Wall clock time and date at job start Wed Apr 1 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47159 * 269.72786 * 3 2 1 5 5 H 1.48501 * 109.47187 * 29.72289 * 3 2 1 6 6 H 1.48500 * 109.47448 * 149.72585 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.72790 * 2 1 3 8 8 H 1.07998 * 119.99977 * 0.27051 * 7 2 1 9 9 C 1.50698 * 119.99794 * 180.27556 * 7 2 1 10 10 N 1.46505 * 109.46995 * 179.97438 * 9 7 2 11 11 S 1.65600 * 120.00180 * 164.63315 * 10 9 7 12 12 O 1.42103 * 104.27805 * 179.69934 * 11 10 9 13 13 O 1.42100 * 104.27832 * 307.56210 * 11 10 9 14 14 C 1.81405 * 104.44595 * 63.62847 * 11 10 9 15 15 H 1.08996 * 109.49877 * 298.24631 * 14 11 10 16 16 C 1.53044 * 109.49834 * 178.17306 * 14 11 10 17 17 C 1.53032 * 109.53834 * 178.68554 * 16 14 11 18 18 C 1.53196 * 109.31425 * 61.36582 * 17 16 14 19 19 N 1.46924 * 108.77824 * 305.36494 * 18 17 16 20 20 C 1.34771 * 120.63369 * 233.61046 * 19 18 17 21 21 O 1.21277 * 120.00277 * 180.02562 * 20 19 18 22 22 C 1.50705 * 119.99808 * 359.97438 * 20 19 18 23 23 C 1.54268 * 110.03244 * 297.90988 * 22 20 19 24 24 C 1.54956 * 104.15901 * 217.13547 * 23 22 20 25 25 C 1.54890 * 102.78034 * 37.89038 * 24 23 22 26 26 C 1.53877 * 110.03108 * 180.69290 * 22 20 19 27 27 C 1.46940 * 118.76238 * 53.58419 * 19 18 17 28 28 H 0.97001 * 119.99817 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46796 * 299.99374 * 9 7 2 30 30 H 1.09001 * 109.47449 * 59.99862 * 9 7 2 31 31 H 0.97001 * 119.99590 * 344.63763 * 10 9 7 32 32 H 1.08997 * 109.45625 * 298.70880 * 16 14 11 33 33 H 1.08994 * 109.45634 * 58.67959 * 16 14 11 34 34 H 1.09003 * 109.49702 * 181.31828 * 17 16 14 35 35 H 1.09000 * 109.49824 * 301.38694 * 17 16 14 36 36 H 1.09004 * 109.58112 * 65.15274 * 18 17 16 37 37 H 1.08996 * 109.58814 * 185.57328 * 18 17 16 38 38 H 1.09000 * 110.01554 * 59.29885 * 22 20 19 39 39 H 1.08999 * 110.48831 * 335.78383 * 23 22 20 40 40 H 1.09002 * 110.48468 * 98.42635 * 23 22 20 41 41 H 1.09004 * 110.72522 * 279.57475 * 24 23 22 42 42 H 1.09006 * 110.92563 * 156.29825 * 24 23 22 43 43 H 1.09000 * 110.49029 * 203.40776 * 25 24 23 44 44 H 1.08998 * 110.59847 * 80.81739 * 25 24 23 45 45 H 1.08998 * 110.02861 * 238.57268 * 26 22 20 46 46 H 1.09002 * 110.02993 * 359.95445 * 26 22 20 47 47 H 1.09000 * 109.61385 * 186.64158 * 27 19 18 48 48 H 1.08999 * 109.55790 * 66.21504 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5024 2.0431 -1.4000 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4419 0.7058 7 6 2.0045 -1.1940 0.0057 8 1 1.4645 -2.1293 0.0057 9 6 3.5115 -1.1940 0.0119 10 7 3.9999 -2.5752 0.0178 11 16 5.5812 -2.8960 -0.3547 12 8 5.6884 -4.3084 -0.2413 13 8 5.7873 -2.2432 -1.6000 14 6 6.5301 -2.0781 0.9573 15 1 6.3426 -1.0048 0.9269 16 6 8.0231 -2.3421 0.7484 17 6 8.8266 -1.6255 1.8359 18 6 8.4257 -2.1762 3.2081 19 7 6.9688 -2.0582 3.3577 20 6 6.4367 -1.4337 4.4269 21 8 5.2325 -1.3433 4.5392 22 6 7.3380 -0.8486 5.4836 23 6 8.1725 -1.9655 6.1438 24 6 8.2533 -1.5479 7.6338 25 6 6.8453 -0.9607 7.9019 26 6 6.4946 -0.2097 6.6008 27 6 6.1025 -2.6335 2.3196 28 1 -0.4850 0.8401 0.0004 29 1 3.8785 -0.6823 -0.8778 30 1 3.8712 -0.6780 0.9022 31 1 3.3969 -3.3018 0.2399 32 1 8.2134 -3.4139 0.8030 33 1 8.3242 -1.9692 -0.2305 34 1 9.8910 -1.7946 1.6728 35 1 8.6180 -0.5563 1.7974 36 1 8.7168 -3.2241 3.2804 37 1 8.9211 -1.6023 3.9911 38 1 7.9973 -0.1024 5.0401 39 1 7.6695 -2.9273 6.0441 40 1 9.1690 -2.0078 5.7041 41 1 9.0224 -0.7896 7.7807 42 1 8.4389 -2.4126 8.2710 43 1 6.8740 -0.2704 8.7449 44 1 6.1261 -1.7585 8.0876 45 1 6.7453 0.8465 6.7002 46 1 5.4335 -0.3221 6.3783 47 1 5.0656 -2.3611 2.5161 48 1 6.2039 -3.7187 2.3199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408357944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:27 Heat of formation + Delta-G solvation = -120.238807 kcal Electronic energy + Delta-G solvation = -29843.325336 eV Core-core repulsion = 25831.612856 eV Total energy + Delta-G solvation = -4011.712480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74383 -38.18242 -36.97862 -36.78437 -35.64130 -34.81175 -33.35841 -32.23267 -31.62215 -29.45177 -28.93290 -27.39006 -25.77883 -23.95547 -22.28502 -22.04242 -21.04832 -20.61825 -18.99097 -18.88156 -17.81976 -17.59928 -16.63556 -16.36102 -16.12944 -15.78398 -15.53868 -15.16409 -15.01799 -14.64584 -14.41220 -14.22044 -13.82251 -13.50046 -13.48731 -13.35057 -13.11024 -12.82179 -12.50597 -12.24926 -12.05045 -11.96831 -11.81731 -11.70159 -11.66279 -11.65340 -11.36873 -11.35067 -11.16827 -11.11480 -11.00179 -10.89120 -10.75843 -10.64899 -10.37249 -9.97160 -9.73293 -9.51172 -8.89268 -8.82240 -8.48412 -6.16615 -4.17575 0.54486 2.52288 2.75447 3.20980 3.26152 3.31971 3.33917 3.97170 4.08326 4.19361 4.24972 4.32749 4.33540 4.41718 4.45588 4.56301 4.77628 4.90956 5.00598 5.03345 5.04647 5.15476 5.16934 5.17306 5.22632 5.29726 5.36793 5.39924 5.46004 5.49740 5.53140 5.63216 5.63839 5.70445 5.83282 5.85850 5.90295 6.04308 6.11608 6.14045 6.29716 6.82512 6.90835 7.22941 7.40524 7.82486 8.07745 8.39285 8.85425 9.41436 10.95973 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.004188 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.192449 B = 6684.236800 C = 8599.223391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.083 0.917 9 C 0.216 3.784 10 N -1.096 6.096 11 S 2.614 3.386 12 O -0.968 6.968 13 O -0.956 6.956 14 C -0.618 4.618 15 H 0.140 0.860 16 C -0.106 4.106 17 C -0.127 4.127 18 C 0.100 3.900 19 N -0.606 5.606 20 C 0.516 3.484 21 O -0.523 6.523 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.121 4.121 27 C 0.132 3.868 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.416 0.584 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.115 0.885 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.005 -2.708 12.950 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.101 0.899 9 C 0.091 3.909 10 N -0.858 5.858 11 S 2.704 3.296 12 O -0.958 6.958 13 O -0.945 6.945 14 C -0.726 4.726 15 H 0.158 0.842 16 C -0.145 4.145 17 C -0.167 4.167 18 C -0.023 4.023 19 N -0.340 5.340 20 C 0.304 3.696 21 O -0.399 6.399 22 C -0.133 4.133 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.159 4.159 27 C 0.009 3.991 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.252 0.748 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.133 0.867 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 22.600 -2.861 12.230 25.856 hybrid contribution 0.184 1.203 0.470 1.305 sum 22.784 -1.657 12.700 26.137 Atomic orbital electron populations 1.69873 1.06140 1.27257 1.49620 1.24842 0.94818 0.98966 0.94169 0.86905 0.80455 0.83841 0.78912 1.19679 1.20762 1.18950 1.21010 0.88006 0.95246 1.52496 0.89887 1.19473 0.98020 0.77414 0.95996 1.55250 1.25994 1.16949 1.87564 1.04816 0.74606 0.74241 0.75921 1.93548 1.86184 1.28541 1.87527 1.93591 1.85536 1.77490 1.37901 1.31035 1.09849 1.15624 1.16114 0.84151 1.21309 0.90444 1.02110 1.00625 1.21847 0.99899 1.00902 0.94011 1.21968 0.80259 1.01917 0.98110 1.47944 1.06811 1.57250 1.21985 1.20693 0.89246 0.77544 0.82120 1.90746 1.15173 1.57513 1.76428 1.21942 0.97364 0.98676 0.95300 1.22511 0.99252 0.97853 0.95803 1.22516 0.97526 1.00612 0.95469 1.22361 0.96582 0.99825 0.97377 1.22189 1.02142 0.98938 0.92640 1.21279 0.97103 0.97627 0.83133 0.92302 0.95248 0.96332 0.74837 0.90053 0.89990 0.89897 0.90918 0.90860 0.88896 0.88501 0.90950 0.90694 0.91300 0.91328 0.91521 0.91431 0.91426 0.88924 0.86732 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.96 55.43 0.77 -26.16 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.53 -14.71 9.83 -34.44 -0.34 -15.05 16 8 H 0.08 2.45 7.90 -52.49 -0.41 2.03 16 9 C 0.22 5.04 4.93 -5.19 -0.03 5.01 16 10 N -1.10 -21.57 5.64 -11.65 -0.07 -21.63 16 11 S 2.61 44.48 4.89 -107.50 -0.53 43.96 16 12 O -0.97 -17.42 17.90 -57.54 -1.03 -18.45 16 13 O -0.96 -19.31 17.54 -57.54 -1.01 -20.32 16 14 C -0.62 -8.25 2.87 -26.61 -0.08 -8.33 16 15 H 0.14 1.91 8.14 -51.93 -0.42 1.49 16 16 C -0.11 -1.07 5.17 -26.69 -0.14 -1.20 16 17 C -0.13 -0.97 6.08 -26.61 -0.16 -1.14 16 18 C 0.10 0.77 5.62 -3.71 -0.02 0.75 16 19 N -0.61 -7.11 2.97 -172.75 -0.51 -7.62 16 20 C 0.52 6.90 6.94 -10.99 -0.08 6.82 16 21 O -0.52 -9.45 14.62 5.56 0.08 -9.37 16 22 C -0.11 -1.05 2.41 -90.65 -0.22 -1.26 16 23 C -0.12 -0.82 5.13 -25.04 -0.13 -0.95 16 24 C -0.12 -0.80 6.91 -24.70 -0.17 -0.97 16 25 C -0.12 -1.00 6.83 -25.07 -0.17 -1.18 16 26 C -0.12 -1.22 6.40 -25.61 -0.16 -1.38 16 27 C 0.13 1.80 5.57 -3.70 -0.02 1.78 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.03 0.70 7.15 -51.93 -0.37 0.33 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 31 H 0.42 7.84 8.50 -34.47 -0.29 7.54 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.52 4.31 -51.93 -0.22 0.29 16 38 H 0.10 0.75 7.67 -51.93 -0.40 0.35 16 39 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 40 H 0.07 0.37 6.65 -51.93 -0.35 0.02 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.21 6.39 -51.93 -0.33 0.88 16 47 H 0.11 1.85 6.91 -51.93 -0.36 1.50 16 48 H 0.08 1.03 8.00 -51.93 -0.42 0.62 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -36.04 382.31 -10.76 -46.80 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.75 Total: 5.49 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.81 Total: -15.01 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.19 Total: -55.42 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.96 Total: -48.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: 44.48 SS G_CDS: -0.53 Total: 43.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.04 -10.76 -46.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408357944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.442 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds