Wall clock time and date at job start Wed Apr 1 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48497 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47128 * 300.00092 * 3 2 1 6 6 H 1.48498 * 109.46854 * 60.00129 * 3 2 1 7 7 C 1.39901 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99382 * 198.14834 * 7 2 1 9 9 C 1.41155 * 119.99970 * 18.15283 * 7 2 1 10 10 C 1.40863 * 120.16189 * 217.18605 * 9 7 2 11 11 C 1.36377 * 119.83243 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16371 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83208 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99730 * 205.79137 * 13 12 11 15 15 O 1.21578 * 120.00504 * 351.02249 * 14 13 12 16 16 N 1.34778 * 119.99790 * 171.02547 * 14 13 12 17 17 C 1.46778 * 119.96226 * 7.64515 * 16 14 13 18 18 C 1.53896 * 109.21510 * 124.69213 * 17 16 14 19 19 N 1.47449 * 106.61498 * 47.24623 * 18 17 16 20 20 C 1.33699 * 127.56150 * 123.90991 * 19 18 17 21 21 O 1.21285 * 125.34899 * 18.45572 * 20 19 18 22 22 C 1.51475 * 109.30481 * 198.48879 * 20 19 18 23 23 H 1.09004 * 110.51563 * 216.44104 * 22 20 19 24 24 N 1.46892 * 110.52119 * 93.84315 * 22 20 19 25 25 C 1.54546 * 104.02099 * 335.20475 * 22 20 19 26 26 C 1.47749 * 121.29674 * 304.70781 * 19 18 17 27 27 H 1.08997 * 110.42118 * 296.10095 * 26 19 18 28 28 C 1.47186 * 119.96153 * 187.36648 * 16 14 13 29 29 C 1.39481 * 120.33269 * 0.27816 * 12 11 10 30 30 C 1.36372 * 120.16908 * 359.48205 * 29 12 11 31 31 H 0.96997 * 119.99753 * 359.97438 * 1 2 3 32 32 H 1.08010 * 120.08648 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.91727 * 179.97438 * 11 10 9 34 34 H 0.97001 * 120.00184 * 26.06304 * 13 12 11 35 35 H 1.09004 * 109.51534 * 244.61284 * 17 16 14 36 36 H 1.09002 * 109.51242 * 4.71335 * 17 16 14 37 37 H 1.08992 * 110.02043 * 166.52561 * 18 17 16 38 38 H 1.09000 * 110.01537 * 287.97303 * 18 17 16 39 39 H 1.00902 * 110.99807 * 61.44995 * 24 22 20 40 40 H 1.00892 * 111.00405 * 185.40820 * 24 22 20 41 41 H 1.09004 * 110.70361 * 139.57300 * 25 22 20 42 42 H 1.08999 * 110.70974 * 262.63615 * 25 22 20 43 43 H 1.08995 * 109.79749 * 355.80922 * 28 16 14 44 44 H 1.09001 * 109.79500 * 116.66235 * 28 16 14 45 45 H 1.07998 * 119.91691 * 179.72235 * 29 12 11 46 46 H 1.08003 * 120.08784 * 180.25620 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8840 2.3964 -1.2124 6 1 1.8840 2.3964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0480 -1.2349 0.2908 9 6 1.3551 -2.4034 -0.3819 10 6 1.6484 -3.6133 0.2772 11 6 1.0138 -4.7609 -0.0971 12 6 0.0760 -4.7385 -1.1294 13 7 -0.5675 -5.9144 -1.5063 14 6 -1.0464 -6.0487 -2.7589 15 8 -1.0647 -5.0918 -3.5087 16 7 -1.5052 -7.2439 -3.1803 17 6 -1.6402 -8.3540 -2.2296 18 6 -3.0863 -8.8792 -2.2663 19 7 -3.4404 -9.0401 -3.6886 20 6 -3.8738 -10.1471 -4.3004 21 8 -4.3466 -11.1163 -3.7454 22 6 -3.6808 -10.0010 -5.7957 23 1 -4.5044 -10.4694 -6.3348 24 7 -2.3981 -10.5855 -6.2089 25 6 -3.6788 -8.4727 -6.0254 26 6 -3.3252 -7.9158 -4.6402 27 1 -4.0113 -7.1142 -4.3667 28 6 -1.8762 -7.4326 -4.5921 29 6 -0.2158 -3.5453 -1.7902 30 6 0.4072 -2.3889 -1.4238 31 1 -0.4849 0.8400 0.0004 32 1 2.3740 -3.6321 1.0770 33 1 1.2379 -5.6894 0.4070 34 1 -0.6745 -6.6353 -0.8662 35 1 -0.9547 -9.1552 -2.5057 36 1 -1.4046 -8.0034 -1.2248 37 1 -3.1473 -9.8401 -1.7555 38 1 -3.7562 -8.1609 -1.7938 39 1 -2.3675 -11.5728 -6.0027 40 1 -2.2214 -10.4149 -7.1875 41 1 -2.9211 -8.1941 -6.7579 42 1 -4.6637 -8.1292 -6.3420 43 1 -1.7860 -6.4872 -5.1271 44 1 -1.2257 -8.1790 -5.0481 45 1 -0.9397 -3.5365 -2.5916 46 1 0.1772 -1.4650 -1.9336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582432020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:46 Heat of formation + Delta-G solvation = -25.968029 kcal Electronic energy + Delta-G solvation = -29881.347026 eV Core-core repulsion = 25770.571234 eV Total energy + Delta-G solvation = -4110.775792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25103 -41.28097 -39.34809 -38.22458 -36.80159 -36.19173 -34.93335 -34.47009 -32.99155 -31.39944 -30.91329 -29.37594 -28.94398 -26.73266 -25.01031 -24.51658 -23.26342 -22.80222 -22.12367 -21.25907 -20.23129 -19.21073 -19.12199 -18.13924 -17.56431 -17.23635 -17.11542 -16.87138 -16.71714 -16.37283 -16.24237 -15.75316 -15.47073 -15.19561 -14.94090 -14.67207 -14.59216 -14.42770 -14.28763 -13.97128 -13.75308 -13.62594 -13.34045 -13.28987 -12.95150 -12.87469 -12.71024 -12.61848 -12.42829 -12.37161 -12.14662 -11.77083 -11.52150 -11.19113 -10.95690 -10.82741 -10.51479 -10.36501 -9.76697 -9.44704 -9.40868 -8.71136 -8.47989 -6.23589 0.90000 1.14391 1.33808 1.39757 1.44222 1.49593 1.54789 1.98170 2.14371 2.25977 2.81611 2.87904 3.20453 3.43391 3.54393 3.71587 3.75772 3.81624 4.02219 4.06802 4.16185 4.24731 4.41451 4.43228 4.50771 4.54412 4.62940 4.74921 4.85850 4.93104 4.95902 5.02895 5.10439 5.17360 5.32450 5.36365 5.41791 5.52043 5.59411 5.82059 5.99703 6.02516 6.07464 6.11031 6.16734 6.40865 6.49401 6.72647 6.98108 7.00286 7.03313 7.05233 7.57824 8.44859 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.002137 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.726165 B =13097.644378 C =13510.590214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.035 3.965 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.077 0.923 9 C 0.076 3.924 10 C -0.208 4.208 11 C -0.110 4.110 12 C 0.044 3.956 13 N -0.657 5.657 14 C 0.696 3.304 15 O -0.611 6.611 16 N -0.623 5.623 17 C 0.100 3.900 18 C 0.113 3.887 19 N -0.610 5.610 20 C 0.525 3.475 21 O -0.575 6.575 22 C 0.067 3.933 23 H 0.084 0.916 24 N -0.830 5.830 25 C -0.112 4.112 26 C 0.122 3.878 27 H 0.085 0.915 28 C 0.126 3.874 29 C -0.122 4.122 30 C -0.166 4.166 31 H 0.284 0.716 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.412 0.588 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.351 0.649 40 H 0.367 0.633 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -19.851 -10.860 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.095 0.905 9 C 0.073 3.927 10 C -0.228 4.228 11 C -0.130 4.130 12 C -0.051 4.051 13 N -0.306 5.306 14 C 0.399 3.601 15 O -0.492 6.492 16 N -0.360 5.360 17 C -0.023 4.023 18 C -0.009 4.009 19 N -0.343 5.343 20 C 0.313 3.687 21 O -0.454 6.454 22 C -0.047 4.047 23 H 0.101 0.899 24 N -0.367 5.367 25 C -0.150 4.150 26 C 0.017 3.983 27 H 0.103 0.897 28 C 0.003 3.997 29 C -0.142 4.142 30 C -0.186 4.186 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.154 0.846 34 H 0.252 0.748 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.164 0.836 40 H 0.184 0.816 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.140 0.860 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.344 -19.107 -10.492 23.002 hybrid contribution -0.461 0.183 -0.003 0.496 sum -7.805 -18.924 -10.495 23.004 Atomic orbital electron populations 1.69908 1.08999 1.30141 1.37766 1.26652 0.95376 1.04205 0.91558 0.85255 0.79587 0.76752 0.78646 1.18028 1.19456 1.19159 1.19643 0.98436 0.92560 1.43659 0.90529 1.17955 0.91455 0.93580 0.89689 1.20914 1.05737 0.93397 1.02750 1.20338 0.96046 0.98441 0.98214 1.17160 1.00634 0.85010 1.02272 1.42063 1.59297 1.17679 1.11534 1.16102 0.78634 0.83407 0.81966 1.90790 1.63281 1.38410 1.56703 1.47251 1.68659 1.09360 1.10774 1.22196 0.96859 0.89517 0.93730 1.22245 0.95152 1.03013 0.80532 1.48563 1.64481 1.11774 1.09445 1.21106 0.75287 0.81249 0.91039 1.90704 1.45669 1.35450 1.73617 1.21983 0.94038 0.97308 0.91411 0.89870 1.58486 1.30555 1.20826 1.26801 1.22513 1.05540 0.91911 0.95062 1.22143 0.96928 0.88852 0.90355 0.89722 1.21943 0.94721 1.02735 0.80288 1.21131 1.00722 0.91723 1.00639 1.20722 1.02707 0.95933 0.99205 0.90623 0.87163 0.84564 0.74825 0.89416 0.87817 0.87618 0.90357 0.83580 0.81623 0.86536 0.87227 0.89133 0.88952 0.85952 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.69 11.90 21.82 0.26 -46.43 16 2 C 0.04 1.85 5.05 85.24 0.43 2.28 16 3 Si 0.98 40.12 29.60 68.60 2.03 42.15 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.51 -28.44 8.96 23.39 0.21 -28.23 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.08 4.18 5.39 -21.28 -0.11 4.06 16 10 C -0.21 -9.96 9.74 22.48 0.22 -9.74 16 11 C -0.11 -4.50 9.87 22.14 0.22 -4.28 16 12 C 0.04 1.86 6.48 38.57 0.25 2.11 16 13 N -0.66 -21.17 5.23 -316.79 -1.66 -22.83 16 14 C 0.70 22.91 8.16 179.05 1.46 24.37 16 15 O -0.61 -25.67 12.50 -3.96 -0.05 -25.72 16 16 N -0.62 -14.20 2.94 -835.95 -2.45 -16.65 16 17 C 0.10 1.59 6.53 86.63 0.57 2.16 16 18 C 0.11 1.79 7.10 86.50 0.61 2.41 16 19 N -0.61 -10.59 2.92 -790.79 -2.31 -12.89 16 20 C 0.53 10.29 7.65 88.07 0.67 10.96 16 21 O -0.58 -15.90 17.82 -3.04 -0.05 -15.95 16 22 C 0.07 0.76 4.11 44.94 0.18 0.95 16 23 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 24 N -0.83 -7.48 9.26 -168.58 -1.56 -9.04 16 25 C -0.11 -0.98 6.39 31.27 0.20 -0.78 16 26 C 0.12 1.84 3.76 44.84 0.17 2.01 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 C 0.13 2.42 5.81 86.19 0.50 2.92 16 29 C -0.12 -6.17 8.78 22.13 0.19 -5.98 16 30 C -0.17 -9.25 8.63 22.48 0.19 -9.05 16 31 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 32 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.41 9.68 6.22 -92.71 -0.58 9.11 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.34 5.55 -2.39 -0.01 1.32 16 37 H 0.11 1.58 7.99 -2.39 -0.02 1.56 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.35 3.27 9.06 -89.69 -0.81 2.46 16 40 H 0.37 1.53 9.02 -89.70 -0.81 0.72 16 41 H 0.12 0.69 7.69 -2.38 -0.02 0.68 16 42 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 2.07 6.95 -2.39 -0.02 2.05 16 44 H 0.09 1.61 8.11 -2.39 -0.02 1.59 16 45 H 0.12 6.36 5.33 -3.05 -0.02 6.35 16 46 H 0.08 4.62 7.13 -2.91 -0.02 4.60 16 Total: -1.00 -77.16 371.99 -0.96 -78.12 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -1.14 Total: 33.07 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.97 Total: -3.84 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -7.72 Total: -107.84 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.10 Total: -41.67 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -77.16 -0.96 -78.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582432020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.153 kcal (2) G-P(sol) polarization free energy of solvation -77.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds