Wall clock time and date at job start Wed Apr 1 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99761 * 2 1 4 4 H 1.48502 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47109 * 299.99955 * 3 2 1 6 6 H 1.48496 * 109.46959 * 60.00210 * 3 2 1 7 7 C 1.38816 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99633 * 163.07325 * 7 2 1 9 9 N 1.36938 * 120.00048 * 343.06317 * 7 2 1 10 10 C 1.46920 * 120.62978 * 331.85604 * 9 7 2 11 11 C 1.53194 * 108.77239 * 233.58454 * 10 9 7 12 12 C 1.53044 * 109.31350 * 305.36336 * 11 10 9 13 13 C 1.52997 * 109.46114 * 181.38637 * 12 11 10 14 14 N 1.46499 * 109.47076 * 174.97587 * 13 12 11 15 15 C 1.34776 * 119.99971 * 180.02562 * 14 13 12 16 16 O 1.21595 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.47525 * 120.00222 * 180.02562 * 15 14 13 18 18 C 1.39536 * 120.23999 * 0.02562 * 17 15 14 19 19 C 1.38211 * 120.26412 * 179.97438 * 18 17 15 20 20 C 1.37967 * 120.70520 * 0.02562 * 19 18 17 21 21 C 1.39608 * 120.11148 * 359.97438 * 20 19 18 22 22 N 1.35986 * 133.38764 * 180.31549 * 21 20 19 23 23 C 1.30735 * 109.51449 * 180.02562 * 22 21 20 24 24 O 1.35277 * 125.05953 * 179.89656 * 23 22 21 25 25 N 1.36483 * 109.88485 * 359.62877 * 23 22 21 26 26 H 0.97000 * 126.31835 * 180.21212 * 25 23 22 27 27 C 1.37849 * 107.35284 * 0.22567 * 25 23 22 28 28 C 1.53043 * 109.52326 * 61.37219 * 12 11 10 29 29 C 1.46926 * 120.62603 * 151.82982 * 9 7 2 30 30 H 0.96998 * 119.99900 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.58886 * 113.79903 * 10 9 7 32 32 H 1.09000 * 109.71102 * 353.44153 * 10 9 7 33 33 H 1.09003 * 109.49945 * 185.41975 * 11 10 9 34 34 H 1.08994 * 109.49748 * 65.31627 * 11 10 9 35 35 H 1.09001 * 109.45972 * 301.36219 * 12 11 10 36 36 H 1.08998 * 109.47117 * 54.97383 * 13 12 11 37 37 H 1.09004 * 109.46819 * 294.97687 * 13 12 11 38 38 H 0.96994 * 119.99975 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.86808 * 359.97438 * 18 17 15 40 40 H 1.07993 * 119.64881 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.94572 * 180.02562 * 20 19 18 42 42 H 0.96706 * 113.99625 * 269.69490 * 24 23 22 43 43 H 1.08999 * 109.49801 * 58.58058 * 28 12 11 44 44 H 1.09003 * 109.49915 * 178.67587 * 28 12 11 45 45 H 1.09000 * 109.58467 * 246.20173 * 29 9 7 46 46 H 1.08995 * 109.59085 * 6.48733 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2661 11 6 0.4976 -3.3207 2.4119 12 6 0.8121 -4.7021 1.8329 13 6 1.0499 -5.6916 2.9753 14 7 1.2322 -7.0373 2.4257 15 6 1.4566 -8.0780 3.2521 16 8 1.5081 -7.9000 4.4539 17 6 1.6408 -9.4331 2.6987 18 6 1.5842 -9.6429 1.3204 19 6 1.7572 -10.9121 0.8013 20 6 1.9872 -11.9882 1.6335 21 6 2.0482 -11.8040 3.0160 22 7 2.2598 -12.6466 4.0623 23 6 2.2201 -11.9718 5.1813 24 8 2.3892 -12.5015 6.4145 25 7 1.9885 -10.6525 4.9199 26 1 1.9166 -9.9409 5.5752 27 6 1.8754 -10.5179 3.5527 28 6 2.0676 -4.6177 0.9618 29 6 1.8139 -3.6528 -0.2007 30 1 -0.4850 0.8400 0.0004 31 1 -0.6770 -2.6411 0.7348 32 1 0.0967 -1.3358 1.6678 33 1 -0.3830 -3.3862 3.0510 34 1 1.3474 -2.9696 2.9973 35 1 -0.0280 -5.0417 1.2271 36 1 0.1903 -5.6862 3.6454 37 1 1.9432 -5.4006 3.5279 38 1 1.1915 -7.1793 1.4671 39 1 1.4045 -8.8102 0.6565 40 1 1.7111 -11.0633 -0.2670 41 1 2.1211 -12.9747 1.2147 42 1 1.5682 -12.7967 6.8318 43 1 2.9024 -4.2542 1.5610 44 1 2.3047 -5.6063 0.5686 45 1 1.0403 -4.0599 -0.8516 46 1 2.7333 -3.5126 -0.7691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518394022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:48 Heat of formation + Delta-G solvation = -13.298564 kcal Electronic energy + Delta-G solvation = -29218.408090 eV Core-core repulsion = 25108.181687 eV Total energy + Delta-G solvation = -4110.226403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.31612 -40.93975 -39.42507 -38.93980 -37.44093 -36.44221 -34.54924 -34.24892 -32.63279 -31.54301 -31.12576 -29.99951 -28.39824 -26.02164 -24.75388 -23.81162 -23.52321 -23.15612 -22.52525 -21.61255 -20.69569 -19.93882 -19.02443 -18.69293 -18.56377 -17.59943 -17.06465 -16.90012 -16.74315 -16.39204 -15.69970 -15.67536 -15.30501 -15.28962 -15.22187 -14.95026 -14.90110 -14.67597 -14.01425 -13.87771 -13.54311 -13.44357 -13.09381 -13.00455 -12.82264 -12.68479 -12.64593 -12.58466 -12.23130 -11.99023 -11.87927 -11.82864 -11.61492 -11.49597 -11.24476 -11.09868 -10.92829 -10.53099 -10.19260 -9.47934 -9.26998 -8.65165 -7.86644 -5.31072 -0.54754 0.36530 1.16630 1.45119 1.45858 1.47891 1.57523 1.94433 2.07678 2.51607 2.71041 2.80931 3.27900 3.42128 3.71117 3.73085 3.84487 3.91798 3.97218 4.08557 4.09233 4.16702 4.34324 4.52693 4.56045 4.69627 4.71163 4.73638 4.80194 4.88813 4.95342 5.04454 5.12901 5.15214 5.29389 5.30770 5.31475 5.35243 5.37667 5.45356 5.57348 5.67705 5.73702 5.80986 5.82527 6.41277 6.46199 6.57104 6.60576 7.09958 7.17201 7.90079 8.39907 9.19421 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.001960 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.350641 B =14281.031978 C =14870.816905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.177 3.823 11 C -0.122 4.122 12 C -0.078 4.078 13 C 0.137 3.863 14 N -0.703 5.703 15 C 0.558 3.442 16 O -0.589 6.589 17 C -0.149 4.149 18 C -0.046 4.046 19 C -0.121 4.121 20 C -0.036 4.036 21 C 0.022 3.978 22 N -0.511 5.511 23 C 0.451 3.549 24 O -0.444 6.444 25 N -0.587 5.587 26 H 0.433 0.567 27 C 0.088 3.912 28 C -0.115 4.115 29 C 0.139 3.861 30 H 0.249 0.751 31 H 0.000 1.000 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.415 0.585 39 H 0.167 0.833 40 H 0.180 0.820 41 H 0.157 0.843 42 H 0.434 0.566 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.022 0.978 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -26.127 4.954 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.337 5.337 10 C 0.051 3.949 11 C -0.162 4.162 12 C -0.097 4.097 13 C 0.013 3.987 14 N -0.355 5.355 15 C 0.347 3.653 16 O -0.471 6.471 17 C -0.155 4.155 18 C -0.065 4.065 19 C -0.141 4.141 20 C -0.055 4.055 21 C -0.096 4.096 22 N -0.243 5.243 23 C 0.147 3.853 24 O -0.249 6.249 25 N -0.211 5.211 26 H 0.275 0.725 27 C -0.025 4.025 28 C -0.154 4.154 29 C 0.014 3.986 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.184 0.816 40 H 0.197 0.803 41 H 0.174 0.826 42 H 0.297 0.703 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.040 0.960 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.685 -26.687 5.711 27.344 hybrid contribution -0.439 2.376 0.607 2.491 sum 1.246 -24.312 6.318 25.150 Atomic orbital electron populations 1.70176 1.06540 1.25657 1.55693 1.25760 0.96045 1.01373 1.01590 0.85278 0.78664 0.80225 0.76727 1.19223 1.21929 1.21856 1.19522 0.92746 0.86190 1.40416 0.91800 1.44344 1.35960 1.02512 1.50836 1.20561 0.87883 0.97444 0.88993 1.21978 1.00820 0.95156 0.98255 1.21156 0.98954 0.93860 0.95720 1.21313 1.01187 0.80301 0.95887 1.45779 1.71635 1.06996 1.11062 1.18417 0.75870 0.85067 0.85958 1.90679 1.53894 1.86106 1.16468 1.18895 1.12532 0.89965 0.94125 1.21637 0.93855 0.99658 0.91387 1.21317 1.00429 0.90400 1.01988 1.20899 0.95019 1.01628 0.88001 1.19249 1.07330 0.88048 0.94976 1.70707 1.25173 1.31679 0.96762 1.20506 0.97537 0.79785 0.87501 1.84798 1.38152 1.78715 1.23232 1.43564 1.59662 1.10475 1.07439 0.72456 1.18623 1.03931 0.96612 0.83318 1.21945 0.96726 0.99554 0.97173 1.21089 0.97376 0.85867 0.94271 0.94193 0.98191 0.93248 0.91309 0.93288 0.90052 0.91698 0.92473 0.74624 0.81570 0.80298 0.82556 0.70313 0.93315 0.89354 0.96041 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 11.19 21.65 0.24 -54.44 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 3 Si 0.96 44.64 29.59 68.60 2.03 46.67 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.26 -13.97 9.58 84.03 0.81 -13.17 16 8 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 9 N -0.61 -29.56 2.99 -699.11 -2.09 -31.65 16 10 C 0.18 8.18 5.30 86.36 0.46 8.64 16 11 C -0.12 -4.25 5.36 30.67 0.16 -4.08 16 12 C -0.08 -2.11 2.19 -10.77 -0.02 -2.13 16 13 C 0.14 3.30 5.06 86.38 0.44 3.74 16 14 N -0.70 -13.86 5.22 -466.28 -2.43 -16.30 16 15 C 0.56 13.15 7.76 86.69 0.67 13.82 16 16 O -0.59 -17.73 15.27 -4.02 -0.06 -17.79 16 17 C -0.15 -2.93 5.88 -20.08 -0.12 -3.04 16 18 C -0.05 -0.55 9.53 22.58 0.22 -0.33 16 19 C -0.12 -1.14 9.99 22.20 0.22 -0.92 16 20 C -0.04 -0.51 10.09 22.54 0.23 -0.28 16 21 C 0.02 0.46 7.22 39.36 0.28 0.75 16 22 N -0.51 -11.95 11.32 -306.46 -3.47 -15.42 16 23 C 0.45 9.21 9.40 179.73 1.69 10.90 16 24 O -0.44 -6.22 13.63 -85.62 -1.17 -7.39 16 25 N -0.59 -12.59 6.03 -301.79 -1.82 -14.41 16 26 H 0.43 9.03 7.71 -92.71 -0.71 8.32 16 27 C 0.09 1.97 6.88 39.17 0.27 2.24 16 28 C -0.12 -3.24 5.25 30.67 0.16 -3.07 16 29 C 0.14 5.21 6.52 86.36 0.56 5.77 16 30 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 32 H 0.05 2.65 6.07 -2.39 -0.01 2.64 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 5.69 5.68 -92.71 -0.53 5.16 16 39 H 0.17 0.95 6.39 -2.91 -0.02 0.93 16 40 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.43 1.06 9.06 -74.05 -0.67 0.39 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.78 7.15 -2.39 -0.02 1.77 16 45 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 Total: -1.00 -77.06 374.91 -3.18 -80.24 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.86 Total: 14.15 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.44 Total: 16.34 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -9.57 Total: -132.22 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.23 Total: -25.18 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -77.06 -3.18 -80.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518394022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.941 kcal (2) G-P(sol) polarization free energy of solvation -77.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds