Wall clock time and date at job start Wed Apr 1 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47326 * 271.02230 * 3 2 1 5 5 H 1.48497 * 109.47381 * 31.02910 * 3 2 1 6 6 H 1.48510 * 109.46935 * 151.02735 * 3 2 1 7 7 C 1.37879 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00494 * 358.54451 * 7 2 1 9 9 C 1.50704 * 119.99641 * 178.54632 * 7 2 1 10 10 C 1.52995 * 115.55067 * 86.53008 * 9 7 2 11 11 N 1.46904 * 109.47048 * 64.75680 * 10 9 7 12 12 C 1.46897 * 110.99748 * 185.15719 * 11 10 9 13 13 H 1.09003 * 110.04945 * 34.84329 * 12 11 10 14 14 C 1.55048 * 110.02994 * 273.43426 * 12 11 10 15 15 S 1.83293 * 102.56685 * 198.27798 * 14 12 11 16 16 O 1.42099 * 109.35332 * 269.81659 * 15 14 12 17 17 O 1.42095 * 109.47343 * 136.64589 * 15 14 12 18 18 C 1.82920 * 97.01570 * 23.21470 * 15 14 12 19 19 C 1.53877 * 110.02251 * 156.24369 * 12 11 10 20 20 H 1.08993 * 109.64894 * 46.62405 * 19 12 11 21 21 N 1.46903 * 109.54088 * 286.25685 * 19 12 11 22 22 C 1.47006 * 111.00306 * 300.10106 * 21 19 12 23 23 C 1.53092 * 109.25940 * 177.60538 * 22 21 19 24 24 O 1.43017 * 109.26112 * 56.84604 * 23 22 21 25 25 C 1.43019 * 113.73727 * 301.33185 * 24 23 22 26 26 C 1.47011 * 110.99901 * 176.45989 * 21 19 12 27 27 C 1.53007 * 117.49454 * 232.20409 * 9 7 2 28 28 C 1.53004 * 117.49754 * 300.86194 * 9 7 2 29 29 H 0.97005 * 119.99634 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47320 * 304.75414 * 10 9 7 31 31 H 1.09003 * 109.47049 * 184.75644 * 10 9 7 32 32 H 1.00899 * 110.99592 * 61.20559 * 11 10 9 33 33 H 1.09002 * 110.78528 * 80.01061 * 14 12 11 34 34 H 1.08996 * 110.94997 * 316.62081 * 14 12 11 35 35 H 1.09003 * 110.31505 * 243.22224 * 18 15 14 36 36 H 1.08996 * 110.40065 * 121.07563 * 18 15 14 37 37 H 1.09006 * 109.50465 * 297.54016 * 22 21 19 38 38 H 1.09000 * 109.50808 * 57.66374 * 22 21 19 39 39 H 1.08999 * 109.50881 * 296.91272 * 23 22 21 40 40 H 1.09006 * 109.50967 * 176.77947 * 23 22 21 41 41 H 1.08998 * 109.50543 * 298.73723 * 25 24 23 42 42 H 1.08996 * 109.54143 * 178.62547 * 25 24 23 43 43 H 1.09004 * 109.51066 * 302.33134 * 26 21 19 44 44 H 1.08996 * 109.50765 * 62.46472 * 26 21 19 45 45 H 1.09000 * 117.49374 * 214.99723 * 27 9 7 46 46 H 1.08996 * 117.49750 * 0.02562 * 27 9 7 47 47 H 1.09004 * 117.49582 * 359.97438 * 28 9 7 48 48 H 1.08997 * 117.50144 * 144.97732 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4750 2.0589 -1.3998 5 1 1.4577 2.6463 0.7217 6 1 3.5575 1.4339 0.6782 7 6 2.0044 -1.1941 -0.0005 8 1 1.4647 -2.1292 0.0228 9 6 3.5111 -1.1944 -0.0336 10 6 4.2011 -1.0941 1.3282 11 7 3.8965 -2.2928 2.1209 12 6 4.4413 -2.1774 3.4802 13 1 4.3863 -1.1425 3.8182 14 6 5.9121 -2.6672 3.5063 15 16 6.1981 -2.9760 5.2902 16 8 6.6940 -1.7919 5.8995 17 8 6.8978 -4.2020 5.4526 18 6 4.4459 -3.2113 5.7599 19 6 3.6570 -3.0880 4.4412 20 1 3.5348 -4.0743 3.9938 21 7 2.3375 -2.4999 4.7083 22 6 2.4677 -1.1691 5.3191 23 6 1.0742 -0.5695 5.5249 24 8 0.2916 -1.4588 6.3262 25 6 0.1438 -2.7641 5.7608 26 6 1.5280 -3.3859 5.5573 27 6 4.1938 -2.0393 -1.1112 28 6 4.1917 -0.5126 -1.2223 29 1 -0.4850 0.8401 0.0004 30 1 3.8409 -0.2098 1.8537 31 1 5.2789 -1.0176 1.1847 32 1 4.2383 -3.1249 1.6638 33 1 6.5841 -1.8935 3.1350 34 1 6.0272 -3.5860 2.9313 35 1 4.1348 -2.4368 6.4610 36 1 4.2993 -4.1985 6.1980 37 1 2.9714 -1.2581 6.2817 38 1 3.0489 -0.5223 4.6620 39 1 0.5911 -0.4307 4.5577 40 1 1.1628 0.3926 6.0297 41 1 -0.3662 -2.6891 4.8004 42 1 -0.4407 -3.3896 6.4354 43 1 1.4231 -4.3573 5.0740 44 1 2.0166 -3.5104 6.5237 45 1 5.1346 -2.5237 -0.8497 46 1 3.5533 -2.5946 -1.7962 47 1 3.5496 -0.0643 -1.9806 48 1 5.1308 0.0076 -1.0341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602790447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:13 Heat of formation + Delta-G solvation = -84.595961 kcal Electronic energy + Delta-G solvation = -30484.693460 eV Core-core repulsion = 26474.526570 eV Total energy + Delta-G solvation = -4010.166890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02740 -39.29034 -38.27128 -38.12797 -37.13371 -35.84721 -34.06156 -32.77954 -32.13133 -30.10963 -28.11221 -27.74050 -26.28672 -25.19039 -24.27314 -23.21091 -22.07133 -20.90352 -20.60029 -19.83195 -18.52384 -17.94178 -17.69962 -17.19805 -17.07356 -16.98655 -16.65900 -16.15292 -15.99924 -15.76520 -15.68091 -15.44113 -15.26566 -14.86220 -14.73517 -14.65031 -14.27463 -13.92879 -13.43505 -13.37527 -13.33330 -13.20796 -13.16028 -12.98733 -12.90446 -12.60185 -12.38887 -12.21003 -12.18186 -12.09513 -11.88230 -11.73020 -11.58321 -11.40290 -11.27899 -10.82758 -10.66308 -10.47958 -10.18510 -9.21478 -8.99953 -8.12930 -6.13863 -1.00004 1.39079 1.42247 1.51958 1.52254 2.46338 2.48101 2.71978 2.89975 2.95561 3.09494 3.23416 3.38164 3.48544 3.61613 3.78243 3.84707 3.91486 4.00394 4.08502 4.15669 4.27678 4.28918 4.35413 4.42128 4.50397 4.54886 4.61031 4.64510 4.69539 4.75264 4.77796 4.84010 4.86133 4.91734 4.93587 4.95964 5.08992 5.16419 5.48542 5.61034 5.84793 5.98517 6.03751 6.18287 6.27334 6.50054 6.74046 6.92324 7.51617 9.03543 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.005083 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.685554 B = 5507.496054 C = 7410.521416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.018 3.982 3 Si 0.931 3.069 4 H -0.281 1.281 5 H -0.307 1.307 6 H -0.230 1.230 7 C -0.443 4.443 8 H 0.030 0.970 9 C -0.015 4.015 10 C 0.107 3.893 11 N -0.645 5.645 12 C 0.092 3.908 13 H 0.096 0.904 14 C -0.610 4.610 15 S 2.411 3.589 16 O -0.974 6.974 17 O -0.970 6.970 18 C -0.623 4.623 19 C 0.108 3.892 20 H 0.123 0.877 21 N -0.518 5.518 22 C 0.008 3.992 23 C 0.062 3.938 24 O -0.400 6.400 25 C 0.057 3.943 26 C 0.020 3.980 27 C -0.162 4.162 28 C -0.205 4.205 29 H 0.257 0.743 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.349 0.651 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.112 0.888 41 H 0.039 0.961 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.699 -6.890 12.214 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.208 1.208 5 H -0.235 1.235 6 H -0.153 1.153 7 C -0.481 4.481 8 H 0.048 0.952 9 C -0.016 4.016 10 C -0.022 4.022 11 N -0.276 5.276 12 C -0.021 4.021 13 H 0.113 0.887 14 C -0.744 4.744 15 S 2.597 3.403 16 O -0.971 6.971 17 O -0.967 6.967 18 C -0.756 4.756 19 C -0.002 4.002 20 H 0.141 0.859 21 N -0.241 5.241 22 C -0.120 4.120 23 C -0.015 4.015 24 O -0.319 6.319 25 C -0.020 4.020 26 C -0.108 4.108 27 C -0.199 4.199 28 C -0.243 4.243 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.164 0.836 36 H 0.185 0.815 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.058 0.942 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.434 -6.494 12.661 17.645 hybrid contribution 0.273 0.830 -0.541 1.028 sum 10.706 -5.664 12.121 17.135 Atomic orbital electron populations 1.70063 1.08219 1.27104 1.54324 1.25655 0.94974 1.02173 0.94976 0.86031 0.80386 0.79595 0.78194 1.20774 1.23463 1.15298 1.20237 0.88924 0.92020 1.46939 0.95181 1.19345 0.92792 1.01657 0.87796 1.21555 0.95295 0.92437 0.92938 1.59865 1.62434 1.04870 1.00399 1.22420 0.86814 1.00338 0.92500 0.88658 1.31362 1.06324 1.13353 1.23331 1.08185 0.78540 0.73892 0.79695 1.93572 1.79050 1.49188 1.75328 1.93566 1.71556 1.45806 1.85782 1.31168 1.21764 1.14202 1.08427 1.22193 0.87727 1.00495 0.89823 0.85929 1.62120 1.13768 1.02265 1.45989 1.22934 0.98192 0.91998 0.98827 1.22666 0.90144 0.93511 0.95174 1.87912 1.72735 1.23513 1.47752 1.22814 0.96535 0.83661 0.98969 1.22845 0.94076 0.97330 0.96500 1.22826 1.01665 0.92037 1.03365 1.23027 1.01942 0.96304 1.03050 0.93390 0.93204 0.94622 0.83038 0.83144 0.81705 0.83621 0.81457 0.92028 0.89569 0.94605 0.87002 0.94229 0.86241 0.88161 0.92182 0.87505 0.90995 0.91598 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.11 13.96 21.45 0.30 -58.81 16 2 C 0.02 1.00 5.47 84.65 0.46 1.46 16 3 Si 0.93 43.40 24.90 68.60 1.71 45.11 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.23 -9.42 5.72 99.48 0.57 -8.85 16 7 C -0.44 -23.62 9.32 25.60 0.24 -23.38 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C -0.01 -0.59 0.99 -52.92 -0.05 -0.65 16 10 C 0.11 3.55 5.00 86.30 0.43 3.99 16 11 N -0.65 -18.28 6.17 -486.44 -3.00 -21.29 16 12 C 0.09 1.95 2.23 45.91 0.10 2.06 16 13 H 0.10 2.16 5.47 -2.39 -0.01 2.15 16 14 C -0.61 -9.16 6.75 72.68 0.49 -8.67 16 15 S 2.41 42.16 6.10 -56.49 -0.34 41.81 16 16 O -0.97 -24.40 18.15 -127.47 -2.31 -26.72 16 17 O -0.97 -22.76 18.15 -127.47 -2.31 -25.07 16 18 C -0.62 -8.70 5.50 72.38 0.40 -8.31 16 19 C 0.11 2.03 2.31 45.61 0.11 2.14 16 20 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 21 N -0.52 -12.51 4.73 -865.96 -4.10 -16.61 16 22 C 0.01 0.20 5.01 86.31 0.43 0.63 16 23 C 0.06 1.71 7.01 72.01 0.50 2.22 16 24 O -0.40 -11.14 10.83 -148.98 -1.61 -12.75 16 25 C 0.06 1.35 7.01 72.02 0.50 1.86 16 26 C 0.02 0.41 5.39 86.32 0.46 0.87 16 27 C -0.16 -5.55 9.96 30.62 0.30 -5.24 16 28 C -0.21 -7.63 7.63 30.62 0.23 -7.40 16 29 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 30 H 0.05 1.85 6.39 -2.39 -0.02 1.84 16 31 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.35 8.57 8.38 -89.69 -0.75 7.82 16 33 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.17 1.76 7.90 -2.39 -0.02 1.75 16 35 H 0.15 2.01 5.61 -2.39 -0.01 2.00 16 36 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.23 5.98 -2.38 -0.01 1.22 16 38 H 0.09 2.17 5.96 -2.39 -0.01 2.16 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.00 7.32 -2.39 -0.02 0.98 16 45 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.07 2.74 7.31 -2.38 -0.02 2.72 16 48 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -78.24 376.85 -6.97 -85.21 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.08 Total: 27.55 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 4.62 Total: -38.43 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -6.80 Total: -96.71 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -6.24 Total: -64.54 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.71 Total: 45.11 kcal Atomic # 16 Polarization: 42.16 SS G_CDS: -0.34 Total: 41.81 kcal Total: -78.24 -6.97 -85.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602790447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.618 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds