Wall clock time and date at job start Wed Apr 1 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35910 * 116.99897 * 2 1 4 4 C 1.38754 * 120.04924 * 180.25642 * 3 2 1 5 5 C 1.38119 * 119.93858 * 180.25379 * 4 3 2 6 6 C 1.50702 * 119.97229 * 179.74541 * 5 4 3 7 7 N 1.46899 * 109.47342 * 269.72118 * 6 5 4 8 8 C 1.46895 * 110.99989 * 190.00093 * 7 6 5 9 9 C 1.53241 * 109.33538 * 187.25118 * 8 7 6 10 10 N 1.47082 * 108.52509 * 306.16899 * 9 8 7 11 11 C 1.36935 * 120.87800 * 231.18634 * 10 9 8 12 12 H 1.07994 * 120.00243 * 27.12925 * 11 10 9 13 13 C 1.38815 * 119.99552 * 206.84012 * 11 10 9 14 14 N 1.31614 * 119.99986 * 17.18837 * 13 11 10 15 15 Si 1.86797 * 120.00057 * 197.17547 * 13 11 10 16 16 H 1.48508 * 109.47149 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47196 * 120.00464 * 15 13 11 18 18 H 1.48497 * 109.47565 * 240.00842 * 15 13 11 19 19 C 1.47072 * 118.23374 * 51.45730 * 10 9 8 20 20 C 1.46908 * 110.99894 * 314.30181 * 7 6 5 21 21 C 1.38292 * 120.05901 * 359.46330 * 5 4 3 22 22 C 1.38251 * 120.10868 * 0.28445 * 21 5 4 23 23 C 1.50693 * 119.97073 * 179.97438 * 22 21 5 24 24 F 1.39903 * 109.46774 * 89.99999 * 23 22 21 25 25 F 1.39899 * 109.47390 * 209.99637 * 23 22 21 26 26 F 1.39898 * 109.47397 * 329.99911 * 23 22 21 27 27 C 1.38166 * 120.05517 * 359.97438 * 22 21 5 28 28 H 1.08994 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47204 * 300.00593 * 1 2 3 30 30 H 1.09001 * 109.46881 * 59.99547 * 1 2 3 31 31 H 1.07999 * 120.03466 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.46889 * 149.71813 * 6 5 4 33 33 H 1.08999 * 109.46899 * 29.72041 * 6 5 4 34 34 H 1.08994 * 109.49506 * 67.29451 * 8 7 6 35 35 H 1.08997 * 109.49438 * 307.21030 * 8 7 6 36 36 H 1.09003 * 109.62622 * 186.45689 * 9 8 7 37 37 H 1.09001 * 109.79122 * 65.97420 * 9 8 7 38 38 H 0.97002 * 120.00194 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.62781 * 68.25550 * 19 10 9 40 40 H 1.09007 * 109.62956 * 188.83247 * 19 10 9 41 41 H 1.09005 * 109.49135 * 292.70628 * 20 7 6 42 42 H 1.09006 * 109.49151 * 52.78388 * 20 7 6 43 43 H 1.07994 * 119.94982 * 180.25271 * 21 5 4 44 44 H 1.07999 * 120.02743 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4316 1.2848 -0.0054 5 6 4.0562 2.5167 -0.0001 6 6 5.5611 2.5977 -0.0001 7 7 6.0501 2.6246 1.3849 8 6 7.4840 2.9404 1.4308 9 6 7.9927 2.7814 2.8675 10 7 7.1480 3.5949 3.7551 11 6 7.7054 4.4800 4.6389 12 1 8.6684 4.9206 4.4270 13 6 7.0299 4.8156 5.8042 14 7 6.0424 4.0588 6.2335 15 14 7.5227 6.3409 6.7633 16 1 8.6530 7.0148 6.0749 17 1 6.3673 7.2703 6.8430 18 1 7.9396 5.9507 8.1341 19 6 5.6891 3.4281 3.6725 20 6 5.2707 3.5660 2.2001 21 6 3.3020 3.6758 -0.0006 22 6 1.9213 3.6048 -0.0005 23 6 1.1025 4.8699 -0.0005 24 9 0.8491 5.2613 -1.3196 25 9 -0.1098 4.6408 0.6589 26 9 1.8080 5.8821 0.6589 27 6 1.2916 2.3750 -0.0004 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.0211 0.3799 -0.0091 32 1 5.8760 3.5058 -0.5144 33 1 5.9717 1.7283 -0.5136 34 1 7.6410 3.9673 1.1009 35 1 8.0274 2.2601 0.7751 36 1 9.0257 3.1236 2.9301 37 1 7.9352 1.7345 3.1657 38 1 5.5701 4.2935 7.0477 39 1 5.4117 2.4418 4.0444 40 1 5.1982 4.1982 4.2677 41 1 5.4586 4.5842 1.8595 42 1 4.2090 3.3393 2.1022 43 1 3.7923 4.6380 -0.0006 44 1 0.2130 2.3201 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529529175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:59 Heat of formation + Delta-G solvation = -122.874413 kcal Electronic energy + Delta-G solvation = -31136.265187 eV Core-core repulsion = 26447.137728 eV Total energy + Delta-G solvation = -4689.127460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.26556 -47.77474 -47.72848 -40.58291 -38.68088 -37.35080 -34.61985 -32.53721 -31.38458 -30.35110 -29.85822 -27.90914 -27.23336 -26.07337 -24.72673 -22.75073 -22.46866 -22.24790 -20.98930 -19.12521 -18.63140 -18.60178 -18.38027 -16.89793 -16.79422 -16.40943 -16.24796 -16.00985 -15.29529 -14.66718 -14.63172 -14.52542 -14.45632 -14.26646 -14.16082 -13.89858 -13.87477 -13.78143 -13.47761 -13.17464 -13.02038 -12.88981 -12.79059 -12.74315 -12.20670 -11.87126 -11.60428 -11.54259 -11.23687 -11.16593 -11.03879 -10.73987 -10.45748 -10.30419 -10.05275 -9.76147 -9.60022 -9.22257 -8.50683 -8.48076 -7.83327 -6.65096 -5.76341 -3.17708 0.75305 1.08522 2.51335 2.96967 3.25729 3.38663 3.46490 3.48417 3.55971 3.89956 4.28894 4.45280 4.50997 4.54918 4.68999 4.82797 4.88019 4.91407 5.05471 5.15139 5.21338 5.26201 5.41130 5.45199 5.63112 5.67229 5.87499 5.89704 5.92464 5.95635 6.13658 6.23120 6.28098 6.34110 6.38705 6.54329 6.70415 6.93402 7.07306 7.25110 7.53475 7.65004 7.71039 7.83189 8.45295 9.22946 9.86491 10.44955 11.32366 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.003421 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.005754 B = 8181.935125 C = 9189.669341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.128 3.872 4 C -0.097 4.097 5 C -0.033 4.033 6 C 0.089 3.911 7 N -0.526 5.526 8 C 0.044 3.956 9 C 0.149 3.851 10 N -0.596 5.596 11 C -0.252 4.252 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.902 5.902 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.290 1.290 19 C 0.180 3.820 20 C 0.030 3.970 21 C -0.097 4.097 22 C -0.145 4.145 23 C 0.509 3.491 24 F -0.179 7.179 25 F -0.178 7.178 26 F -0.171 7.171 27 C -0.168 4.168 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.143 0.857 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.026 0.974 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.064 0.936 43 H 0.136 0.864 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 -5.041 -17.184 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.082 3.918 4 C -0.116 4.116 5 C -0.034 4.034 6 C -0.038 4.038 7 N -0.251 5.251 8 C -0.085 4.085 9 C 0.022 3.978 10 N -0.319 5.319 11 C -0.382 4.382 12 H 0.084 0.916 13 C -0.196 4.196 14 N -0.547 5.547 15 Si 0.730 3.270 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.217 1.217 19 C 0.054 3.946 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.146 4.146 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.160 7.160 26 F -0.153 7.153 27 C -0.187 4.187 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.153 0.847 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.459 -5.628 -16.815 21.112 hybrid contribution -0.253 1.977 0.275 2.012 sum -11.712 -3.651 -16.540 20.593 Atomic orbital electron populations 1.23117 0.78167 1.04244 1.01551 1.86115 1.21534 1.26094 1.88652 1.18785 0.92156 0.83910 0.96927 1.20521 0.91040 0.98774 1.01297 1.19570 0.96112 0.91432 0.96285 1.21162 0.88885 1.01493 0.92301 1.62188 1.03794 1.51905 1.07185 1.22653 0.87479 0.98157 1.00188 1.20966 0.94114 0.94810 0.87909 1.44157 1.00978 1.44570 1.42187 1.19226 1.04403 1.16581 0.97961 0.91618 1.25018 0.99370 0.99055 0.96203 1.70036 1.25095 1.36670 1.22895 0.86252 0.77855 0.83150 0.79700 1.20305 1.21573 1.21707 1.20941 0.84232 1.00485 0.88979 1.23128 0.96568 0.92381 0.97832 1.20825 0.91520 0.99693 0.99504 1.19590 0.94403 0.91687 1.08949 1.18279 0.78020 0.84489 0.73732 1.93215 1.94466 1.92134 1.36172 1.93181 1.46990 1.94600 1.81183 1.93234 1.78315 1.62710 1.80997 1.20865 1.00532 0.90996 1.06282 0.87939 0.92317 0.92600 0.83921 0.93926 0.89732 0.95227 0.91839 0.92571 0.95629 0.93672 0.95591 0.89415 0.95629 0.91759 0.84663 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.41 10.50 -19.46 -0.20 -3.61 16 3 C 0.13 1.52 6.69 -39.22 -0.26 1.26 16 4 C -0.10 -1.21 9.64 -39.43 -0.38 -1.59 16 5 C -0.03 -0.44 4.12 -104.64 -0.43 -0.87 16 6 C 0.09 1.18 5.42 -4.98 -0.03 1.16 16 7 N -0.53 -9.03 4.77 -235.46 -1.12 -10.16 16 8 C 0.04 0.77 5.58 -3.70 -0.02 0.75 16 9 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 10 N -0.60 -15.15 3.03 -171.74 -0.52 -15.67 16 11 C -0.25 -6.98 9.63 -15.06 -0.15 -7.13 16 12 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 13 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 14 N -0.90 -26.50 11.16 55.49 0.62 -25.88 16 15 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 C 0.18 4.40 5.45 -3.37 -0.02 4.38 16 20 C 0.03 0.58 4.79 -3.46 -0.02 0.57 16 21 C -0.10 -1.26 7.11 -39.56 -0.28 -1.54 16 22 C -0.14 -1.82 5.45 -104.65 -0.57 -2.39 16 23 C 0.51 6.34 3.36 36.00 0.12 6.46 16 24 F -0.18 -2.15 17.30 2.25 0.04 -2.11 16 25 F -0.18 -2.19 16.46 2.25 0.04 -2.15 16 26 F -0.17 -2.37 16.46 2.25 0.04 -2.33 16 27 C -0.17 -1.92 8.39 -39.43 -0.33 -2.25 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.04 0.54 8.02 -51.93 -0.42 0.13 16 33 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.20 5.54 -51.93 -0.29 0.91 16 43 H 0.14 1.75 7.60 -52.49 -0.40 1.35 16 44 H 0.14 1.30 5.84 -52.49 -0.31 0.99 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -30.81 365.22 -7.99 -38.79 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.86 Total: -2.28 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.48 Total: 3.05 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -1.02 Total: -51.71 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.20 Total: -3.61 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.11 Total: -6.59 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.81 -7.99 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529529175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.082 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds