Wall clock time and date at job start Wed Apr 1 2020 03:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47159 * 269.72786 * 3 2 1 5 5 H 1.48501 * 109.47187 * 29.72289 * 3 2 1 6 6 H 1.48500 * 109.47448 * 149.72585 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.72790 * 2 1 3 8 8 H 1.07998 * 119.99977 * 0.27051 * 7 2 1 9 9 C 1.50698 * 119.99794 * 180.27556 * 7 2 1 10 10 N 1.46505 * 109.46995 * 179.97438 * 9 7 2 11 11 S 1.65600 * 120.00180 * 164.63315 * 10 9 7 12 12 O 1.42103 * 104.27805 * 179.69934 * 11 10 9 13 13 O 1.42100 * 104.27832 * 307.56210 * 11 10 9 14 14 C 1.81405 * 104.44595 * 63.62847 * 11 10 9 15 15 H 1.08996 * 109.49877 * 298.24631 * 14 11 10 16 16 C 1.53044 * 109.49834 * 178.17306 * 14 11 10 17 17 C 1.53032 * 109.53834 * 178.68554 * 16 14 11 18 18 C 1.53196 * 109.31425 * 61.36582 * 17 16 14 19 19 N 1.46924 * 108.77824 * 305.36494 * 18 17 16 20 20 C 1.34771 * 120.63369 * 233.61046 * 19 18 17 21 21 O 1.21277 * 120.00277 * 180.02562 * 20 19 18 22 22 C 1.50705 * 119.99808 * 359.97438 * 20 19 18 23 23 C 1.54268 * 110.03244 * 297.90988 * 22 20 19 24 24 C 1.54956 * 104.15901 * 217.13547 * 23 22 20 25 25 C 1.54890 * 102.78034 * 37.89038 * 24 23 22 26 26 C 1.53877 * 110.03108 * 180.69290 * 22 20 19 27 27 C 1.46940 * 118.76238 * 53.58419 * 19 18 17 28 28 H 0.97001 * 119.99817 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46796 * 299.99374 * 9 7 2 30 30 H 1.09001 * 109.47449 * 59.99862 * 9 7 2 31 31 H 0.97001 * 119.99590 * 344.63763 * 10 9 7 32 32 H 1.08997 * 109.45625 * 298.70880 * 16 14 11 33 33 H 1.08994 * 109.45634 * 58.67959 * 16 14 11 34 34 H 1.09003 * 109.49702 * 181.31828 * 17 16 14 35 35 H 1.09000 * 109.49824 * 301.38694 * 17 16 14 36 36 H 1.09004 * 109.58112 * 65.15274 * 18 17 16 37 37 H 1.08996 * 109.58814 * 185.57328 * 18 17 16 38 38 H 1.09000 * 110.01554 * 59.29885 * 22 20 19 39 39 H 1.08999 * 110.48831 * 335.78383 * 23 22 20 40 40 H 1.09002 * 110.48468 * 98.42635 * 23 22 20 41 41 H 1.09004 * 110.72522 * 279.57475 * 24 23 22 42 42 H 1.09006 * 110.92563 * 156.29825 * 24 23 22 43 43 H 1.09000 * 110.49029 * 203.40776 * 25 24 23 44 44 H 1.08998 * 110.59847 * 80.81739 * 25 24 23 45 45 H 1.08998 * 110.02861 * 238.57268 * 26 22 20 46 46 H 1.09002 * 110.02993 * 359.95445 * 26 22 20 47 47 H 1.09000 * 109.61385 * 186.64158 * 27 19 18 48 48 H 1.08999 * 109.55790 * 66.21504 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5024 2.0431 -1.4000 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4419 0.7058 7 6 2.0045 -1.1940 0.0057 8 1 1.4645 -2.1293 0.0057 9 6 3.5115 -1.1940 0.0119 10 7 3.9999 -2.5752 0.0178 11 16 5.5812 -2.8960 -0.3547 12 8 5.6884 -4.3084 -0.2413 13 8 5.7873 -2.2432 -1.6000 14 6 6.5301 -2.0781 0.9573 15 1 6.3426 -1.0048 0.9269 16 6 8.0231 -2.3421 0.7484 17 6 8.8266 -1.6255 1.8359 18 6 8.4257 -2.1762 3.2081 19 7 6.9688 -2.0582 3.3577 20 6 6.4367 -1.4337 4.4269 21 8 5.2325 -1.3433 4.5392 22 6 7.3380 -0.8486 5.4836 23 6 8.1725 -1.9655 6.1438 24 6 8.2533 -1.5479 7.6338 25 6 6.8453 -0.9607 7.9019 26 6 6.4946 -0.2097 6.6008 27 6 6.1025 -2.6335 2.3196 28 1 -0.4850 0.8401 0.0004 29 1 3.8785 -0.6823 -0.8778 30 1 3.8712 -0.6780 0.9022 31 1 3.3969 -3.3018 0.2399 32 1 8.2134 -3.4139 0.8030 33 1 8.3242 -1.9692 -0.2305 34 1 9.8910 -1.7946 1.6728 35 1 8.6180 -0.5563 1.7974 36 1 8.7168 -3.2241 3.2804 37 1 8.9211 -1.6023 3.9911 38 1 7.9973 -0.1024 5.0401 39 1 7.6695 -2.9273 6.0441 40 1 9.1690 -2.0078 5.7041 41 1 9.0224 -0.7896 7.7807 42 1 8.4389 -2.4126 8.2710 43 1 6.8740 -0.2704 8.7449 44 1 6.1261 -1.7585 8.0876 45 1 6.7453 0.8465 6.7002 46 1 5.4335 -0.3221 6.3783 47 1 5.0656 -2.3611 2.5161 48 1 6.2039 -3.7187 2.3199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408357944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:26 Heat of formation + Delta-G solvation = -147.827846 kcal Electronic energy + Delta-G solvation = -29844.521686 eV Core-core repulsion = 25831.612856 eV Total energy + Delta-G solvation = -4012.908830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.64253 -38.99345 -38.25745 -37.84854 -37.12615 -36.60805 -34.31164 -34.28839 -32.47620 -30.16226 -29.55533 -29.38811 -26.63043 -24.86767 -24.04584 -23.08624 -21.61339 -21.47854 -20.34795 -19.83574 -19.38288 -18.64368 -18.01685 -17.70406 -17.51596 -16.96684 -16.60085 -16.32991 -15.93487 -15.90148 -15.37840 -15.27232 -15.18072 -14.69222 -14.55097 -14.50339 -14.17601 -14.05975 -14.00482 -13.79103 -13.32899 -13.18738 -13.14068 -12.79052 -12.72119 -12.49347 -12.46410 -12.32529 -12.10530 -12.03917 -11.93475 -11.90301 -11.74908 -11.68549 -11.62755 -11.51348 -11.34312 -10.92869 -10.74116 -10.27258 -9.77956 -8.37971 -6.44537 -0.82543 1.31043 1.33367 1.41741 1.53747 1.67537 1.97601 2.27651 2.67127 2.95347 3.00641 3.26091 3.45759 3.57105 3.63464 3.76418 3.79496 3.97413 4.08819 4.12460 4.30905 4.37216 4.44378 4.52496 4.53610 4.57203 4.59332 4.59972 4.66734 4.73102 4.80561 4.90091 4.94121 4.97712 4.99560 5.01738 5.10205 5.23494 5.25204 5.26858 5.32446 5.36521 5.47895 5.48480 6.11309 6.19973 6.34664 6.61104 7.12085 7.18587 8.78132 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.004188 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.192449 B = 6684.236800 C = 8599.223391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.542 4.542 8 H 0.048 0.952 9 C 0.226 3.774 10 N -1.108 6.108 11 S 2.620 3.380 12 O -0.979 6.979 13 O -0.990 6.990 14 C -0.589 4.589 15 H 0.142 0.858 16 C -0.116 4.116 17 C -0.122 4.122 18 C 0.089 3.911 19 N -0.601 5.601 20 C 0.506 3.494 21 O -0.586 6.586 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.126 4.126 26 C -0.127 4.127 27 C 0.126 3.874 28 H 0.271 0.729 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.416 0.584 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.051 0.949 47 H 0.081 0.919 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.270 -1.713 14.162 31.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.184 4.184 3 Si 0.757 3.243 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.581 4.581 8 H 0.066 0.934 9 C 0.100 3.900 10 N -0.867 5.867 11 S 2.715 3.285 12 O -0.970 6.970 13 O -0.980 6.980 14 C -0.702 4.702 15 H 0.160 0.840 16 C -0.155 4.155 17 C -0.161 4.161 18 C -0.031 4.031 19 N -0.334 5.334 20 C 0.296 3.704 21 O -0.465 6.465 22 C -0.126 4.126 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.163 4.163 26 C -0.165 4.165 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.250 0.750 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 27.883 -1.915 13.390 30.990 hybrid contribution -1.460 0.776 0.129 1.658 sum 26.423 -1.139 13.519 29.702 Atomic orbital electron populations 1.70018 1.08047 1.28509 1.51195 1.25800 0.95706 1.03153 0.93702 0.85902 0.79887 0.78762 0.79756 1.18419 1.20158 1.16758 1.21334 0.90577 0.94147 1.52020 0.93412 1.19178 0.95070 0.79512 0.96246 1.55240 1.27863 1.15497 1.88058 1.04595 0.73758 0.74013 0.76136 1.93526 1.86028 1.29473 1.87958 1.93543 1.85644 1.77860 1.40920 1.30728 1.11612 1.14584 1.13260 0.84047 1.21596 0.87579 1.03813 1.02511 1.21905 1.01544 1.00211 0.92441 1.22423 0.77375 1.04001 0.99317 1.48086 1.08515 1.56134 1.20671 1.21535 0.89029 0.76936 0.82906 1.90727 1.18043 1.59941 1.77834 1.22036 0.96914 0.99873 0.93818 1.22556 1.00191 0.96030 0.96161 1.22516 0.96363 1.01386 0.95115 1.22370 0.97720 0.99453 0.96780 1.22204 0.99958 1.00180 0.94167 1.21183 0.96207 0.98521 0.83965 0.92035 0.95153 0.95297 0.74997 0.88543 0.88998 0.85979 0.91223 0.88739 0.85988 0.85769 0.92394 0.87199 0.89314 0.90408 0.90437 0.93230 0.90238 0.93038 0.90060 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 2 C 0.02 0.92 5.47 84.65 0.46 1.39 16 3 Si 0.93 43.92 27.47 68.60 1.88 45.80 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 7 C -0.54 -31.50 9.83 25.60 0.25 -31.24 16 8 H 0.05 3.02 7.90 -2.91 -0.02 2.99 16 9 C 0.23 10.77 4.93 85.63 0.42 11.19 16 10 N -1.11 -45.22 5.64 -190.78 -1.08 -46.30 16 11 S 2.62 88.91 4.89 -56.49 -0.28 88.63 16 12 O -0.98 -35.11 17.90 -127.65 -2.28 -37.39 16 13 O -0.99 -39.88 17.54 -127.65 -2.24 -42.11 16 14 C -0.59 -14.75 2.87 30.68 0.09 -14.66 16 15 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 16 C -0.12 -1.90 5.17 30.62 0.16 -1.74 16 17 C -0.12 -1.21 6.08 30.67 0.19 -1.03 16 18 C 0.09 0.93 5.62 86.36 0.49 1.41 16 19 N -0.60 -12.78 2.97 -818.86 -2.43 -15.21 16 20 C 0.51 13.11 6.94 87.66 0.61 13.72 16 21 O -0.59 -22.16 14.62 -3.02 -0.04 -22.21 16 22 C -0.11 -1.70 2.41 -10.81 -0.03 -1.73 16 23 C -0.11 -1.13 5.13 31.69 0.16 -0.97 16 24 C -0.12 -1.08 6.91 31.91 0.22 -0.86 16 25 C -0.13 -1.87 6.83 31.67 0.22 -1.66 16 26 C -0.13 -2.46 6.40 31.32 0.20 -2.26 16 27 C 0.13 3.34 5.57 86.36 0.48 3.82 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 29 H 0.03 1.45 7.15 -2.39 -0.02 1.43 16 30 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 31 H 0.42 16.72 8.50 -96.74 -0.82 15.89 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.12 0.59 4.31 -2.39 -0.01 0.58 16 38 H 0.12 1.35 7.67 -2.39 -0.02 1.33 16 39 H 0.06 0.78 7.85 -2.39 -0.02 0.77 16 40 H 0.11 0.37 6.65 -2.39 -0.02 0.36 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.05 1.44 6.39 -2.39 -0.02 1.43 16 47 H 0.08 2.75 6.91 -2.39 -0.02 2.73 16 48 H 0.10 2.27 8.00 -2.39 -0.02 2.25 16 Total: -1.00 -84.30 382.31 -2.17 -86.47 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.09 Total: 25.53 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 3.92 Total: -24.61 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -3.21 Total: -120.10 kcal Atomic # 8 Polarization: -97.15 SS G_CDS: -4.57 Total: -101.72 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Atomic # 16 Polarization: 88.91 SS G_CDS: -0.28 Total: 88.63 kcal Total: -84.30 -2.17 -86.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408357944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.361 kcal (2) G-P(sol) polarization free energy of solvation -84.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds