Wall clock time and date at job start Wed Apr 1 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47020 * 74.74594 * 3 2 1 5 5 C 1.37096 * 119.99662 * 269.99643 * 4 3 2 6 6 H 1.08003 * 119.99929 * 202.67040 * 5 4 3 7 7 C 1.38951 * 120.00104 * 22.67527 * 5 4 3 8 8 N 1.31405 * 120.00018 * 352.43580 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 172.43794 * 7 5 4 10 10 H 1.48500 * 109.47201 * 59.99822 * 9 7 5 11 11 H 1.48499 * 109.47447 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47278 * 299.99796 * 9 7 5 13 13 C 1.34775 * 120.00283 * 90.00221 * 4 3 2 14 14 O 1.21296 * 119.99553 * 5.09612 * 13 4 3 15 15 C 1.50696 * 120.00396 * 185.10424 * 13 4 3 16 16 C 1.52998 * 109.47591 * 174.67554 * 15 13 4 17 17 C 1.52996 * 109.47242 * 179.97438 * 16 15 13 18 18 N 1.46503 * 109.46998 * 179.97438 * 17 16 15 19 19 C 1.34772 * 119.99942 * 180.02562 * 18 17 16 20 20 O 1.21590 * 120.00268 * 0.02562 * 19 18 17 21 21 C 1.47602 * 120.00144 * 180.02562 * 19 18 17 22 22 C 1.39733 * 120.08643 * 0.26825 * 21 19 18 23 23 C 1.37703 * 119.91048 * 180.27282 * 22 21 19 24 24 C 1.39000 * 120.08789 * 359.45863 * 23 22 21 25 25 O 1.35710 * 119.91157 * 180.29476 * 24 23 22 26 26 C 1.42892 * 117.00089 * 180.02562 * 25 24 23 27 27 C 1.38993 * 120.17270 * 0.27163 * 24 23 22 28 28 C 1.37695 * 120.09509 * 0.02562 * 27 24 23 29 29 H 4.40643 * 5.51403 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47380 * 314.74461 * 3 2 1 31 31 H 1.09003 * 109.47272 * 194.74042 * 3 2 1 32 32 H 0.97002 * 120.00578 * 185.02025 * 8 7 5 33 33 H 1.09007 * 109.46957 * 54.67315 * 15 13 4 34 34 H 1.09004 * 109.46936 * 294.67957 * 15 13 4 35 35 H 1.09001 * 109.46713 * 59.99379 * 16 15 13 36 36 H 1.09002 * 109.46876 * 300.00455 * 16 15 13 37 37 H 1.09001 * 109.46766 * 60.00273 * 17 16 15 38 38 H 1.08999 * 109.46946 * 299.99985 * 17 16 15 39 39 H 0.96999 * 119.99745 * 0.02562 * 18 17 16 40 40 H 1.08006 * 120.04652 * 0.03420 * 22 21 19 41 41 H 1.08002 * 119.95391 * 179.73037 * 23 22 21 42 42 H 1.09004 * 109.47318 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.47258 * 300.00072 * 26 25 24 44 44 H 1.09001 * 109.47073 * 59.99984 * 26 25 24 45 45 H 1.08002 * 119.95206 * 180.02562 * 27 24 23 46 46 H 1.07993 * 120.04923 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3625 -1.3326 5 6 3.3636 -1.6779 -1.6436 6 1 4.0427 -1.9333 -2.4437 7 6 2.7220 -2.6826 -0.9297 8 7 2.0138 -2.3821 0.1356 9 14 2.8662 -4.4606 -1.4843 10 1 4.2941 -4.8683 -1.4732 11 1 2.0961 -5.3314 -0.5603 12 1 2.3236 -4.5956 -2.8600 13 6 3.3587 0.5964 -2.2527 14 8 3.2452 1.7655 -1.9501 15 6 3.7502 0.2163 -3.6574 16 6 3.8141 1.4734 -4.5271 17 6 4.2122 1.0874 -5.9530 18 7 4.2728 2.2911 -6.7859 19 6 4.6052 2.1934 -8.0883 20 8 4.8544 1.1061 -8.5722 21 6 4.6668 3.4062 -8.9273 22 6 4.3862 4.6573 -8.3718 23 6 4.4392 5.7857 -9.1592 24 6 4.7823 5.6828 -10.5022 25 8 4.8393 6.7979 -11.2735 26 6 5.1977 6.6203 -12.6453 27 6 5.0675 4.4408 -11.0572 28 6 5.0108 3.3069 -10.2780 29 1 -1.0500 0.0002 -0.0001 30 1 3.0097 -0.7226 0.7298 31 1 3.0089 0.9947 0.2615 32 1 1.6263 -3.0885 0.6757 33 1 3.0107 -0.4718 -4.0671 34 1 4.7275 -0.2665 -3.6441 35 1 4.5536 2.1614 -4.1173 36 1 2.8369 1.9561 -4.5402 37 1 3.4729 0.3992 -6.3629 38 1 5.1895 0.6050 -5.9393 39 1 4.0736 3.1584 -6.3999 40 1 4.1243 4.7387 -7.3271 41 1 4.2183 6.7525 -8.7315 42 1 5.2064 7.5881 -13.1469 43 1 6.1888 6.1708 -12.7066 44 1 4.4718 5.9666 -13.1288 45 1 5.3341 4.3650 -12.1011 46 1 5.2329 2.3423 -10.7099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490976513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:17 Heat of formation + Delta-G solvation = -38.366129 kcal Electronic energy + Delta-G solvation = -28048.371698 eV Core-core repulsion = 23904.765533 eV Total energy + Delta-G solvation = -4143.606165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48081 -40.63282 -40.37866 -38.09700 -37.24404 -36.50924 -33.98373 -33.56544 -33.13919 -32.18451 -31.39572 -29.00434 -28.30371 -27.45345 -26.14037 -24.25854 -23.57081 -22.73036 -21.53520 -20.92277 -19.48104 -19.39118 -18.55581 -18.39635 -17.87175 -17.36399 -16.96420 -16.71155 -16.57189 -16.16063 -16.09245 -16.08800 -15.80637 -15.25437 -15.06412 -14.65784 -14.49304 -14.37811 -14.25757 -13.87619 -13.61902 -13.56411 -13.13871 -13.04351 -12.99479 -12.87886 -12.82842 -12.56175 -12.24645 -12.12651 -12.04838 -11.83541 -11.76424 -11.35269 -11.11398 -11.09303 -10.51529 -10.27733 -10.18421 -10.13033 -9.81160 -9.30057 -8.18401 -5.94589 -0.15778 0.29061 1.45695 1.49738 1.57884 1.80412 1.90598 2.09570 2.18471 2.27200 2.34989 2.45507 2.81038 3.15215 3.22300 3.70898 3.74216 3.80547 3.94148 4.03293 4.09756 4.15540 4.23018 4.29796 4.39959 4.43033 4.52650 4.53041 4.65180 4.73170 4.75435 4.83624 4.95988 4.96240 5.10382 5.17613 5.21451 5.23005 5.29617 5.29927 5.42338 5.44594 5.48600 5.58127 5.84395 6.31568 6.42965 6.50905 7.12035 7.15991 7.16856 7.57290 7.97012 8.74640 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.001764 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.507343 B =15866.614491 C =16913.609284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.132 4.132 3 C 0.237 3.763 4 N -0.455 5.455 5 C -0.354 4.354 6 H 0.115 0.885 7 C -0.004 4.004 8 N -0.886 5.886 9 Si 0.990 3.010 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.270 1.270 13 C 0.451 3.549 14 O -0.633 6.633 15 C -0.109 4.109 16 C -0.096 4.096 17 C 0.128 3.872 18 N -0.714 5.714 19 C 0.558 3.442 20 O -0.585 6.585 21 C -0.193 4.193 22 C -0.040 4.040 23 C -0.165 4.165 24 C 0.149 3.851 25 O -0.326 6.326 26 C 0.014 3.986 27 C -0.216 4.216 28 C -0.029 4.029 29 H 0.233 0.767 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.268 0.732 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.413 0.587 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.121 0.879 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.158 0.842 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 13.709 -21.091 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.134 4.134 3 C 0.115 3.885 4 N -0.173 5.173 5 C -0.481 4.481 6 H 0.132 0.868 7 C -0.206 4.206 8 N -0.524 5.524 9 Si 0.814 3.186 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.195 1.195 13 C 0.242 3.758 14 O -0.522 6.522 15 C -0.149 4.149 16 C -0.135 4.135 17 C 0.004 3.996 18 N -0.366 5.366 19 C 0.347 3.653 20 O -0.467 6.467 21 C -0.196 4.196 22 C -0.058 4.058 23 C -0.184 4.184 24 C 0.102 3.898 25 O -0.239 6.239 26 C -0.080 4.080 27 C -0.234 4.234 28 C -0.048 4.048 29 H 0.249 0.751 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.250 0.750 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.139 0.861 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.175 0.825 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.191 13.578 -21.072 25.599 hybrid contribution -0.356 -1.002 0.327 1.113 sum 4.835 12.575 -20.745 24.736 Atomic orbital electron populations 1.25078 0.96334 1.06669 1.01212 1.23589 0.95175 0.95301 0.99292 1.18147 0.84437 0.98492 0.87431 1.43917 1.56623 1.06955 1.09827 1.20001 1.26402 0.80672 1.21068 0.86775 1.26193 0.94284 1.04191 0.95947 1.70086 1.33205 1.33934 1.15167 0.85022 0.78657 0.76872 0.78016 1.18796 1.21402 1.19510 1.21015 0.81690 0.84822 0.88320 1.90498 1.59926 1.19719 1.82039 1.21239 1.03806 0.99000 0.90833 1.21329 1.02680 0.97272 0.92200 1.21282 1.01929 0.87062 0.89322 1.45849 1.69764 1.11674 1.09334 1.18524 0.75906 0.88794 0.82048 1.90748 1.51832 1.30218 1.73918 1.19808 1.11438 0.93019 0.95362 1.21343 0.93807 0.90072 1.00613 1.20633 1.06091 1.00482 0.91182 1.19511 0.92864 0.85910 0.91483 1.86041 1.83676 1.30264 1.23946 1.23438 1.00997 1.05658 0.77940 1.21408 1.08673 0.91136 1.02228 1.21132 0.92514 0.99199 0.91940 0.75056 0.87400 0.92537 0.92136 0.89232 0.88454 0.90818 0.91592 0.91735 0.91260 0.74957 0.82729 0.82766 0.86067 0.91385 0.91412 0.82483 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.29 19.25 74.32 1.43 -10.86 16 2 C -0.13 -6.59 11.37 31.12 0.35 -6.24 16 3 C 0.24 11.91 5.21 84.57 0.44 12.35 16 4 N -0.46 -22.60 2.58 -645.41 -1.67 -24.27 16 5 C -0.35 -17.15 9.01 84.04 0.76 -16.39 16 6 H 0.11 5.03 6.72 -2.91 -0.02 5.01 16 7 C 0.00 -0.18 5.40 84.93 0.46 0.28 16 8 N -0.89 -45.18 8.37 21.66 0.18 -45.00 16 9 Si 0.99 38.75 29.56 68.60 2.03 40.77 16 10 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 11 H -0.29 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 13 C 0.45 20.88 7.61 87.66 0.67 21.55 16 14 O -0.63 -32.07 15.54 -3.08 -0.05 -32.12 16 15 C -0.11 -3.85 4.25 29.85 0.13 -3.73 16 16 C -0.10 -2.83 4.63 30.59 0.14 -2.69 16 17 C 0.13 3.35 5.67 86.38 0.49 3.84 16 18 N -0.71 -16.59 5.51 -466.20 -2.57 -19.15 16 19 C 0.56 14.89 7.76 86.72 0.67 15.56 16 20 O -0.59 -20.09 16.34 -4.00 -0.07 -20.16 16 21 C -0.19 -4.12 5.88 -20.08 -0.12 -4.23 16 22 C -0.04 -0.64 9.53 22.50 0.21 -0.43 16 23 C -0.17 -2.51 9.97 22.33 0.22 -2.29 16 24 C 0.15 2.35 6.70 22.63 0.15 2.50 16 25 O -0.33 -4.56 10.48 -90.31 -0.95 -5.50 16 26 C 0.01 0.08 9.81 113.37 1.11 1.20 16 27 C -0.22 -3.27 9.01 22.32 0.20 -3.07 16 28 C -0.03 -0.57 9.58 22.50 0.22 -0.35 16 29 H 0.23 8.12 7.80 -4.42 -0.03 8.08 16 30 H 0.11 5.59 6.29 -2.39 -0.02 5.57 16 31 H 0.06 2.80 7.36 -2.39 -0.02 2.78 16 32 H 0.27 13.22 8.32 -92.71 -0.77 12.45 16 33 H 0.09 3.16 8.03 -2.38 -0.02 3.14 16 34 H 0.10 3.16 7.75 -2.38 -0.02 3.14 16 35 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.41 7.33 6.49 -92.71 -0.60 6.72 16 40 H 0.16 1.75 6.40 -2.91 -0.02 1.73 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 44 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 45 H 0.16 1.51 6.28 -2.91 -0.02 1.49 16 46 H 0.13 2.71 7.64 -2.91 -0.02 2.69 16 Total: -1.00 -69.69 393.39 4.86 -64.83 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.41 Total: 33.61 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 7.54 Total: 7.00 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -4.05 Total: -88.42 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -1.06 Total: -57.78 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.77 kcal Total: -69.69 4.86 -64.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490976513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.461 kcal (2) G-P(sol) polarization free energy of solvation -69.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds