.1446 0.9346 8 6 5.6781 1.8286 0.3235 9 8 6.4777 1.5776 -0.5525 10 7 5.7933 2.7594 1.2968 11 6 6.9858 3.5823 1.5137 12 1 7.7294 3.3528 0.7506 13 6 7.5665 3.2841 2.8976 14 6 8.0526 1.8583 2.9417 15 1 7.9573 1.2280 2.0698 16 6 8.6189 1.3585 4.0951 17 7 8.7345 2.1258 5.1569 18 14 9.2208 -0.4091 4.1500 19 1 10.2719 -0.6063 3.1196 20 1 9.7845 -0.6985 5.4931 21 1 8.0853 -1.3273 3.8809 22 6 6.6124 5.0399 1.4292 23 6 5.6138 5.4485 0.5652 24 6 5.2680 6.7849 0.4911 25 6 5.9281 7.7140 1.2733 26 6 6.9303 7.3061 2.1336 27 6 7.2725 5.9690 2.2115 28 6 4.6781 2.8345 2.0398 29 8 4.5738 3.5110 3.0441 30 7 3.6966 2.0765 1.5433 31 6 2.2624 1.7814 1.4480 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 3.6040 2.1941 -1.2115 36 1 3.5188 0.4030 -1.3066 37 1 8.3998 3.9583 3.0949 38 1 6.7951 3.4285 3.6540 39 1 9.1326 1.7740 5.9685 40 1 5.1009 4.7232 -0.0490 41 1 4.4852 7.1037 -0.1813 42 1 5.6609 8.7586 1.2123 43 1 7.4463 8.0319 2.7444 44 1 8.0555 5.6502 2.8835 45 1 1.9949 0.9938 2.1526 46 1 1.6811 2.6803 1.6529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365340707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:40 Heat of formation + Delta-G solvation = -51.710787 kcal Electronic energy + Delta-G solvation = -31526.801457 eV Core-core repulsion = 27382.616624 eV Total energy + Delta-G solvation = -4144.184833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.69735 -40.47651 -39.64159 -39.47808 -37.58793 -36.95468 -35.24551 -33.81264 -31.94101 -31.65514 -30.69926 -29.98044 -27.48713 -26.87156 -26.05544 -24.54644 -23.20345 -22.99802 -22.81728 -21.54933 -20.72531 -19.14118 -18.38085 -18.27941 -17.75827 -17.30103 -17.13789 -17.02621 -16.53021 -16.38926 -15.90581 -15.87996 -15.64321 -15.60673 -15.29031 -14.76590 -14.61367 -14.45042 -14.33243 -14.10695 -13.94569 -13.73432 -13.47241 -13.15033 -12.99732 -12.77661 -12.76547 -12.61855 -12.58453 -12.19299 -12.06814 -11.85774 -11.77045 -11.63332 -11.39475 -11.16119 -10.69548 -10.64183 -10.58545 -10.03680 -9.82734 -9.61074 -8.25327 -6.36217 0.37348 0.48732 0.61820 1.02334 1.32089 1.34771 1.42939 1.86902 2.16636 2.33841 2.71466 2.88222 3.01552 3.08039 3.16453 3.53525 3.71766 3.94590 3.99245 4.01433 4.04479 4.11526 4.19528 4.25779 4.39290 4.47059 4.52914 4.57245 4.64436 4.65303 4.67951 4.72401 4.74672 4.80446 4.90764 5.01039 5.03136 5.13474 5.32448 5.48608 5.51630 5.59055 5.61726 5.73076 5.73704 6.09448 6.11952 6.22096 6.26742 6.38357 6.75331 7.11499 7.31267 8.86013 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007790 B = 0.005393 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3593.296253 B = 5190.882447 C = 7728.171843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.392 6.392 3 C 0.088 3.912 4 H 0.122 0.878 5 C -0.099 4.099 6 C 0.051 3.949 7 H 0.143 0.857 8 C 0.522 3.478 9 O -0.499 6.499 10 N -0.557 5.557 11 C 0.197 3.803 12 H 0.095 0.905 13 C 0.027 3.973 14 C -0.537 4.537 15 H 0.047 0.953 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.125 4.125 28 C 0.737 3.263 29 O -0.565 6.565 30 N -0.639 5.639 31 C 0.131 3.869 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.021 0.979 38 H 0.008 0.992 39 H 0.264 0.736 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.144 0.856 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.582 2.930 -14.262 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.310 6.310 3 C 0.029 3.971 4 H 0.140 0.860 5 C -0.137 4.137 6 C -0.057 4.057 7 H 0.161 0.839 8 C 0.311 3.689 9 O -0.372 6.372 10 N -0.300 5.300 11 C 0.096 3.904 12 H 0.113 0.887 13 C -0.011 4.011 14 C -0.575 4.575 15 H 0.066 0.934 16 C -0.189 4.189 17 N -0.563 5.563 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.102 4.102 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.143 4.143 28 C 0.441 3.559 29 O -0.440 6.440 30 N -0.380 5.380 31 C 0.012 3.988 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.171 0.829 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.129 0.871 45 H 0.104 0.896 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.129 3.176 -13.774 22.989 hybrid contribution 0.890 -0.937 0.961 1.610 sum -17.239 2.239 -12.814 21.596 Atomic orbital electron populations 1.23072 0.78962 1.04094 1.01439 1.87981 1.21838 1.26565 1.94641 1.23275 0.94975 0.86319 0.92534 0.86009 1.22608 0.90899 1.06090 0.94103 1.23534 0.90293 0.97512 0.94389 0.83949 1.21245 0.89315 0.78724 0.79645 1.90713 1.48639 1.64509 1.33304 1.46616 1.15650 1.37965 1.29749 1.20115 0.83631 0.86082 1.00565 0.88709 1.19318 0.95208 0.96077 0.90448 1.21320 1.40210 0.97866 0.98061 0.93428 1.25811 0.95890 1.02041 0.95117 1.70079 1.45109 1.38002 1.03103 0.85655 0.78947 0.79776 0.77675 1.19076 1.20255 1.19629 1.20094 0.98220 0.94054 0.97784 1.20940 0.97319 0.97287 0.98512 1.21403 1.00291 0.91892 0.99944 1.21517 0.95517 1.00988 0.95676 1.21434 0.98357 0.94769 0.99358 1.21267 1.00507 0.94229 0.98311 1.14896 0.79554 0.79430 0.82040 1.90926 1.82218 1.46559 1.24306 1.48338 1.07968 1.35925 1.45790 1.22771 0.74344 1.02462 0.99237 0.92041 0.88707 0.92924 0.88103 0.86259 0.96143 0.97336 0.92673 0.87170 0.82931 0.82469 0.83805 0.87107 0.89581 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.87 113.37 1.23 1.40 16 2 O -0.39 -5.76 10.32 -148.98 -1.54 -7.30 16 3 C 0.09 1.21 3.48 31.82 0.11 1.32 16 4 H 0.12 0.91 7.85 -2.38 -0.02 0.89 16 5 C -0.10 -1.75 6.34 31.71 0.20 -1.55 16 6 C 0.05 1.43 4.02 44.22 0.18 1.61 16 7 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 8 C 0.52 19.52 7.66 87.61 0.67 20.19 16 9 O -0.50 -20.51 17.55 -2.90 -0.05 -20.56 16 10 N -0.56 -23.55 1.41 -755.16 -1.07 -24.62 16 11 C 0.20 9.17 2.52 44.25 0.11 9.28 16 12 H 0.10 4.50 7.66 -2.39 -0.02 4.48 16 13 C 0.03 1.50 3.81 29.85 0.11 1.62 16 14 C -0.54 -31.89 8.84 25.60 0.23 -31.66 16 15 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 16 C 0.01 0.61 5.46 84.66 0.46 1.08 16 17 N -0.92 -57.94 13.29 21.45 0.28 -57.65 16 18 Si 0.96 46.27 29.54 68.60 2.03 48.30 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 22 C -0.10 -4.11 4.83 -19.87 -0.10 -4.21 16 23 C -0.12 -4.15 8.82 22.27 0.20 -3.96 16 24 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 25 C -0.12 -3.06 10.05 22.27 0.22 -2.83 16 26 C -0.12 -3.74 10.05 22.27 0.22 -3.51 16 27 C -0.12 -4.93 9.13 22.27 0.20 -4.73 16 28 C 0.74 30.99 7.36 179.60 1.32 32.31 16 29 O -0.57 -28.68 15.78 -3.85 -0.06 -28.74 16 30 N -0.64 -19.71 4.07 -810.95 -3.30 -23.01 16 31 C 0.13 2.57 7.42 86.84 0.64 3.22 16 32 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.10 1.65 8.01 -2.39 -0.02 1.63 16 36 H 0.12 1.83 8.09 -2.38 -0.02 1.81 16 37 H 0.02 1.20 6.23 -2.39 -0.01 1.18 16 38 H 0.01 0.53 6.56 -2.39 -0.02 0.51 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.11 3.55 7.46 -2.91 -0.02 3.53 16 41 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 44 H 0.11 4.82 5.97 -2.91 -0.02 4.80 16 45 H 0.09 1.69 7.98 -2.38 -0.02 1.67 16 46 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -82.43 380.69 3.54 -78.90 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.00 Total: 18.06 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.25 Total: 16.63 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.08 Total: -105.28 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -1.65 Total: -56.61 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -82.43 3.54 -78.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365340707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.186 kcal (2) G-P(sol) polarization free energy of solvation -82.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds