Wall clock time and date at job start Wed Apr 1 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36001 * 116.99714 * 2 1 4 4 C 1.38160 * 120.00501 * 359.97438 * 3 2 1 5 5 C 1.39747 * 119.84784 * 180.02562 * 4 3 2 6 6 C 1.43199 * 120.07478 * 179.97438 * 5 4 3 7 7 N 5.84103 * 81.26287 * 359.97438 * 2 1 3 8 8 C 1.39723 * 119.84908 * 0.02562 * 5 4 3 9 9 C 1.37830 * 119.99304 * 359.97438 * 8 5 4 10 10 C 1.38798 * 120.15298 * 0.28171 * 9 8 5 11 11 O 1.35851 * 119.92090 * 179.69998 * 10 9 8 12 12 C 1.42899 * 116.99851 * 359.97438 * 11 10 9 13 13 C 1.50699 * 109.47065 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00080 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99818 * 179.97438 * 13 12 11 16 16 C 1.46918 * 120.63025 * 359.72790 * 15 13 12 17 17 C 1.52766 * 109.00930 * 233.57941 * 16 15 13 18 18 C 1.53046 * 109.38191 * 305.58959 * 17 16 15 19 19 C 1.53037 * 109.53709 * 61.23617 * 18 17 16 20 20 H 1.08998 * 109.50176 * 58.58634 * 19 18 17 21 21 C 1.50697 * 109.49681 * 178.68418 * 19 18 17 22 22 H 1.07999 * 120.00160 * 359.83974 * 21 19 18 23 23 C 1.37886 * 120.00081 * 179.83644 * 21 19 18 24 24 N 1.31516 * 119.99778 * 0.02562 * 23 21 19 25 25 Si 1.86794 * 119.99917 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47335 * 60.00692 * 25 23 21 27 27 H 1.48499 * 109.46953 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47503 * 299.99915 * 25 23 21 29 29 C 1.46928 * 120.62769 * 180.02562 * 15 13 12 30 30 H 1.09004 * 109.47424 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47382 * 300.00392 * 1 2 3 32 32 H 1.09000 * 109.46978 * 60.00314 * 1 2 3 33 33 H 1.08006 * 120.07455 * 0.04538 * 4 3 2 34 34 H 1.07997 * 120.00160 * 180.02562 * 8 5 4 35 35 H 1.08002 * 119.91848 * 179.97438 * 9 8 5 36 36 H 1.09002 * 109.47277 * 300.00254 * 12 11 10 37 37 H 1.09000 * 109.47277 * 60.00072 * 12 11 10 38 38 H 1.09001 * 109.58984 * 353.41304 * 16 15 13 39 39 H 1.08999 * 109.59214 * 113.84171 * 16 15 13 40 40 H 1.08998 * 109.56691 * 185.55415 * 17 16 15 41 41 H 1.09002 * 109.38535 * 65.51427 * 17 16 15 42 42 H 1.09003 * 109.45736 * 301.22055 * 18 17 16 43 43 H 1.08994 * 109.44552 * 181.24922 * 18 17 16 44 44 H 0.96996 * 119.99690 * 179.97438 * 24 23 21 45 45 H 1.09004 * 109.58382 * 246.15876 * 29 15 13 46 46 H 1.08993 * 109.58790 * 6.58344 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2939 2.3705 -0.0005 5 6 1.9317 3.6140 -0.0011 6 6 1.1566 4.8181 -0.0022 7 7 0.5417 5.7732 -0.0026 8 6 3.3274 3.6797 -0.0016 9 6 4.0718 2.5197 -0.0011 10 6 3.4382 1.2847 -0.0059 11 8 4.1765 0.1444 -0.0115 12 6 5.5979 0.2918 -0.0127 13 6 6.2441 -1.0696 -0.0185 14 8 5.5553 -2.0678 -0.0218 15 7 7.5876 -1.1778 -0.0210 16 6 8.4352 0.0222 -0.0242 17 6 9.4204 -0.0676 -1.1883 18 6 10.1949 -1.3845 -1.0978 19 6 9.2196 -2.5597 -1.1963 20 1 8.6728 -2.5008 -2.1374 21 6 9.9864 -3.8557 -1.1395 22 1 11.0622 -3.8430 -1.0454 23 6 9.3144 -5.0579 -1.2076 24 7 8.0044 -5.0733 -1.3226 25 14 10.2650 -6.6644 -1.1380 26 1 11.0114 -6.7428 0.1435 27 1 9.3178 -7.8043 -1.2302 28 1 11.2214 -6.7233 -2.2724 29 6 8.2322 -2.4981 -0.0272 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2153 2.3155 -0.0002 34 1 3.8228 4.6393 -0.0016 35 1 5.1505 2.5718 -0.0019 36 1 5.9052 0.8441 -0.9008 37 1 5.9074 0.8367 0.8792 38 1 7.8126 0.9091 -0.1419 39 1 8.9870 0.0824 0.9139 40 1 10.1179 0.7687 -1.1415 41 1 8.8722 -0.0319 -2.1298 42 1 10.7235 -1.4301 -0.1455 43 1 10.9137 -1.4396 -1.9152 44 1 7.5318 -5.9189 -1.3709 45 1 8.7670 -2.6480 0.9107 46 1 7.4756 -3.2735 -0.1468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:20 Heat of formation + Delta-G solvation = -48.201660 kcal Electronic energy + Delta-G solvation = -29392.404560 eV Core-core repulsion = 25248.371894 eV Total energy + Delta-G solvation = -4144.032666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01529 -39.68421 -38.51984 -37.87726 -36.68784 -36.12549 -33.49195 -31.89630 -31.08843 -30.87074 -30.00073 -28.35533 -27.63353 -25.10921 -24.52710 -23.64670 -22.64125 -21.89163 -20.05067 -19.72110 -18.47020 -18.39049 -17.17615 -16.81910 -16.56575 -16.43840 -15.96640 -15.75962 -15.40789 -14.95046 -14.57789 -14.34743 -14.32478 -14.08671 -13.94939 -13.80132 -13.67546 -13.26233 -12.87873 -12.74645 -12.66919 -12.64415 -12.42606 -12.12984 -11.94749 -11.71042 -11.62356 -11.38818 -11.17020 -11.04430 -10.94334 -10.56842 -10.47305 -10.28162 -9.95756 -9.35170 -9.23199 -9.16991 -8.94130 -8.46606 -8.18222 -7.85202 -6.02225 -4.11567 0.41771 0.88887 2.33350 2.58980 2.60116 2.96323 3.05994 3.30660 3.37074 3.37897 3.46795 3.52661 3.77309 4.33464 4.40988 4.45976 4.66483 4.71021 4.75910 4.90118 4.91719 4.96483 5.00884 5.14631 5.16234 5.27628 5.28067 5.39702 5.46822 5.56017 5.69658 5.84399 5.87789 6.06016 6.08061 6.23177 6.52061 6.59017 6.70875 6.80209 6.90873 7.06004 7.15341 7.17844 7.25712 7.58970 7.81926 7.94297 8.13471 8.34471 8.73150 8.92458 9.54390 11.03011 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002326 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.432668 B =12035.639002 C =13384.768026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.294 6.294 3 C 0.102 3.898 4 C -0.128 4.128 5 C -0.040 4.040 6 C 0.262 3.738 7 N -0.425 5.425 8 C -0.058 4.058 9 C -0.183 4.183 10 C 0.143 3.857 11 O -0.268 6.268 12 C 0.036 3.964 13 C 0.507 3.493 14 O -0.509 6.509 15 N -0.603 5.603 16 C 0.107 3.893 17 C -0.135 4.135 18 C -0.111 4.111 19 C 0.040 3.960 20 H 0.029 0.971 21 C -0.523 4.523 22 H 0.058 0.942 23 C 0.063 3.937 24 N -0.880 5.880 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.114 3.886 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.265 0.735 45 H 0.045 0.955 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 17.108 3.569 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C 0.056 3.944 4 C -0.149 4.149 5 C -0.044 4.044 6 C -0.053 4.053 7 N -0.101 5.101 8 C -0.079 4.079 9 C -0.202 4.202 10 C 0.094 3.906 11 O -0.178 6.178 12 C -0.042 4.042 13 C 0.291 3.709 14 O -0.384 6.384 15 N -0.338 5.338 16 C -0.017 4.017 17 C -0.173 4.173 18 C -0.149 4.149 19 C 0.021 3.979 20 H 0.047 0.953 21 C -0.562 4.562 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.517 5.517 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.203 1.203 29 C -0.006 4.006 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.508 17.470 3.558 20.694 hybrid contribution 0.730 -0.832 0.006 1.107 sum -9.777 16.637 3.564 19.624 Atomic orbital electron populations 1.23152 0.78314 1.04614 1.01122 1.86339 1.21131 1.24688 1.88513 1.17992 0.89017 0.85382 1.02019 1.20967 1.00291 0.89767 1.03880 1.15567 0.91617 0.86720 1.10447 1.25594 0.93363 0.92859 0.93437 1.81265 1.08609 1.10677 1.09499 1.20846 0.91195 0.98800 0.97034 1.21049 1.01078 0.90340 1.07694 1.18669 0.88615 0.86407 0.96896 1.86321 1.17567 1.26980 1.86953 1.22793 0.79430 0.98699 1.03293 1.19741 0.82945 0.89483 0.78716 1.90787 1.61746 1.37929 1.47894 1.48460 1.03888 1.09318 1.72132 1.21603 0.93541 0.87093 0.99451 1.21886 0.98059 0.99359 0.98034 1.21630 0.98534 0.94029 1.00688 1.18966 0.92148 0.92306 0.94499 0.95264 1.21021 0.93261 0.90079 1.51790 0.92369 1.25064 0.94917 0.99299 0.94766 1.69865 1.06461 1.26722 1.48630 0.86642 0.79651 0.83042 0.78576 1.20233 1.21242 1.20291 1.22360 0.98312 0.81182 0.98747 0.87732 0.92593 0.92553 0.83829 0.84380 0.83466 0.89015 0.89141 0.91537 0.91594 0.92006 0.92053 0.93082 0.92900 0.92481 0.93688 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.29 -3.60 10.27 -34.42 -0.35 -3.95 16 3 C 0.10 1.12 6.69 -39.19 -0.26 0.86 16 4 C -0.13 -1.07 8.74 -39.05 -0.34 -1.41 16 5 C -0.04 -0.32 5.74 -106.85 -0.61 -0.94 16 6 C 0.26 2.47 15.33 -22.47 -0.34 2.13 16 7 N -0.42 -4.94 18.54 41.84 0.78 -4.16 16 8 C -0.06 -0.41 9.74 -39.18 -0.38 -0.79 16 9 C -0.18 -1.47 9.01 -39.52 -0.36 -1.82 16 10 C 0.14 1.64 6.71 -38.95 -0.26 1.38 16 11 O -0.27 -4.01 9.44 -46.96 -0.44 -4.45 16 12 C 0.04 0.47 3.56 36.01 0.13 0.59 16 13 C 0.51 9.54 7.78 -10.98 -0.09 9.46 16 14 O -0.51 -12.40 15.91 -14.35 -0.23 -12.63 16 15 N -0.60 -11.08 2.98 -173.06 -0.52 -11.60 16 16 C 0.11 1.41 6.31 -3.93 -0.02 1.38 16 17 C -0.14 -1.92 6.07 -26.83 -0.16 -2.08 16 18 C -0.11 -2.05 5.11 -26.69 -0.14 -2.19 16 19 C 0.04 0.94 2.25 -91.68 -0.21 0.74 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 21 C -0.52 -13.73 8.56 -34.44 -0.29 -14.03 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 24 N -0.88 -25.25 11.39 55.43 0.63 -24.62 16 25 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 C 0.11 2.62 5.40 -3.73 -0.02 2.60 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 33 H 0.14 0.90 6.29 -52.48 -0.33 0.57 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.15 0.83 6.27 -52.49 -0.33 0.50 16 36 H 0.09 0.92 7.19 -51.93 -0.37 0.54 16 37 H 0.09 0.84 7.46 -51.93 -0.39 0.45 16 38 H 0.07 0.62 5.93 -51.93 -0.31 0.31 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.12 3.41 5.12 -51.93 -0.27 3.14 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -34.38 384.33 -7.96 -42.34 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.14 Total: -1.26 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.47 Total: -1.34 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.89 Total: -40.38 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.03 Total: -21.03 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.38 -7.96 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.857 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds