Wall clock time and date at job start Wed Apr 1 2020 02:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99724 * 2 1 4 4 O 1.20822 * 120.00424 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99527 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46806 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.46846 * 180.02562 * 6 5 3 8 8 C 1.34784 * 119.99401 * 180.02562 * 7 6 5 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 6 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 6 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46826 * 60.00525 * 1 2 3 30 30 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47493 * 299.99716 * 1 2 3 32 32 H 1.08994 * 109.47075 * 60.00236 * 5 3 2 33 33 H 1.08998 * 109.47640 * 299.99936 * 5 3 2 34 34 H 1.09004 * 109.46966 * 60.00345 * 6 5 3 35 35 H 1.08996 * 109.47750 * 300.00672 * 6 5 3 36 36 H 0.96994 * 120.00159 * 0.02562 * 7 6 5 37 37 H 1.07999 * 125.11454 * 359.95838 * 11 10 8 38 38 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 39 39 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 40 40 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 41 41 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 44 44 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 45 45 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.0749 4.0197 -0.0003 9 8 5.4122 5.0400 -0.0009 10 6 7.5421 4.0965 -0.0010 11 6 8.4144 3.0483 -0.0010 12 7 9.6875 3.5116 -0.0022 13 6 10.8843 2.6669 -0.0021 14 6 11.3740 2.4765 1.4348 15 6 12.6056 1.6079 1.4349 16 1 12.9999 1.2299 0.5032 17 6 13.2327 1.3010 2.6239 18 7 12.7528 1.7616 3.7584 19 14 14.7637 0.2308 2.6232 20 1 15.0970 -0.1555 1.2286 21 1 15.8976 0.9886 3.2109 22 1 14.5141 -0.9910 3.4295 23 6 9.6977 4.8912 0.0029 24 6 10.7192 5.8358 -0.0045 25 6 10.4131 7.1790 -0.0050 26 6 9.0920 7.6033 -0.0044 27 6 8.0667 6.6834 -0.0026 28 6 8.3616 5.3222 -0.0010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9564 0.7806 -0.8891 33 1 3.9558 0.7809 0.8908 34 1 3.6100 3.2367 0.8894 35 1 3.6107 3.2357 -0.8905 36 1 5.9914 2.0052 -0.0002 37 1 8.1328 2.0057 0.0001 38 1 11.6664 3.1448 -0.5921 39 1 10.6440 1.6962 -0.4357 40 1 10.5920 1.9985 2.0249 41 1 11.6144 3.4471 1.8685 42 1 13.1938 1.5453 4.5949 43 1 11.7508 5.5164 -0.0050 44 1 11.2092 7.9089 -0.0058 45 1 8.8666 8.6595 -0.0045 46 1 7.0391 7.0160 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443872494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:19 Heat of formation + Delta-G solvation = -95.546661 kcal Electronic energy + Delta-G solvation = -28498.618007 eV Core-core repulsion = 24352.532308 eV Total energy + Delta-G solvation = -4146.085699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47472 -41.56561 -40.22541 -38.12938 -37.71454 -36.19999 -35.81545 -34.06365 -32.46606 -31.83318 -30.25415 -29.87240 -28.57490 -26.96560 -25.36176 -23.94499 -23.70201 -22.87787 -21.95833 -21.65542 -20.71624 -18.84850 -18.74983 -18.37902 -17.77762 -17.67943 -17.34570 -16.67942 -16.56520 -16.52797 -16.40574 -16.13187 -15.71482 -15.26981 -15.00548 -14.87960 -14.48499 -14.42428 -14.29346 -14.20045 -14.00947 -13.61276 -13.44159 -13.21859 -12.90851 -12.80537 -12.77343 -12.56406 -12.55004 -12.33105 -12.02574 -11.90848 -11.81935 -11.67428 -11.63707 -11.36032 -10.99560 -10.62807 -10.55672 -10.14256 -9.19389 -8.61745 -8.23496 -6.36758 0.06342 0.62631 1.07053 1.12448 1.41994 1.43825 1.52934 1.55590 1.85857 2.40091 2.42083 2.45230 3.01955 3.11580 3.50670 3.72346 3.74022 3.87123 3.96665 4.02239 4.15930 4.26302 4.30841 4.31354 4.33418 4.46177 4.47827 4.49727 4.65767 4.72522 4.73070 4.75108 4.78102 4.82912 4.93691 5.14232 5.34011 5.38757 5.40283 5.41083 5.53880 5.65826 5.71937 5.72485 5.85765 6.05594 6.25007 6.31085 6.61200 6.66498 6.80590 7.31854 7.34414 8.87921 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008630 B = 0.002471 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.560173 B =11326.595118 C =14169.118583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.543 6.543 5 C -0.115 4.115 6 C 0.137 3.863 7 N -0.715 5.715 8 C 0.598 3.402 9 O -0.589 6.589 10 C -0.274 4.274 11 C 0.137 3.863 12 N -0.459 5.459 13 C 0.118 3.882 14 C 0.020 3.980 15 C -0.538 4.538 16 H 0.075 0.925 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.255 1.255 21 H -0.285 1.285 22 H -0.280 1.280 23 C 0.066 3.934 24 C -0.131 4.131 25 C -0.106 4.106 26 C -0.138 4.138 27 C -0.093 4.093 28 C -0.088 4.088 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.217 0.783 38 H 0.086 0.914 39 H 0.114 0.886 40 H -0.001 1.001 41 H -0.013 1.013 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 -3.770 -10.462 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.433 6.433 5 C -0.152 4.152 6 C 0.013 3.987 7 N -0.368 5.368 8 C 0.388 3.612 9 O -0.470 6.470 10 C -0.285 4.285 11 C 0.002 3.998 12 N -0.137 5.137 13 C -0.002 4.002 14 C -0.018 4.018 15 C -0.576 4.576 16 H 0.093 0.907 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.791 3.209 20 H -0.179 1.179 21 H -0.211 1.211 22 H -0.206 1.206 23 C -0.038 4.038 24 C -0.151 4.151 25 C -0.125 4.125 26 C -0.157 4.157 27 C -0.112 4.112 28 C -0.092 4.092 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.078 0.922 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.255 0.745 37 H 0.234 0.766 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.018 0.982 41 H 0.005 0.995 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.171 0.829 45 H 0.168 0.832 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.454 -2.991 -10.304 19.643 hybrid contribution 0.676 -0.497 0.688 1.085 sum -15.778 -3.487 -9.616 18.803 Atomic orbital electron populations 1.23545 0.74838 1.05721 1.02447 1.86494 1.24914 1.32549 1.83664 1.23883 0.92627 0.81137 0.71242 1.90722 1.68244 1.37563 1.46791 1.21499 0.86786 0.97224 1.09726 1.20890 0.79582 0.95803 1.02445 1.45460 1.07004 1.08133 1.76214 1.17229 0.85987 0.83265 0.74715 1.90728 1.67141 1.36311 1.52841 1.19850 0.91868 0.92619 1.24119 1.22704 0.81836 1.00218 0.95034 1.44335 1.07237 1.04501 1.57640 1.22159 0.84053 0.94538 0.99417 1.19262 0.95637 0.95492 0.91376 1.21502 1.11262 1.31204 0.93661 0.90708 1.25953 1.00921 0.97453 0.95240 1.70123 1.41995 1.46430 0.98602 0.85381 0.78529 0.78111 0.78910 1.17859 1.21117 1.20608 1.18565 0.95459 0.83831 1.05934 1.20385 0.97426 0.92570 1.04748 1.21134 0.97431 0.94290 0.99674 1.21246 0.92009 1.00260 1.02158 1.20710 0.99882 0.90930 0.99649 1.19083 0.91405 0.93733 1.05014 0.92014 0.84985 0.92181 0.83513 0.83970 0.92628 0.92126 0.74460 0.76629 0.89604 0.86792 0.98241 0.99460 0.92788 0.85929 0.82898 0.83241 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.18 10.57 -51.36 -0.54 -5.72 16 3 C 0.47 7.95 7.96 71.24 0.57 8.52 16 4 O -0.54 -13.60 15.73 21.97 0.35 -13.25 16 5 C -0.12 -1.23 5.93 29.85 0.18 -1.05 16 6 C 0.14 2.67 4.96 86.38 0.43 3.10 16 7 N -0.71 -14.39 5.54 -466.84 -2.59 -16.98 16 8 C 0.60 18.42 7.80 86.51 0.67 19.09 16 9 O -0.59 -22.97 16.16 -4.24 -0.07 -23.04 16 10 C -0.27 -8.73 6.27 -19.01 -0.12 -8.85 16 11 C 0.14 3.74 10.75 83.70 0.90 4.64 16 12 N -0.46 -15.20 2.74 -515.30 -1.41 -16.62 16 13 C 0.12 4.03 5.89 86.38 0.51 4.54 16 14 C 0.02 0.94 5.30 29.85 0.16 1.10 16 15 C -0.54 -27.04 9.11 25.60 0.23 -26.81 16 16 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 17 C 0.00 0.15 5.46 84.66 0.46 0.62 16 18 N -0.93 -53.85 13.29 21.45 0.28 -53.57 16 19 Si 0.97 40.88 29.54 68.60 2.03 42.90 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 21 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 23 C 0.07 2.39 6.79 38.92 0.26 2.65 16 24 C -0.13 -4.38 9.97 22.37 0.22 -4.15 16 25 C -0.11 -3.01 10.01 22.28 0.22 -2.79 16 26 C -0.14 -3.92 10.03 22.28 0.22 -3.70 16 27 C -0.09 -3.16 9.85 22.40 0.22 -2.94 16 28 C -0.09 -3.19 6.27 -20.08 -0.13 -3.31 16 29 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 35 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.42 5.06 7.35 -92.71 -0.68 4.38 16 37 H 0.22 3.53 7.38 -2.91 -0.02 3.51 16 38 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 39 H 0.11 3.20 8.11 -2.39 -0.02 3.18 16 40 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 41 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 42 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 43 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 44 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 45 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 46 H 0.12 4.15 7.45 -2.91 -0.02 4.13 16 Total: -1.00 -79.58 399.62 4.58 -75.01 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.32 Total: 19.14 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 6.22 Total: -7.86 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -3.72 Total: -87.16 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.27 Total: -42.02 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -79.58 4.58 -75.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443872494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.541 kcal (2) G-P(sol) polarization free energy of solvation -79.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds