Wall clock time and date at job start Wed Apr 1 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99761 * 2 1 4 4 H 1.48502 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47109 * 299.99955 * 3 2 1 6 6 H 1.48496 * 109.46959 * 60.00210 * 3 2 1 7 7 C 1.38816 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99633 * 163.07325 * 7 2 1 9 9 N 1.36938 * 120.00048 * 343.06317 * 7 2 1 10 10 C 1.46920 * 120.62978 * 331.85604 * 9 7 2 11 11 C 1.53194 * 108.77239 * 233.58454 * 10 9 7 12 12 C 1.53044 * 109.31350 * 305.36336 * 11 10 9 13 13 C 1.52997 * 109.46114 * 181.38637 * 12 11 10 14 14 N 1.46499 * 109.47076 * 174.97587 * 13 12 11 15 15 C 1.34776 * 119.99971 * 180.02562 * 14 13 12 16 16 O 1.21595 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.47525 * 120.00222 * 180.02562 * 15 14 13 18 18 C 1.39536 * 120.23999 * 0.02562 * 17 15 14 19 19 C 1.38211 * 120.26412 * 179.97438 * 18 17 15 20 20 C 1.37967 * 120.70520 * 0.02562 * 19 18 17 21 21 C 1.39608 * 120.11148 * 359.97438 * 20 19 18 22 22 N 1.35986 * 133.38764 * 180.31549 * 21 20 19 23 23 C 1.30735 * 109.51449 * 180.02562 * 22 21 20 24 24 O 1.35277 * 125.05953 * 179.89656 * 23 22 21 25 25 N 1.36483 * 109.88485 * 359.62877 * 23 22 21 26 26 H 0.97000 * 126.31835 * 180.21212 * 25 23 22 27 27 C 1.37849 * 107.35284 * 0.22567 * 25 23 22 28 28 C 1.53043 * 109.52326 * 61.37219 * 12 11 10 29 29 C 1.46926 * 120.62603 * 151.82982 * 9 7 2 30 30 H 0.96998 * 119.99900 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.58886 * 113.79903 * 10 9 7 32 32 H 1.09000 * 109.71102 * 353.44153 * 10 9 7 33 33 H 1.09003 * 109.49945 * 185.41975 * 11 10 9 34 34 H 1.08994 * 109.49748 * 65.31627 * 11 10 9 35 35 H 1.09001 * 109.45972 * 301.36219 * 12 11 10 36 36 H 1.08998 * 109.47117 * 54.97383 * 13 12 11 37 37 H 1.09004 * 109.46819 * 294.97687 * 13 12 11 38 38 H 0.96994 * 119.99975 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.86808 * 359.97438 * 18 17 15 40 40 H 1.07993 * 119.64881 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.94572 * 180.02562 * 20 19 18 42 42 H 0.96706 * 113.99625 * 269.69490 * 24 23 22 43 43 H 1.08999 * 109.49801 * 58.58058 * 28 12 11 44 44 H 1.09003 * 109.49915 * 178.67587 * 28 12 11 45 45 H 1.09000 * 109.58467 * 246.20173 * 29 9 7 46 46 H 1.08995 * 109.59085 * 6.48733 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2661 11 6 0.4976 -3.3207 2.4119 12 6 0.8121 -4.7021 1.8329 13 6 1.0499 -5.6916 2.9753 14 7 1.2322 -7.0373 2.4257 15 6 1.4566 -8.0780 3.2521 16 8 1.5081 -7.9000 4.4539 17 6 1.6408 -9.4331 2.6987 18 6 1.5842 -9.6429 1.3204 19 6 1.7572 -10.9121 0.8013 20 6 1.9872 -11.9882 1.6335 21 6 2.0482 -11.8040 3.0160 22 7 2.2598 -12.6466 4.0623 23 6 2.2201 -11.9718 5.1813 24 8 2.3892 -12.5015 6.4145 25 7 1.9885 -10.6525 4.9199 26 1 1.9166 -9.9409 5.5752 27 6 1.8754 -10.5179 3.5527 28 6 2.0676 -4.6177 0.9618 29 6 1.8139 -3.6528 -0.2007 30 1 -0.4850 0.8400 0.0004 31 1 -0.6770 -2.6411 0.7348 32 1 0.0967 -1.3358 1.6678 33 1 -0.3830 -3.3862 3.0510 34 1 1.3474 -2.9696 2.9973 35 1 -0.0280 -5.0417 1.2271 36 1 0.1903 -5.6862 3.6454 37 1 1.9432 -5.4006 3.5279 38 1 1.1915 -7.1793 1.4671 39 1 1.4045 -8.8102 0.6565 40 1 1.7111 -11.0633 -0.2670 41 1 2.1211 -12.9747 1.2147 42 1 1.5682 -12.7967 6.8318 43 1 2.9024 -4.2542 1.5610 44 1 2.3047 -5.6063 0.5686 45 1 1.0403 -4.0599 -0.8516 46 1 2.7333 -3.5126 -0.7691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518394022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:49 Heat of formation + Delta-G solvation = 13.762193 kcal Electronic energy + Delta-G solvation = -29217.234647 eV Core-core repulsion = 25108.181687 eV Total energy + Delta-G solvation = -4109.052960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.60631 -39.98998 -38.45326 -37.82607 -36.80906 -35.09014 -33.55371 -32.95896 -31.11781 -30.42588 -29.73063 -29.31168 -26.96101 -24.59281 -23.70530 -22.78916 -22.50499 -22.18288 -21.12029 -20.68241 -19.34668 -19.13301 -18.16657 -17.99776 -16.92957 -16.72448 -16.15974 -16.00949 -15.47197 -14.99144 -14.87111 -14.59793 -14.42339 -14.14821 -13.97873 -13.63189 -13.53084 -13.20778 -12.99829 -12.49477 -12.42838 -12.38374 -12.11273 -12.05864 -11.91319 -11.39359 -11.11642 -11.02702 -10.76667 -10.66983 -10.55365 -10.31623 -10.24271 -10.14611 -9.92909 -9.61031 -9.49021 -9.19648 -8.80382 -8.56861 -8.50372 -6.70459 -5.82215 -3.24713 0.12811 1.03313 1.84516 2.16981 2.76697 2.99948 3.34305 3.34832 3.43124 3.45138 3.51109 4.13013 4.43065 4.47057 4.48074 4.70664 4.82896 4.93711 5.04388 5.15337 5.25785 5.31083 5.37295 5.48386 5.54790 5.73476 5.78784 5.85074 5.90807 5.96836 5.98024 6.06174 6.26355 6.26957 6.29895 6.36533 6.39325 6.54812 6.62812 6.70477 6.76197 6.92936 7.18592 7.29689 7.30747 7.35885 7.62032 7.77097 7.98838 8.42153 9.18416 9.81810 10.38197 11.26316 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.001960 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.350641 B =14281.031978 C =14870.816905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.714 5.714 15 C 0.559 3.441 16 O -0.555 6.555 17 C -0.127 4.127 18 C -0.059 4.059 19 C -0.133 4.133 20 C -0.035 4.035 21 C 0.046 3.954 22 N -0.484 5.484 23 C 0.452 3.548 24 O -0.441 6.441 25 N -0.584 5.584 26 H 0.435 0.565 27 C 0.111 3.889 28 C -0.128 4.128 29 C 0.145 3.855 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.411 0.589 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 -24.254 6.081 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.110 4.110 13 C 0.000 4.000 14 N -0.364 5.364 15 C 0.346 3.654 16 O -0.435 6.435 17 C -0.133 4.133 18 C -0.079 4.079 19 C -0.153 4.153 20 C -0.055 4.055 21 C -0.073 4.073 22 N -0.216 5.216 23 C 0.147 3.853 24 O -0.243 6.243 25 N -0.208 5.208 26 H 0.277 0.723 27 C -0.003 4.003 28 C -0.167 4.167 29 C 0.019 3.981 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.270 0.730 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.110 -24.771 6.854 25.725 hybrid contribution -0.257 1.879 0.303 1.920 sum 0.854 -22.892 7.157 24.000 Atomic orbital electron populations 1.70036 1.05256 1.25408 1.54048 1.25053 0.95302 0.98441 1.00927 0.86237 0.79387 0.83962 0.77281 1.20261 1.21730 1.21555 1.19222 0.92554 0.84804 1.41530 0.91693 1.44057 1.35897 1.01548 1.50022 1.20760 0.88620 0.98154 0.87895 1.22181 1.00369 0.94574 1.00126 1.21328 0.98854 0.95398 0.95372 1.21649 1.01698 0.79793 0.96863 1.45985 1.71936 1.08081 1.10435 1.18114 0.76634 0.84282 0.86347 1.90697 1.52345 1.85547 1.14926 1.18907 1.10181 0.91303 0.92911 1.21225 0.96092 0.98150 0.92420 1.20884 1.02479 0.91561 1.00378 1.20488 0.96018 1.00012 0.88958 1.18818 1.06307 0.88236 0.93903 1.70742 1.23914 1.30892 0.96017 1.20398 0.98170 0.79819 0.86926 1.84837 1.36275 1.78912 1.24266 1.43527 1.59484 1.10398 1.07391 0.72309 1.18314 1.03011 0.95977 0.82959 1.22085 0.96979 0.98730 0.98893 1.20888 0.97581 0.87022 0.92650 0.93679 0.96424 0.89387 0.93055 0.92371 0.91197 0.91572 0.91378 0.76233 0.84408 0.84092 0.84433 0.72985 0.92118 0.93502 0.96568 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.27 2.99 -172.32 -0.52 -14.78 16 10 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 11 C -0.13 -2.35 5.36 -26.61 -0.14 -2.49 16 12 C -0.09 -1.33 2.19 -90.58 -0.20 -1.53 16 13 C 0.12 1.62 5.06 -4.04 -0.02 1.60 16 14 N -0.71 -8.08 5.22 -61.35 -0.32 -8.40 16 15 C 0.56 7.05 7.76 -12.47 -0.10 6.95 16 16 O -0.56 -8.49 15.27 5.28 0.08 -8.40 16 17 C -0.13 -1.37 5.88 -104.95 -0.62 -1.98 16 18 C -0.06 -0.46 9.53 -39.11 -0.37 -0.84 16 19 C -0.13 -0.90 9.99 -39.69 -0.40 -1.30 16 20 C -0.04 -0.29 10.09 -39.17 -0.40 -0.69 16 21 C 0.05 0.51 7.22 -84.69 -0.61 -0.10 16 22 N -0.48 -5.74 11.32 -12.23 -0.14 -5.88 16 23 C 0.45 4.62 9.40 -88.85 -0.83 3.78 16 24 O -0.44 -3.18 13.63 -17.52 -0.24 -3.42 16 25 N -0.58 -6.21 6.03 -11.71 -0.07 -6.29 16 26 H 0.43 4.39 7.71 -40.82 -0.31 4.07 16 27 C 0.11 1.28 6.88 -83.66 -0.58 0.70 16 28 C -0.13 -1.97 5.25 -26.61 -0.14 -2.11 16 29 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 3.62 5.68 -40.82 -0.23 3.39 16 39 H 0.14 0.76 6.39 -52.49 -0.34 0.42 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.41 0.64 9.06 45.56 0.41 1.05 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.58 7.15 -51.93 -0.37 0.21 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -34.23 374.91 -9.98 -44.21 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.34 Total: 4.30 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -4.67 Total: 1.75 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.42 Total: -60.47 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.16 Total: -11.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.23 -9.98 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518394022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.975 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds