Wall clock time and date at job start Wed Apr 1 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99647 * 2 1 4 4 H 1.48497 * 109.47144 * 269.99896 * 3 2 1 5 5 H 1.48499 * 109.47285 * 30.00195 * 3 2 1 6 6 H 1.48505 * 109.46764 * 149.99721 * 3 2 1 7 7 C 1.37873 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99513 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00461 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.88554 * 62.42631 * 9 7 2 11 11 C 1.55153 * 111.03871 * 186.33336 * 9 7 2 12 12 C 1.54338 * 103.02137 * 153.39552 * 11 9 7 13 13 N 1.47023 * 107.26455 * 338.14190 * 12 11 9 14 14 C 1.34773 * 125.64869 * 178.85033 * 13 12 11 15 15 O 1.21588 * 119.99914 * 179.68641 * 14 13 12 16 16 N 1.34772 * 119.99940 * 359.68982 * 14 13 12 17 17 C 1.46504 * 120.00202 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47446 * 179.97438 * 17 16 14 19 19 N 1.46504 * 109.47446 * 180.02562 * 18 17 16 20 20 C 1.36039 * 126.34883 * 264.97761 * 19 18 17 21 21 N 1.30105 * 110.09365 * 180.02562 * 20 19 18 22 22 C 1.35784 * 109.64857 * 359.97438 * 21 20 19 23 23 C 1.39747 * 133.60087 * 180.02562 * 22 21 20 24 24 C 1.36602 * 119.88190 * 179.97438 * 23 22 21 25 25 C 1.38779 * 120.66936 * 0.02562 * 24 23 22 26 26 C 1.37850 * 120.45381 * 0.02562 * 25 24 23 27 27 C 1.38049 * 126.34537 * 84.99755 * 19 18 17 28 28 C 1.47430 * 108.70232 * 358.58300 * 13 12 11 29 29 H 0.97005 * 120.00071 * 359.97438 * 1 2 3 30 30 H 0.96700 * 113.99764 * 297.57422 * 10 9 7 31 31 H 1.09000 * 110.71980 * 271.94919 * 11 9 7 32 32 H 1.08999 * 110.71935 * 35.22517 * 11 9 7 33 33 H 1.08994 * 109.99293 * 218.66361 * 12 11 9 34 34 H 1.08996 * 109.77683 * 97.49469 * 12 11 9 35 35 H 0.97005 * 120.00188 * 359.97438 * 16 14 13 36 36 H 1.09000 * 109.46793 * 60.00023 * 17 16 14 37 37 H 1.09001 * 109.46903 * 300.00074 * 17 16 14 38 38 H 1.09000 * 109.47007 * 60.00275 * 18 17 16 39 39 H 1.09001 * 109.47228 * 299.99995 * 18 17 16 40 40 H 1.07996 * 124.94773 * 0.02562 * 20 19 18 41 41 H 1.07998 * 120.05391 * 359.95854 * 23 22 21 42 42 H 1.08001 * 119.66175 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.76674 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.15388 * 180.02562 * 26 25 24 45 45 H 1.08995 * 110.36552 * 143.19903 * 28 13 12 46 46 H 1.08997 * 110.36470 * 265.40845 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1837 11 6 2.2191 -3.7011 0.1586 12 6 1.3292 -4.7805 0.8105 13 7 0.2064 -4.0871 1.4588 14 6 -0.8064 -4.6806 2.1208 15 8 -1.6822 -4.0043 2.6247 16 7 -0.8483 -6.0237 2.2245 17 6 -1.9489 -6.6688 2.9446 18 6 -1.7586 -8.1866 2.9135 19 7 -2.8595 -8.8318 3.6331 20 6 -2.8528 -9.2199 4.9370 21 7 -3.9949 -9.7595 5.2487 22 6 -4.8133 -9.7539 4.1652 23 6 -6.1198 -10.1968 3.9421 24 6 -6.6876 -10.0479 2.7086 25 6 -5.9796 -9.4602 1.6697 26 6 -4.6892 -9.0169 1.8665 27 6 -4.0960 -9.1590 3.1137 28 6 0.3754 -2.6347 1.2701 29 1 -0.4850 0.8401 0.0004 30 1 -0.2253 -1.9558 -1.2758 31 1 2.5836 -4.0340 -0.8133 32 1 3.0498 -3.4429 0.8154 33 1 1.9010 -5.3357 1.5540 34 1 0.9533 -5.4599 0.0456 35 1 -0.1497 -6.5632 1.8222 36 1 -2.8950 -6.4118 2.4681 37 1 -1.9577 -6.3245 3.9788 38 1 -0.8125 -8.4439 3.3898 39 1 -1.7501 -8.5306 1.8792 40 1 -2.0207 -9.0977 5.6145 41 1 -6.6795 -10.6561 4.7434 42 1 -7.6974 -10.3917 2.5400 43 1 -6.4428 -9.3493 0.7004 44 1 -4.1428 -8.5599 1.0548 45 1 -0.5922 -2.1570 1.1168 46 1 0.8817 -2.1969 2.1303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591958216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:12 Heat of formation + Delta-G solvation = 5.818105 kcal Electronic energy + Delta-G solvation = -29265.044519 eV Core-core repulsion = 25155.647077 eV Total energy + Delta-G solvation = -4109.397442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40593 -39.78683 -37.76531 -37.45428 -35.75608 -34.31044 -33.65522 -32.26698 -30.97821 -30.18938 -29.56311 -28.64782 -27.71163 -25.20590 -23.72335 -23.49629 -22.51269 -22.24323 -20.87880 -19.75170 -19.63753 -17.80470 -17.51894 -17.28673 -17.05650 -16.13341 -16.04036 -15.71616 -15.40423 -15.02194 -14.80631 -14.49046 -14.33643 -14.06991 -14.04232 -13.83260 -13.32544 -13.08456 -12.85744 -12.82699 -12.30515 -12.15645 -11.99162 -11.85487 -11.71406 -11.69675 -11.46450 -11.06722 -10.88753 -10.68021 -10.66965 -10.50299 -10.24523 -10.20036 -9.76807 -9.42056 -9.06840 -8.73396 -8.62422 -8.41639 -8.36136 -7.79171 -6.30900 -4.40982 0.72093 1.27262 2.11937 2.54771 3.07306 3.19288 3.26676 3.28540 3.60838 3.65685 4.02059 4.18278 4.20724 4.25997 4.35306 4.40804 4.72463 4.78476 4.81948 4.95996 5.16055 5.18179 5.21369 5.31981 5.41539 5.51177 5.56103 5.57648 5.70610 5.88991 5.92489 6.02534 6.16999 6.27752 6.28574 6.43920 6.48107 6.61844 6.63279 6.81667 6.82417 6.85683 7.15869 7.26218 7.50861 7.60157 7.70866 7.98872 8.40077 8.63010 8.98854 9.25870 9.34306 10.76114 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023066 B = 0.001998 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.597203 B =14007.555500 C =14276.614501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.626 5.626 14 C 0.718 3.282 15 O -0.593 6.593 16 N -0.751 5.751 17 C 0.127 3.873 18 C 0.102 3.898 19 N -0.488 5.488 20 C 0.264 3.736 21 N -0.497 5.497 22 C 0.044 3.956 23 C -0.066 4.066 24 C -0.129 4.129 25 C -0.102 4.102 26 C -0.107 4.107 27 C 0.049 3.951 28 C 0.113 3.887 29 H 0.270 0.730 30 H 0.381 0.619 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.214 0.786 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.086 0.914 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 -20.266 4.414 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.363 5.363 14 C 0.419 3.581 15 O -0.471 6.471 16 N -0.410 5.410 17 C 0.001 3.999 18 C -0.021 4.021 19 N -0.179 5.179 20 C -0.021 4.021 21 N -0.216 5.216 22 C -0.074 4.074 23 C -0.085 4.085 24 C -0.149 4.149 25 C -0.122 4.122 26 C -0.128 4.128 27 C -0.060 4.060 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.231 0.769 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.228 0.772 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.231 0.769 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.104 0.896 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.358 -20.438 5.470 21.825 hybrid contribution 0.785 1.532 -0.782 1.891 sum -4.573 -18.906 4.688 20.008 Atomic orbital electron populations 1.69715 1.05988 1.27965 1.49319 1.25087 0.95046 0.99795 0.93324 0.86403 0.79760 0.82439 0.78304 1.20385 1.20996 1.19702 1.21439 0.93625 0.90003 1.52627 0.91513 1.19631 0.86616 0.91587 0.81380 1.86097 1.51535 1.57189 1.44346 1.22593 0.97553 0.95147 1.00095 1.21947 0.88294 0.96149 0.95504 1.47951 1.23125 1.09906 1.55321 1.15435 0.82002 0.81008 0.79606 1.90916 1.39598 1.63057 1.53507 1.44878 1.28710 1.05797 1.61607 1.21333 0.90974 0.89481 0.98150 1.21930 0.88714 0.92694 0.98740 1.45251 1.11965 1.49599 1.11064 1.25409 0.97982 0.95407 0.83324 1.70466 1.01667 1.21895 1.27527 1.19076 0.95603 1.03190 0.89548 1.20022 0.91713 0.99291 0.97505 1.20663 1.00330 1.01226 0.92675 1.20919 0.93427 0.98409 0.99429 1.20030 0.95840 1.03072 0.93870 1.18910 0.86679 1.03586 0.96787 1.23177 1.02656 0.75412 0.99631 0.91952 0.76867 0.90718 0.90378 0.93082 0.92653 0.77212 0.91144 0.91042 0.87801 0.88535 0.76930 0.85450 0.85377 0.85215 0.85898 0.89599 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.50 10.69 55.43 0.59 -22.91 16 2 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.65 8.27 -34.44 -0.28 -13.93 16 8 H 0.07 1.65 7.79 -52.48 -0.41 1.25 16 9 C 0.25 5.80 0.87 -89.63 -0.08 5.72 16 10 O -0.58 -14.42 13.16 -35.23 -0.46 -14.88 16 11 C -0.12 -2.16 6.13 -24.89 -0.15 -2.31 16 12 C 0.10 1.67 6.15 -3.06 -0.02 1.65 16 13 N -0.63 -12.31 3.33 -176.23 -0.59 -12.89 16 14 C 0.72 13.80 8.49 -86.93 -0.74 13.07 16 15 O -0.59 -14.05 16.60 5.29 0.09 -13.96 16 16 N -0.75 -9.82 5.52 -65.23 -0.36 -10.18 16 17 C 0.13 1.42 6.00 -4.04 -0.02 1.40 16 18 C 0.10 0.74 6.27 -4.04 -0.03 0.71 16 19 N -0.49 -4.60 2.81 -115.80 -0.32 -4.93 16 20 C 0.26 2.47 12.50 -89.79 -1.12 1.35 16 21 N -0.50 -6.13 11.27 -12.05 -0.14 -6.27 16 22 C 0.04 0.54 7.23 -84.70 -0.61 -0.08 16 23 C -0.07 -0.68 10.05 -39.61 -0.40 -1.08 16 24 C -0.13 -1.11 9.96 -39.97 -0.40 -1.51 16 25 C -0.10 -0.89 10.03 -39.52 -0.40 -1.29 16 26 C -0.11 -1.07 10.05 -39.50 -0.40 -1.47 16 27 C 0.05 0.55 6.87 -83.99 -0.58 -0.03 16 28 C 0.11 2.65 5.38 -2.53 -0.01 2.64 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.38 9.77 7.56 45.56 0.34 10.11 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.39 3.93 7.46 -40.82 -0.30 3.62 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.21 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.09 2.30 7.33 -51.93 -0.38 1.92 16 46 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -33.46 385.56 -11.52 -44.99 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -5.79 Total: 13.63 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -5.33 Total: 6.57 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.81 Total: -57.18 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.38 Total: -28.84 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.46 -11.52 -44.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591958216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.804 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds