Wall clock time and date at job start Wed Apr 1 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00041 * 2 1 4 4 H 1.08999 * 110.31713 * 329.24738 * 3 2 1 5 5 C 1.55008 * 110.45085 * 206.97412 * 3 2 1 6 6 C 1.54259 * 102.36518 * 218.97560 * 5 3 2 7 7 H 1.09002 * 112.81883 * 277.25607 * 6 5 3 8 8 C 1.50940 * 111.74147 * 148.40471 * 6 5 3 9 9 O 1.21235 * 127.34661 * 57.60288 * 8 6 5 10 10 N 1.35150 * 105.29278 * 237.72988 * 8 6 5 11 11 C 1.46500 * 124.34108 * 182.52571 * 10 8 6 12 12 H 1.09008 * 109.47091 * 356.45541 * 11 10 8 13 13 C 1.52996 * 109.47449 * 116.45704 * 11 10 8 14 14 C 1.50705 * 109.46879 * 295.00013 * 13 11 10 15 15 H 1.07999 * 119.99939 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99966 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00240 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47183 * 89.99906 * 18 16 14 20 20 H 1.48500 * 109.47133 * 210.00120 * 18 16 14 21 21 H 1.48502 * 109.47128 * 329.99890 * 18 16 14 22 22 C 1.50698 * 109.47315 * 236.46288 * 11 10 8 23 23 C 1.38230 * 120.00139 * 33.40148 * 22 11 10 24 24 C 1.38236 * 120.00002 * 180.26252 * 23 22 11 25 25 C 1.38240 * 120.00077 * 359.51060 * 24 23 22 26 26 C 1.38235 * 119.99520 * 0.46775 * 25 24 23 27 27 C 1.38236 * 120.00377 * 359.76534 * 26 25 24 28 28 C 1.34322 * 111.32531 * 2.26213 * 10 8 6 29 29 O 1.21531 * 124.23083 * 191.47209 * 28 10 8 30 30 N 1.33678 * 111.53624 * 11.44490 * 28 10 8 31 31 C 1.46564 * 149.45317 * 156.77535 * 30 28 10 32 32 H 1.09005 * 109.46716 * 299.99662 * 1 2 3 33 33 H 1.08996 * 109.47692 * 59.99086 * 1 2 3 34 34 H 1.09004 * 109.47333 * 180.02562 * 1 2 3 35 35 H 1.09006 * 110.82476 * 337.19170 * 5 3 2 36 36 H 1.09004 * 110.83079 * 100.55386 * 5 3 2 37 37 H 1.08997 * 109.47020 * 54.99530 * 13 11 10 38 38 H 1.09001 * 109.47477 * 175.00674 * 13 11 10 39 39 H 0.96995 * 120.00194 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.00314 * 359.97438 * 23 22 11 41 41 H 1.08005 * 120.00253 * 179.73191 * 24 23 22 42 42 H 1.07997 * 120.00208 * 180.26478 * 25 24 23 43 43 H 1.08001 * 119.99726 * 179.78965 * 26 25 24 44 44 H 1.07996 * 120.00423 * 179.97438 * 27 26 25 45 45 H 1.08997 * 110.02356 * 331.30826 * 31 30 28 46 46 H 1.09001 * 110.01856 * 92.66601 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3617 2.0085 -0.5227 5 6 3.4130 1.2737 -0.6588 6 6 4.2179 2.2432 0.2311 7 1 4.0749 3.2879 -0.0449 8 6 5.6713 1.8457 0.3188 9 8 6.4529 1.7085 -0.5979 10 7 5.9147 1.6725 1.6368 11 6 7.2242 1.3304 2.1975 12 1 7.9380 1.1792 1.3876 13 6 7.7074 2.4697 3.0971 14 6 7.9406 3.7034 2.2636 15 1 7.7616 3.6775 1.1988 16 6 8.3814 4.8655 2.8605 17 7 8.5845 5.9423 2.1332 18 14 8.6903 4.9104 4.7022 19 1 10.0987 4.5284 4.9775 20 1 8.4407 6.2824 5.2127 21 1 7.7769 3.9561 5.3808 22 6 7.1087 0.0650 3.0077 23 6 6.2180 -0.9209 2.6266 24 6 6.1082 -2.0793 3.3729 25 6 6.8964 -2.2561 4.4947 26 6 7.7874 -1.2703 4.8756 27 6 7.8938 -0.1099 4.1321 28 6 4.8033 1.8599 2.3675 29 8 4.7902 1.9604 3.5786 30 7 3.7135 1.9227 1.5959 31 6 2.2623 1.7811 1.4472 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 -0.3634 -1.0277 0.0005 35 1 3.8366 0.2701 -0.6203 36 1 3.3668 1.6339 -1.6865 37 1 6.9520 2.6802 3.8541 38 1 8.6384 2.1787 3.5836 39 1 8.8949 6.7596 2.5531 40 1 5.6045 -0.7843 1.7483 41 1 5.4091 -2.8478 3.0775 42 1 6.8136 -3.1630 5.0754 43 1 8.4008 -1.4070 5.7540 44 1 8.5896 0.6605 4.4299 45 1 1.8851 1.0421 2.1540 46 1 1.7745 2.7413 1.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365340718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:43 Heat of formation + Delta-G solvation = -49.323362 kcal Electronic energy + Delta-G solvation = -31658.973028 eV Core-core repulsion = 27514.891722 eV Total energy + Delta-G solvation = -4144.081307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.70384 -40.50613 -39.64625 -39.49239 -37.65471 -37.00184 -35.22221 -33.95259 -32.00260 -31.70329 -30.95660 -30.16084 -27.59855 -26.90313 -25.95307 -24.33147 -23.14135 -22.99261 -22.74159 -21.61599 -20.73383 -19.37285 -18.62017 -18.35404 -17.76470 -17.36324 -17.24321 -17.04898 -16.36189 -16.33614 -15.99266 -15.81379 -15.72654 -15.59095 -15.46258 -14.92145 -14.71638 -14.49329 -14.45423 -14.26925 -13.94075 -13.73993 -13.42826 -13.22906 -13.11217 -12.78343 -12.76400 -12.65756 -12.38802 -12.18045 -12.03579 -11.93661 -11.83312 -11.62584 -11.44135 -11.17367 -10.81312 -10.79151 -10.67037 -9.96267 -9.86496 -9.66226 -8.34817 -6.38375 0.32997 0.44983 0.61755 1.01097 1.27674 1.31438 1.44575 1.80286 2.14527 2.30267 2.69478 2.84206 3.00228 3.02472 3.12503 3.58370 3.62149 3.90194 3.92134 4.02712 4.06693 4.10348 4.20654 4.22763 4.31584 4.38902 4.46245 4.53583 4.58630 4.60775 4.65808 4.67152 4.69969 4.87439 4.91531 4.96501 4.98514 5.05670 5.12559 5.27934 5.46786 5.53455 5.56475 5.62527 5.66978 6.07059 6.15726 6.19272 6.25577 6.38122 6.65026 7.06902 7.24920 8.81361 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.004958 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.660173 B = 5645.561303 C = 7394.715607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.398 6.398 3 C 0.088 3.912 4 H 0.133 0.867 5 C -0.100 4.100 6 C 0.052 3.948 7 H 0.159 0.841 8 C 0.520 3.480 9 O -0.503 6.503 10 N -0.560 5.560 11 C 0.203 3.797 12 H 0.094 0.906 13 C -0.015 4.015 14 C -0.523 4.523 15 H 0.032 0.968 16 C 0.018 3.982 17 N -0.942 5.942 18 Si 0.937 3.063 19 H -0.256 1.256 20 H -0.281 1.281 21 H -0.260 1.260 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.124 4.124 28 C 0.739 3.261 29 O -0.563 6.563 30 N -0.641 5.641 31 C 0.130 3.870 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.028 0.972 38 H 0.043 0.957 39 H 0.267 0.733 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.461 -15.307 -2.295 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.317 6.317 3 C 0.029 3.971 4 H 0.150 0.850 5 C -0.138 4.138 6 C -0.056 4.056 7 H 0.176 0.824 8 C 0.309 3.691 9 O -0.375 6.375 10 N -0.303 5.303 11 C 0.102 3.898 12 H 0.111 0.889 13 C -0.053 4.053 14 C -0.561 4.561 15 H 0.050 0.950 16 C -0.180 4.180 17 N -0.582 5.582 18 Si 0.760 3.240 19 H -0.180 1.180 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.143 4.143 28 C 0.443 3.557 29 O -0.438 6.438 30 N -0.383 5.383 31 C 0.011 3.989 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.140 0.860 45 H 0.104 0.896 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.956 -15.379 -1.825 22.964 hybrid contribution 0.596 1.135 0.591 1.412 sum -16.360 -14.243 -1.234 21.727 Atomic orbital electron populations 1.23071 0.78878 1.04003 1.01587 1.87986 1.21973 1.27004 1.94696 1.23415 0.94797 0.86381 0.92522 0.84973 1.22542 0.92954 0.98507 0.99830 1.23644 0.89591 1.04465 0.87930 0.82427 1.21305 0.91634 0.74438 0.81730 1.90718 1.55333 1.49482 1.42012 1.46635 1.10675 1.64149 1.08880 1.19928 0.81035 0.92737 0.96126 0.88855 1.19921 0.97060 0.92648 0.95667 1.21149 1.44853 0.95576 0.94482 0.94963 1.25780 0.94498 0.94921 1.02807 1.70036 1.47760 1.02491 1.37930 0.85854 0.79886 0.77869 0.80360 1.18029 1.20680 1.18377 1.20077 0.98655 0.94754 0.96955 1.20908 0.98478 0.94593 1.00158 1.21375 0.99882 0.96850 0.95537 1.21531 0.95352 0.99911 0.96745 1.21472 0.99233 0.92887 0.99945 1.21303 0.99706 0.98929 0.94316 1.14934 0.79594 0.76959 0.84172 1.90885 1.85329 1.54971 1.12570 1.48346 1.07292 1.73348 1.09304 1.22778 0.73193 1.03575 0.99331 0.92811 0.91819 0.88941 0.90641 0.85226 0.95332 0.93933 0.92395 0.87925 0.83570 0.82475 0.83160 0.85982 0.89582 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.87 113.37 1.23 1.41 16 2 O -0.40 -6.34 10.32 -148.98 -1.54 -7.88 16 3 C 0.09 1.22 3.48 31.76 0.11 1.33 16 4 H 0.13 0.82 7.85 -2.39 -0.02 0.80 16 5 C -0.10 -1.88 6.33 31.71 0.20 -1.68 16 6 C 0.05 1.43 4.04 44.27 0.18 1.61 16 7 H 0.16 3.76 8.14 -2.39 -0.02 3.74 16 8 C 0.52 20.38 7.64 87.67 0.67 21.05 16 9 O -0.50 -22.23 17.55 -2.89 -0.05 -22.28 16 10 N -0.56 -23.90 1.43 -754.72 -1.08 -24.98 16 11 C 0.20 9.20 2.53 44.24 0.11 9.31 16 12 H 0.09 4.43 7.67 -2.38 -0.02 4.42 16 13 C -0.02 -0.79 2.89 29.85 0.09 -0.70 16 14 C -0.52 -31.39 9.39 25.60 0.24 -31.15 16 15 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 16 C 0.02 1.07 5.47 84.66 0.46 1.54 16 17 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 18 Si 0.94 46.58 27.47 68.60 1.88 48.47 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.26 -12.80 6.54 99.48 0.65 -12.15 16 22 C -0.10 -4.05 4.91 -19.87 -0.10 -4.14 16 23 C -0.12 -4.22 8.79 22.27 0.20 -4.02 16 24 C -0.12 -3.22 10.05 22.27 0.22 -2.99 16 25 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 26 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 27 C -0.12 -4.41 9.13 22.27 0.20 -4.21 16 28 C 0.74 30.72 7.25 179.54 1.30 32.03 16 29 O -0.56 -27.40 15.85 -3.81 -0.06 -27.46 16 30 N -0.64 -19.64 4.11 -810.31 -3.33 -22.97 16 31 C 0.13 2.49 7.41 86.85 0.64 3.14 16 32 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 34 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.07 1.72 7.95 -2.38 -0.02 1.70 16 36 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.03 1.57 5.58 -2.39 -0.01 1.56 16 38 H 0.04 2.07 5.66 -2.39 -0.01 2.06 16 39 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.10 3.55 7.43 -2.91 -0.02 3.53 16 41 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.12 4.43 5.96 -2.91 -0.02 4.42 16 45 H 0.09 1.71 7.97 -2.39 -0.02 1.69 16 46 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -85.27 377.08 3.28 -81.99 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.94 Total: 18.13 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 6.21 Total: 16.85 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -4.11 Total: -107.82 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.65 Total: -57.61 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Total: -85.27 3.28 -81.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365340718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.664 kcal (2) G-P(sol) polarization free energy of solvation -85.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds