Wall clock time and date at job start Wed Apr 1 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47326 * 271.02230 * 3 2 1 5 5 H 1.48497 * 109.47381 * 31.02910 * 3 2 1 6 6 H 1.48510 * 109.46935 * 151.02735 * 3 2 1 7 7 C 1.37879 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00494 * 358.54451 * 7 2 1 9 9 C 1.50704 * 119.99641 * 178.54632 * 7 2 1 10 10 C 1.52995 * 115.55067 * 86.53008 * 9 7 2 11 11 N 1.46904 * 109.47048 * 64.75680 * 10 9 7 12 12 C 1.46897 * 110.99748 * 185.15719 * 11 10 9 13 13 H 1.09003 * 110.04945 * 34.84329 * 12 11 10 14 14 C 1.55048 * 110.02994 * 273.43426 * 12 11 10 15 15 S 1.83293 * 102.56685 * 198.27798 * 14 12 11 16 16 O 1.42099 * 109.35332 * 269.81659 * 15 14 12 17 17 O 1.42095 * 109.47343 * 136.64589 * 15 14 12 18 18 C 1.82920 * 97.01570 * 23.21470 * 15 14 12 19 19 C 1.53877 * 110.02251 * 156.24369 * 12 11 10 20 20 H 1.08993 * 109.64894 * 46.62405 * 19 12 11 21 21 N 1.46903 * 109.54088 * 286.25685 * 19 12 11 22 22 C 1.47006 * 111.00306 * 300.10106 * 21 19 12 23 23 C 1.53092 * 109.25940 * 177.60538 * 22 21 19 24 24 O 1.43017 * 109.26112 * 56.84604 * 23 22 21 25 25 C 1.43019 * 113.73727 * 301.33185 * 24 23 22 26 26 C 1.47011 * 110.99901 * 176.45989 * 21 19 12 27 27 C 1.53007 * 117.49454 * 232.20409 * 9 7 2 28 28 C 1.53004 * 117.49754 * 300.86194 * 9 7 2 29 29 H 0.97005 * 119.99634 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47320 * 304.75414 * 10 9 7 31 31 H 1.09003 * 109.47049 * 184.75644 * 10 9 7 32 32 H 1.00899 * 110.99592 * 61.20559 * 11 10 9 33 33 H 1.09002 * 110.78528 * 80.01061 * 14 12 11 34 34 H 1.08996 * 110.94997 * 316.62081 * 14 12 11 35 35 H 1.09003 * 110.31505 * 243.22224 * 18 15 14 36 36 H 1.08996 * 110.40065 * 121.07563 * 18 15 14 37 37 H 1.09006 * 109.50465 * 297.54016 * 22 21 19 38 38 H 1.09000 * 109.50808 * 57.66374 * 22 21 19 39 39 H 1.08999 * 109.50881 * 296.91272 * 23 22 21 40 40 H 1.09006 * 109.50967 * 176.77947 * 23 22 21 41 41 H 1.08998 * 109.50543 * 298.73723 * 25 24 23 42 42 H 1.08996 * 109.54143 * 178.62547 * 25 24 23 43 43 H 1.09004 * 109.51066 * 302.33134 * 26 21 19 44 44 H 1.08996 * 109.50765 * 62.46472 * 26 21 19 45 45 H 1.09000 * 117.49374 * 214.99723 * 27 9 7 46 46 H 1.08996 * 117.49750 * 0.02562 * 27 9 7 47 47 H 1.09004 * 117.49582 * 359.97438 * 28 9 7 48 48 H 1.08997 * 117.50144 * 144.97732 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4750 2.0589 -1.3998 5 1 1.4577 2.6463 0.7217 6 1 3.5575 1.4339 0.6782 7 6 2.0044 -1.1941 -0.0005 8 1 1.4647 -2.1292 0.0228 9 6 3.5111 -1.1944 -0.0336 10 6 4.2011 -1.0941 1.3282 11 7 3.8965 -2.2928 2.1209 12 6 4.4413 -2.1774 3.4802 13 1 4.3863 -1.1425 3.8182 14 6 5.9121 -2.6672 3.5063 15 16 6.1981 -2.9760 5.2902 16 8 6.6940 -1.7919 5.8995 17 8 6.8978 -4.2020 5.4526 18 6 4.4459 -3.2113 5.7599 19 6 3.6570 -3.0880 4.4412 20 1 3.5348 -4.0743 3.9938 21 7 2.3375 -2.4999 4.7083 22 6 2.4677 -1.1691 5.3191 23 6 1.0742 -0.5695 5.5249 24 8 0.2916 -1.4588 6.3262 25 6 0.1438 -2.7641 5.7608 26 6 1.5280 -3.3859 5.5573 27 6 4.1938 -2.0393 -1.1112 28 6 4.1917 -0.5126 -1.2223 29 1 -0.4850 0.8401 0.0004 30 1 3.8409 -0.2098 1.8537 31 1 5.2789 -1.0176 1.1847 32 1 4.2383 -3.1249 1.6638 33 1 6.5841 -1.8935 3.1350 34 1 6.0272 -3.5860 2.9313 35 1 4.1348 -2.4368 6.4610 36 1 4.2993 -4.1985 6.1980 37 1 2.9714 -1.2581 6.2817 38 1 3.0489 -0.5223 4.6620 39 1 0.5911 -0.4307 4.5577 40 1 1.1628 0.3926 6.0297 41 1 -0.3662 -2.6891 4.8004 42 1 -0.4407 -3.3896 6.4354 43 1 1.4231 -4.3573 5.0740 44 1 2.0166 -3.5104 6.5237 45 1 5.1346 -2.5237 -0.8497 46 1 3.5533 -2.5946 -1.7962 47 1 3.5496 -0.0643 -1.9806 48 1 5.1308 0.0076 -1.0341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602790447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:13 Heat of formation + Delta-G solvation = -54.301424 kcal Electronic energy + Delta-G solvation = -30483.379791 eV Core-core repulsion = 26474.526570 eV Total energy + Delta-G solvation = -4008.853220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.07999 -38.05834 -37.24406 -36.94073 -36.21964 -34.74629 -32.01954 -31.73734 -31.16136 -29.22916 -27.08759 -26.08591 -24.92367 -24.17195 -23.19188 -21.70996 -21.08586 -19.89467 -19.07423 -18.89323 -17.40116 -16.84374 -16.44491 -16.22619 -16.00033 -15.90172 -15.27401 -15.04772 -14.90888 -14.67545 -14.55575 -14.50180 -14.05243 -13.70726 -13.55313 -13.11492 -12.92473 -12.61145 -12.53570 -12.36867 -12.26600 -12.23464 -11.96793 -11.89188 -11.70232 -11.31018 -11.24392 -11.11276 -10.85189 -10.70696 -10.60001 -10.46617 -10.34515 -10.10301 -9.63567 -9.56868 -9.06301 -8.53574 -8.48175 -8.31679 -7.86979 -6.01380 -4.00223 -0.20514 2.29160 3.29439 3.30379 3.39689 3.40587 3.55488 3.77403 3.93415 4.02934 4.33959 4.42253 4.46646 4.51274 4.67505 4.76373 4.93120 5.00871 5.02311 5.05527 5.16463 5.23075 5.25048 5.33910 5.38544 5.51436 5.59460 5.64555 5.76780 5.78427 5.87547 5.89434 5.97334 6.08307 6.09012 6.12389 6.33950 6.42141 6.68957 6.88253 6.92332 7.02052 7.12188 7.20600 7.49501 7.72495 7.86826 8.60751 9.05115 9.61998 11.11188 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.005083 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.685554 B = 5507.496054 C = 7410.521416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.010 3.990 10 C 0.097 3.903 11 N -0.627 5.627 12 C 0.097 3.903 13 H 0.102 0.898 14 C -0.624 4.624 15 S 2.392 3.608 16 O -0.938 6.938 17 O -0.942 6.942 18 C -0.641 4.641 19 C 0.109 3.891 20 H 0.110 0.890 21 N -0.490 5.490 22 C 0.007 3.993 23 C 0.063 3.937 24 O -0.389 6.389 25 C 0.062 3.938 26 C 0.018 3.982 27 C -0.184 4.184 28 C -0.204 4.204 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.005 0.995 32 H 0.340 0.660 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -6.069 11.249 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.097 0.903 9 C 0.009 3.991 10 C -0.031 4.031 11 N -0.255 5.255 12 C -0.017 4.017 13 H 0.119 0.881 14 C -0.757 4.757 15 S 2.574 3.426 16 O -0.935 6.935 17 O -0.939 6.939 18 C -0.772 4.772 19 C -0.002 4.002 20 H 0.128 0.872 21 N -0.213 5.213 22 C -0.121 4.121 23 C -0.014 4.014 24 O -0.308 6.308 25 C -0.015 4.015 26 C -0.110 4.110 27 C -0.221 4.221 28 C -0.242 4.242 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.023 0.977 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.286 -5.647 11.686 14.884 hybrid contribution 1.346 0.704 -0.187 1.530 sum 8.632 -4.944 11.499 15.204 Atomic orbital electron populations 1.69891 1.06188 1.26588 1.51204 1.24898 0.94463 0.98518 0.94617 0.86949 0.80351 0.84118 0.78147 1.20907 1.22333 1.18746 1.20099 0.85803 0.94295 1.49277 0.90321 1.19403 0.95602 0.98789 0.85301 1.21843 0.94183 0.92031 0.95070 1.60010 1.60933 1.05431 0.99169 1.22403 0.85141 0.99952 0.94160 0.88062 1.31454 1.08287 1.11938 1.24022 1.08890 0.78455 0.75413 0.79793 1.93617 1.77758 1.47947 1.74209 1.93601 1.70169 1.44910 1.85199 1.31292 1.24198 1.12429 1.09302 1.22165 0.88528 1.00395 0.89100 0.87203 1.62151 1.12345 1.01852 1.44954 1.22983 0.99195 0.91888 0.97990 1.22677 0.89612 0.92377 0.96749 1.87934 1.72478 1.22686 1.47701 1.22661 0.95273 0.83870 0.99673 1.22822 0.95124 0.97401 0.95659 1.22803 1.00830 0.92692 1.05762 1.22999 1.01384 0.95094 1.04703 0.92905 0.91127 0.97728 0.84058 0.84283 0.83990 0.84077 0.84051 0.94018 0.88927 0.90867 0.88667 0.91410 0.88826 0.89390 0.94103 0.91505 0.89550 0.89404 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 20.82 24.90 -169.99 -4.23 16.59 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -5.81 5.72 56.52 0.32 -5.49 16 7 C -0.46 -11.87 9.32 -34.44 -0.32 -12.19 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 9 C 0.01 0.22 0.99 -155.66 -0.15 0.06 16 10 C 0.10 1.75 5.00 -3.82 -0.02 1.73 16 11 N -0.63 -9.58 6.17 -105.10 -0.65 -10.23 16 12 C 0.10 1.16 2.23 -66.18 -0.15 1.01 16 13 H 0.10 1.25 5.47 -51.93 -0.28 0.97 16 14 C -0.62 -5.86 6.75 38.24 0.26 -5.60 16 15 S 2.39 24.31 6.10 -107.50 -0.66 23.65 16 16 O -0.94 -12.73 18.15 -57.73 -1.05 -13.77 16 17 O -0.94 -12.31 18.15 -57.73 -1.05 -13.36 16 18 C -0.64 -5.56 5.50 37.77 0.21 -5.35 16 19 C 0.11 1.17 2.31 -66.64 -0.15 1.02 16 20 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 21 N -0.49 -6.24 4.73 -225.06 -1.06 -7.31 16 22 C 0.01 0.09 5.01 -3.72 -0.02 0.07 16 23 C 0.06 0.85 7.01 37.21 0.26 1.11 16 24 O -0.39 -5.44 10.83 -35.23 -0.38 -5.82 16 25 C 0.06 0.75 7.01 37.21 0.26 1.01 16 26 C 0.02 0.20 5.39 -3.71 -0.02 0.18 16 27 C -0.18 -3.41 9.96 -26.69 -0.27 -3.68 16 28 C -0.20 -4.08 7.63 -26.69 -0.20 -4.28 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.07 1.39 6.39 -51.93 -0.33 1.06 16 31 H 0.00 0.08 8.10 -51.93 -0.42 -0.34 16 32 H 0.34 4.70 8.38 -39.29 -0.33 4.37 16 33 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.14 1.09 7.90 -51.93 -0.41 0.68 16 35 H 0.14 1.21 5.61 -51.93 -0.29 0.92 16 36 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.46 5.98 -51.93 -0.31 0.15 16 38 H 0.09 1.19 5.96 -51.93 -0.31 0.88 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.41 7.32 -51.93 -0.38 0.03 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 47 H 0.09 1.89 7.31 -51.93 -0.38 1.51 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -34.42 376.85 -10.77 -45.19 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.73 Total: 7.99 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -0.41 Total: -22.94 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.94 Total: -43.21 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -2.48 Total: -32.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.23 Total: 16.59 kcal Atomic # 16 Polarization: 24.31 SS G_CDS: -0.66 Total: 23.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.42 -10.77 -45.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602790447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.110 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds