Wall clock time and date at job start Wed Apr 1 2020 02:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35910 * 116.99897 * 2 1 4 4 C 1.38754 * 120.04924 * 180.25642 * 3 2 1 5 5 C 1.38119 * 119.93858 * 180.25379 * 4 3 2 6 6 C 1.50702 * 119.97229 * 179.74541 * 5 4 3 7 7 N 1.46899 * 109.47342 * 269.72118 * 6 5 4 8 8 C 1.46895 * 110.99989 * 190.00093 * 7 6 5 9 9 C 1.53241 * 109.33538 * 187.25118 * 8 7 6 10 10 N 1.47082 * 108.52509 * 306.16899 * 9 8 7 11 11 C 1.36935 * 120.87800 * 231.18634 * 10 9 8 12 12 H 1.07994 * 120.00243 * 27.12925 * 11 10 9 13 13 C 1.38815 * 119.99552 * 206.84012 * 11 10 9 14 14 N 1.31614 * 119.99986 * 17.18837 * 13 11 10 15 15 Si 1.86797 * 120.00057 * 197.17547 * 13 11 10 16 16 H 1.48508 * 109.47149 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47196 * 120.00464 * 15 13 11 18 18 H 1.48497 * 109.47565 * 240.00842 * 15 13 11 19 19 C 1.47072 * 118.23374 * 51.45730 * 10 9 8 20 20 C 1.46908 * 110.99894 * 314.30181 * 7 6 5 21 21 C 1.38292 * 120.05901 * 359.46330 * 5 4 3 22 22 C 1.38251 * 120.10868 * 0.28445 * 21 5 4 23 23 C 1.50693 * 119.97073 * 179.97438 * 22 21 5 24 24 F 1.39903 * 109.46774 * 89.99999 * 23 22 21 25 25 F 1.39899 * 109.47390 * 209.99637 * 23 22 21 26 26 F 1.39898 * 109.47397 * 329.99911 * 23 22 21 27 27 C 1.38166 * 120.05517 * 359.97438 * 22 21 5 28 28 H 1.08994 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47204 * 300.00593 * 1 2 3 30 30 H 1.09001 * 109.46881 * 59.99547 * 1 2 3 31 31 H 1.07999 * 120.03466 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.46889 * 149.71813 * 6 5 4 33 33 H 1.08999 * 109.46899 * 29.72041 * 6 5 4 34 34 H 1.08994 * 109.49506 * 67.29451 * 8 7 6 35 35 H 1.08997 * 109.49438 * 307.21030 * 8 7 6 36 36 H 1.09003 * 109.62622 * 186.45689 * 9 8 7 37 37 H 1.09001 * 109.79122 * 65.97420 * 9 8 7 38 38 H 0.97002 * 120.00194 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.62781 * 68.25550 * 19 10 9 40 40 H 1.09007 * 109.62956 * 188.83247 * 19 10 9 41 41 H 1.09005 * 109.49135 * 292.70628 * 20 7 6 42 42 H 1.09006 * 109.49151 * 52.78388 * 20 7 6 43 43 H 1.07994 * 119.94982 * 180.25271 * 21 5 4 44 44 H 1.07999 * 120.02743 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4316 1.2848 -0.0054 5 6 4.0562 2.5167 -0.0001 6 6 5.5611 2.5977 -0.0001 7 7 6.0501 2.6246 1.3849 8 6 7.4840 2.9404 1.4308 9 6 7.9927 2.7814 2.8675 10 7 7.1480 3.5949 3.7551 11 6 7.7054 4.4800 4.6389 12 1 8.6684 4.9206 4.4270 13 6 7.0299 4.8156 5.8042 14 7 6.0424 4.0588 6.2335 15 14 7.5227 6.3409 6.7633 16 1 8.6530 7.0148 6.0749 17 1 6.3673 7.2703 6.8430 18 1 7.9396 5.9507 8.1341 19 6 5.6891 3.4281 3.6725 20 6 5.2707 3.5660 2.2001 21 6 3.3020 3.6758 -0.0006 22 6 1.9213 3.6048 -0.0005 23 6 1.1025 4.8699 -0.0005 24 9 0.8491 5.2613 -1.3196 25 9 -0.1098 4.6408 0.6589 26 9 1.8080 5.8821 0.6589 27 6 1.2916 2.3750 -0.0004 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.0211 0.3799 -0.0091 32 1 5.8760 3.5058 -0.5144 33 1 5.9717 1.7283 -0.5136 34 1 7.6410 3.9673 1.1009 35 1 8.0274 2.2601 0.7751 36 1 9.0257 3.1236 2.9301 37 1 7.9352 1.7345 3.1657 38 1 5.5701 4.2935 7.0477 39 1 5.4117 2.4418 4.0444 40 1 5.1982 4.1982 4.2677 41 1 5.4586 4.5842 1.8595 42 1 4.2090 3.3393 2.1022 43 1 3.7923 4.6380 -0.0006 44 1 0.2130 2.3201 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529529175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:58 Heat of formation + Delta-G solvation = -141.318923 kcal Electronic energy + Delta-G solvation = -31137.065001 eV Core-core repulsion = 26447.137728 eV Total energy + Delta-G solvation = -4689.927274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.26329 -48.78046 -48.72453 -41.49664 -39.88617 -38.54484 -36.25242 -33.92339 -32.79596 -31.74458 -31.38253 -28.93193 -28.42480 -27.06691 -26.26453 -24.31990 -24.13066 -23.21259 -22.05000 -20.80436 -19.63397 -19.58851 -19.36896 -18.68510 -17.76588 -17.31369 -17.20992 -17.07006 -16.71215 -16.26017 -15.88669 -15.62212 -15.56765 -15.45106 -15.31006 -15.16790 -14.98653 -14.91714 -14.88636 -14.88009 -14.44631 -14.10387 -13.75767 -13.70903 -13.27112 -13.08388 -13.00307 -12.83335 -12.64007 -12.60833 -12.31730 -12.14726 -12.06074 -12.03345 -11.84605 -11.56620 -11.40248 -10.59579 -10.20723 -9.42728 -9.20117 -8.67729 -7.87583 -5.32303 -0.19151 0.14128 1.45174 1.47063 1.53420 1.57470 2.20964 2.30915 2.50620 2.58983 2.91579 3.13666 3.28613 3.33591 3.57525 3.69968 3.83624 3.93286 4.10342 4.18179 4.22684 4.31641 4.37213 4.38110 4.41516 4.55282 4.59961 4.69115 4.71784 4.75804 4.82321 4.91562 4.96441 5.03266 5.06116 5.21175 5.34910 5.38541 5.44320 5.61735 5.67466 6.15894 6.23765 6.27386 6.37699 7.13244 7.84554 8.38594 9.19250 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.003421 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.005754 B = 8181.935125 C = 9189.669341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.125 3.875 4 C -0.102 4.102 5 C -0.043 4.043 6 C 0.093 3.907 7 N -0.535 5.535 8 C 0.055 3.945 9 C 0.143 3.857 10 N -0.615 5.615 11 C -0.263 4.263 12 H 0.069 0.931 13 C -0.051 4.051 14 N -0.936 5.936 15 Si 0.966 3.034 16 H -0.265 1.265 17 H -0.291 1.291 18 H -0.291 1.291 19 C 0.188 3.812 20 C 0.053 3.947 21 C -0.108 4.108 22 C -0.152 4.152 23 C 0.512 3.488 24 F -0.176 7.176 25 F -0.177 7.177 26 F -0.182 7.182 27 C -0.165 4.165 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.027 0.973 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.249 0.751 39 H -0.005 1.005 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 -5.425 -19.059 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.079 3.921 4 C -0.121 4.121 5 C -0.043 4.043 6 C -0.033 4.033 7 N -0.260 5.260 8 C -0.074 4.074 9 C 0.017 3.983 10 N -0.339 5.339 11 C -0.393 4.393 12 H 0.087 0.913 13 C -0.246 4.246 14 N -0.583 5.583 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.218 1.218 18 H -0.218 1.218 19 C 0.062 3.938 20 C -0.076 4.076 21 C -0.127 4.127 22 C -0.154 4.154 23 C 0.458 3.542 24 F -0.157 7.157 25 F -0.158 7.158 26 F -0.163 7.163 27 C -0.184 4.184 28 H 0.142 0.858 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.170 0.830 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.058 0.942 39 H 0.013 0.987 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.520 -6.024 -18.731 22.800 hybrid contribution -0.286 1.985 0.814 2.164 sum -11.806 -4.039 -17.917 21.834 Atomic orbital electron populations 1.23433 0.76204 1.06070 1.02350 1.86108 1.23596 1.25562 1.88397 1.18876 0.92250 0.84451 0.96480 1.20690 0.91590 0.98893 1.00946 1.19556 0.96000 0.91623 0.97151 1.21229 0.89120 1.03230 0.89733 1.62087 1.03544 1.50773 1.09588 1.22506 0.87824 0.99164 0.97856 1.21155 0.94125 0.93511 0.89504 1.44441 1.01706 1.45168 1.42562 1.19581 1.04490 1.16920 0.98275 0.91312 1.25782 0.99722 1.01742 0.97401 1.70198 1.26445 1.38329 1.23297 0.85231 0.77624 0.79644 0.78115 1.18948 1.21823 1.21820 1.20664 0.84027 0.97354 0.91800 1.22684 0.97293 0.92728 0.94920 1.20878 0.91915 0.99749 1.00129 1.19649 0.94335 0.92014 1.09396 1.18268 0.77966 0.84286 0.73712 1.93219 1.94439 1.92121 1.35905 1.93180 1.46895 1.94563 1.81201 1.93213 1.78604 1.63213 1.81264 1.21082 1.01594 0.90445 1.05250 0.85763 0.92051 0.91204 0.83009 0.92855 0.87062 0.95445 0.87890 0.91970 0.96546 0.94155 0.98674 0.92979 0.96272 0.90929 0.84968 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.44 10.50 -92.53 -0.97 -7.42 16 3 C 0.13 2.77 6.69 22.51 0.15 2.92 16 4 C -0.10 -2.35 9.64 22.36 0.22 -2.13 16 5 C -0.04 -1.04 4.12 -19.88 -0.08 -1.12 16 6 C 0.09 2.23 5.42 85.56 0.46 2.70 16 7 N -0.53 -17.47 4.77 -898.87 -4.29 -21.76 16 8 C 0.06 1.79 5.58 86.38 0.48 2.27 16 9 C 0.14 5.92 6.69 86.35 0.58 6.50 16 10 N -0.61 -31.76 3.03 -697.26 -2.11 -33.87 16 11 C -0.26 -14.73 9.63 84.03 0.81 -13.92 16 12 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 13 C -0.05 -2.92 4.93 84.86 0.42 -2.51 16 14 N -0.94 -56.84 11.16 21.65 0.24 -56.60 16 15 Si 0.97 45.65 29.59 68.60 2.03 47.68 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 C 0.19 9.50 5.45 86.50 0.47 9.97 16 20 C 0.05 2.08 4.79 86.53 0.41 2.49 16 21 C -0.11 -2.70 7.11 22.29 0.16 -2.55 16 22 C -0.15 -3.65 5.45 -19.88 -0.11 -3.76 16 23 C 0.51 12.29 3.36 71.23 0.24 12.53 16 24 F -0.18 -4.03 17.30 44.97 0.78 -3.25 16 25 F -0.18 -4.16 16.46 44.97 0.74 -3.42 16 26 F -0.18 -4.96 16.46 44.97 0.74 -4.22 16 27 C -0.16 -3.50 8.39 22.37 0.19 -3.32 16 28 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 30 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 31 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.05 1.20 8.02 -2.38 -0.02 1.18 16 33 H 0.11 2.11 8.08 -2.39 -0.02 2.09 16 34 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 2.56 8.11 -2.39 -0.02 2.54 16 36 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.05 2.98 6.12 -2.38 -0.01 2.96 16 41 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 2.71 5.54 -2.38 -0.01 2.69 16 43 H 0.13 3.33 7.60 -2.91 -0.02 3.31 16 44 H 0.16 2.61 5.84 -2.91 -0.02 2.60 16 Total: -1.00 -67.69 365.22 3.69 -64.00 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.03 Total: 7.50 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.51 Total: 11.35 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -6.16 Total: -112.23 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.97 Total: -7.42 kcal Atomic # 9 Polarization: -13.15 SS G_CDS: 2.26 Total: -10.89 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -67.69 3.69 -64.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529529175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.319 kcal (2) G-P(sol) polarization free energy of solvation -67.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds