Wall clock time and date at job start Wed Apr 1 2020 02:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00041 * 2 1 4 4 H 1.08999 * 110.31713 * 329.24738 * 3 2 1 5 5 C 1.55008 * 110.45085 * 206.97412 * 3 2 1 6 6 C 1.54259 * 102.36518 * 218.97560 * 5 3 2 7 7 H 1.09002 * 112.81883 * 277.25607 * 6 5 3 8 8 C 1.50940 * 111.74147 * 148.40471 * 6 5 3 9 9 O 1.21235 * 127.34661 * 57.60288 * 8 6 5 10 10 N 1.35150 * 105.29278 * 237.72988 * 8 6 5 11 11 C 1.46500 * 124.34108 * 182.52571 * 10 8 6 12 12 H 1.09008 * 109.47091 * 356.45541 * 11 10 8 13 13 C 1.52996 * 109.47449 * 116.45704 * 11 10 8 14 14 C 1.50705 * 109.46879 * 295.00013 * 13 11 10 15 15 H 1.07999 * 119.99939 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99966 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00240 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47183 * 89.99906 * 18 16 14 20 20 H 1.48500 * 109.47133 * 210.00120 * 18 16 14 21 21 H 1.48502 * 109.47128 * 329.99890 * 18 16 14 22 22 C 1.50698 * 109.47315 * 236.46288 * 11 10 8 23 23 C 1.38230 * 120.00139 * 33.40148 * 22 11 10 24 24 C 1.38236 * 120.00002 * 180.26252 * 23 22 11 25 25 C 1.38240 * 120.00077 * 359.51060 * 24 23 22 26 26 C 1.38235 * 119.99520 * 0.46775 * 25 24 23 27 27 C 1.38236 * 120.00377 * 359.76534 * 26 25 24 28 28 C 1.34322 * 111.32531 * 2.26213 * 10 8 6 29 29 O 1.21531 * 124.23083 * 191.47209 * 28 10 8 30 30 N 1.33678 * 111.53624 * 11.44490 * 28 10 8 31 31 C 1.46564 * 149.45317 * 156.77535 * 30 28 10 32 32 H 1.09005 * 109.46716 * 299.99662 * 1 2 3 33 33 H 1.08996 * 109.47692 * 59.99086 * 1 2 3 34 34 H 1.09004 * 109.47333 * 180.02562 * 1 2 3 35 35 H 1.09006 * 110.82476 * 337.19170 * 5 3 2 36 36 H 1.09004 * 110.83079 * 100.55386 * 5 3 2 37 37 H 1.08997 * 109.47020 * 54.99530 * 13 11 10 38 38 H 1.09001 * 109.47477 * 175.00674 * 13 11 10 39 39 H 0.96995 * 120.00194 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.00314 * 359.97438 * 23 22 11 41 41 H 1.08005 * 120.00253 * 179.73191 * 24 23 22 42 42 H 1.07997 * 120.00208 * 180.26478 * 25 24 23 43 43 H 1.08001 * 119.99726 * 179.78965 * 26 25 24 44 44 H 1.07996 * 120.00423 * 179.97438 * 27 26 25 45 45 H 1.08997 * 110.02356 * 331.30826 * 31 30 28 46 46 H 1.09001 * 110.01856 * 92.66601 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3617 2.0085 -0.5227 5 6 3.4130 1.2737 -0.6588 6 6 4.2179 2.2432 0.2311 7 1 4.0749 3.2879 -0.0449 8 6 5.6713 1.8457 0.3188 9 8 6.4529 1.7085 -0.5979 10 7 5.9147 1.6725 1.6368 11 6 7.2242 1.3304 2.1975 12 1 7.9380 1.1792 1.3876 13 6 7.7074 2.4697 3.0971 14 6 7.9406 3.7034 2.2636 15 1 7.7616 3.6775 1.1988 16 6 8.3814 4.8655 2.8605 17 7 8.5845 5.9423 2.1332 18 14 8.6903 4.9104 4.7022 19 1 10.0987 4.5284 4.9775 20 1 8.4407 6.2824 5.2127 21 1 7.7769 3.9561 5.3808 22 6 7.1087 0.0650 3.0077 23 6 6.2180 -0.9209 2.6266 24 6 6.1082 -2.0793 3.3729 25 6 6.8964 -2.2561 4.4947 26 6 7.7874 -1.2703 4.8756 27 6 7.8938 -0.1099 4.1321 28 6 4.8033 1.8599 2.3675 29 8 4.7902 1.9604 3.5786 30 7 3.7135 1.9227 1.5959 31 6 2.2623 1.7811 1.4472 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 -0.3634 -1.0277 0.0005 35 1 3.8366 0.2701 -0.6203 36 1 3.3668 1.6339 -1.6865 37 1 6.9520 2.6802 3.8541 38 1 8.6384 2.1787 3.5836 39 1 8.8949 6.7596 2.5531 40 1 5.6045 -0.7843 1.7483 41 1 5.4091 -2.8478 3.0775 42 1 6.8136 -3.1630 5.0754 43 1 8.4008 -1.4070 5.7540 44 1 8.5896 0.6605 4.4299 45 1 1.8851 1.0421 2.1540 46 1 1.7745 2.7413 1.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365340718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:44 Heat of formation + Delta-G solvation = -24.858249 kcal Electronic energy + Delta-G solvation = -31657.912141 eV Core-core repulsion = 27514.891722 eV Total energy + Delta-G solvation = -4143.020420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31211 -39.33526 -38.60003 -38.01345 -36.56786 -35.39856 -33.46692 -32.17830 -30.79777 -30.55965 -29.49522 -28.81227 -26.97140 -25.28867 -24.77488 -22.80269 -21.91545 -21.62984 -21.43584 -20.41505 -19.28606 -17.83378 -17.21580 -16.88147 -16.47169 -16.19395 -15.92527 -15.87316 -15.19152 -14.94082 -14.73637 -14.61693 -14.31321 -14.21420 -14.07463 -13.79312 -13.19197 -13.10057 -12.99185 -12.81332 -12.54161 -12.30917 -12.24567 -12.11960 -11.92037 -11.87456 -11.53396 -11.25695 -11.01869 -10.81348 -10.64391 -10.37951 -10.19539 -10.01239 -9.82312 -9.68128 -9.23144 -9.07758 -8.77561 -8.63423 -8.54248 -8.35217 -6.05804 -4.04757 1.58910 1.68215 2.08789 2.32236 3.21667 3.31127 3.36903 3.39708 3.47455 3.50598 4.00583 4.09497 4.22379 4.45591 4.55391 4.70544 4.87372 4.98897 5.00893 5.04196 5.10478 5.13621 5.20665 5.25332 5.28291 5.35916 5.37260 5.42163 5.49217 5.68727 5.73997 5.74771 5.78527 5.92042 6.06700 6.14558 6.27209 6.36239 6.69256 6.74045 6.80488 6.86630 6.93479 7.06896 7.26630 7.31680 7.68215 7.71924 7.85138 8.46157 8.56266 8.96539 9.55596 11.06992 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.004958 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.660173 B = 5645.561303 C = 7394.715607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.073 3.927 4 H 0.090 0.910 5 C -0.107 4.107 6 C 0.046 3.954 7 H 0.138 0.862 8 C 0.534 3.466 9 O -0.470 6.470 10 N -0.551 5.551 11 C 0.201 3.799 12 H 0.114 0.886 13 C -0.028 4.028 14 C -0.521 4.521 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.899 5.899 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.260 1.260 22 C -0.081 4.081 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.101 4.101 28 C 0.747 3.253 29 O -0.518 6.518 30 N -0.646 5.646 31 C 0.142 3.858 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.132 0.868 45 H 0.088 0.912 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.150 -13.454 -3.246 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.293 6.293 3 C 0.014 3.986 4 H 0.108 0.892 5 C -0.146 4.146 6 C -0.063 4.063 7 H 0.155 0.845 8 C 0.321 3.679 9 O -0.340 6.340 10 N -0.294 5.294 11 C 0.101 3.899 12 H 0.132 0.868 13 C -0.066 4.066 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.128 4.128 17 N -0.538 5.538 18 Si 0.697 3.303 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.185 1.185 22 C -0.082 4.082 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.119 4.119 28 C 0.451 3.549 29 O -0.389 6.389 30 N -0.389 5.389 31 C 0.020 3.980 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.150 0.850 45 H 0.106 0.894 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.590 -13.507 -2.734 20.069 hybrid contribution -0.068 0.628 0.971 1.158 sum -14.657 -12.880 -1.763 19.591 Atomic orbital electron populations 1.22861 0.80737 1.03097 1.00232 1.88009 1.19916 1.26659 1.94720 1.23431 0.95320 0.85564 0.94278 0.89226 1.22502 0.92637 1.00501 0.98959 1.23411 0.92836 1.02483 0.87614 0.84501 1.20416 0.89572 0.75329 0.82581 1.90759 1.53754 1.48086 1.41412 1.46515 1.10744 1.64138 1.08046 1.20238 0.80398 0.92295 0.96979 0.86842 1.20136 0.97162 0.93086 0.96202 1.20967 1.45420 0.93662 0.95827 0.90974 1.24918 0.94665 0.95399 0.97833 1.69903 1.46374 1.01708 1.35776 0.86900 0.79118 0.77750 0.86483 1.20100 1.21302 1.18473 1.20241 0.96613 0.95280 0.96051 1.20877 0.98641 0.93754 0.99662 1.20996 0.99616 0.97414 0.95866 1.21052 0.97097 0.99081 0.97341 1.21111 0.99014 0.94010 0.99702 1.21222 0.99385 0.97520 0.93773 1.14791 0.78696 0.77003 0.84414 1.90940 1.84527 1.52586 1.10835 1.48176 1.06186 1.74928 1.09587 1.22234 0.76201 1.01975 0.97561 0.93742 0.93671 0.89443 0.88940 0.88193 0.93556 0.94921 0.92709 0.87190 0.86576 0.86554 0.86186 0.84979 0.89387 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.87 101.05 1.10 1.26 16 2 O -0.37 -3.51 10.32 -35.23 -0.36 -3.87 16 3 C 0.07 0.63 3.48 -24.93 -0.09 0.54 16 4 H 0.09 0.51 7.85 -51.93 -0.41 0.11 16 5 C -0.11 -1.11 6.33 -25.01 -0.16 -1.27 16 6 C 0.05 0.64 4.04 -66.93 -0.27 0.37 16 7 H 0.14 1.70 8.14 -51.93 -0.42 1.28 16 8 C 0.53 9.90 7.64 -10.70 -0.08 9.82 16 9 O -0.47 -9.70 17.55 5.60 0.10 -9.61 16 10 N -0.55 -11.07 1.43 -115.07 -0.16 -11.23 16 11 C 0.20 4.25 2.53 -69.08 -0.17 4.08 16 12 H 0.11 2.43 7.67 -51.92 -0.40 2.04 16 13 C -0.03 -0.69 2.89 -27.88 -0.08 -0.77 16 14 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 15 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 18 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 22 C -0.08 -1.52 4.91 -104.63 -0.51 -2.03 16 23 C -0.11 -1.88 8.79 -39.59 -0.35 -2.23 16 24 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 25 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 26 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 27 C -0.10 -1.77 9.13 -39.58 -0.36 -2.13 16 28 C 0.75 14.95 7.25 -88.30 -0.64 14.31 16 29 O -0.52 -12.14 15.85 5.34 0.08 -12.05 16 30 N -0.65 -9.95 4.11 -169.89 -0.70 -10.64 16 31 C 0.14 1.51 7.41 -3.27 -0.02 1.48 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.04 0.21 8.10 -51.93 -0.42 -0.21 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 1.22 5.58 -51.93 -0.29 0.93 16 38 H 0.03 0.76 5.66 -51.93 -0.29 0.47 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.11 1.83 7.43 -52.49 -0.39 1.44 16 41 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.13 2.33 5.96 -52.49 -0.31 2.01 16 45 H 0.09 0.95 7.97 -51.93 -0.41 0.53 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -36.29 377.08 -8.82 -45.11 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.31 Total: 2.34 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -3.26 Total: 3.85 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.09 Total: -48.84 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.18 Total: -25.53 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.29 -8.82 -45.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365340718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.251 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds