Wall clock time and date at job start Wed Apr 1 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48506 * 109.47118 * 275.83150 * 3 2 1 5 5 H 1.48492 * 109.47219 * 35.83312 * 3 2 1 6 6 H 1.48499 * 109.46798 * 155.83662 * 3 2 1 7 7 C 1.37876 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99785 * 344.95961 * 7 2 1 9 9 C 1.50697 * 120.00519 * 164.96259 * 7 2 1 10 10 C 1.53005 * 115.54719 * 324.15825 * 9 7 2 11 11 N 1.46892 * 109.47209 * 280.57682 * 10 9 7 12 12 C 1.46898 * 111.00315 * 185.21483 * 11 10 9 13 13 H 1.09000 * 108.77915 * 27.23245 * 12 11 10 14 14 C 1.54208 * 108.92720 * 268.63236 * 12 11 10 15 15 S 1.83819 * 103.02279 * 214.29854 * 14 12 11 16 16 O 1.42105 * 109.81162 * 147.86995 * 15 14 12 17 17 O 1.42103 * 109.81307 * 282.18732 * 15 14 12 18 18 C 1.83825 * 94.23696 * 35.04713 * 15 14 12 19 19 C 1.52654 * 109.12688 * 145.89946 * 12 11 10 20 20 H 1.09000 * 108.92743 * 241.26729 * 19 12 11 21 21 N 1.46898 * 108.77859 * 359.83390 * 19 12 11 22 22 C 1.47014 * 111.00148 * 198.76746 * 21 19 12 23 23 C 1.53094 * 109.25644 * 177.60609 * 22 21 19 24 24 O 1.43015 * 109.26274 * 56.84336 * 23 22 21 25 25 C 1.43009 * 113.73879 * 301.33298 * 24 23 22 26 26 C 1.47011 * 111.00302 * 75.12332 * 21 19 12 27 27 C 1.53004 * 117.51993 * 109.85419 * 9 7 2 28 28 C 1.52999 * 59.99961 * 107.48581 * 27 9 7 29 29 H 0.97008 * 120.00388 * 4.99382 * 1 2 3 30 30 H 1.09005 * 109.46938 * 160.57547 * 10 9 7 31 31 H 1.08995 * 109.47097 * 40.57871 * 10 9 7 32 32 H 1.00904 * 110.99876 * 61.25832 * 11 10 9 33 33 H 1.08999 * 110.73863 * 95.86387 * 14 12 11 34 34 H 1.08998 * 110.73122 * 332.73345 * 14 12 11 35 35 H 1.09004 * 110.73231 * 83.20697 * 18 15 14 36 36 H 1.09000 * 110.73604 * 206.33095 * 18 15 14 37 37 H 1.09006 * 109.49797 * 297.53563 * 22 21 19 38 38 H 1.08996 * 109.51226 * 57.66960 * 22 21 19 39 39 H 1.09002 * 109.51032 * 296.90888 * 23 22 21 40 40 H 1.08999 * 109.54172 * 176.79939 * 23 22 21 41 41 H 1.09000 * 109.50541 * 298.72976 * 25 24 23 42 42 H 1.09002 * 109.54402 * 178.62166 * 25 24 23 43 43 H 1.09001 * 109.50924 * 302.33268 * 26 21 19 44 44 H 1.08998 * 109.50186 * 62.45755 * 26 21 19 45 45 H 1.08998 * 117.50328 * 214.97092 * 27 9 7 46 46 H 1.09000 * 117.49488 * 359.97438 * 27 9 7 47 47 H 1.09000 * 117.50330 * 252.51760 * 28 27 9 48 48 H 1.09004 * 117.50088 * 107.49024 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3734 2.1176 -1.3929 5 1 1.5136 2.6139 0.8196 6 1 3.6028 1.4077 0.5731 7 6 2.0045 -1.1940 -0.0005 8 1 1.4922 -2.1134 0.2418 9 6 3.4728 -1.2163 -0.3391 10 6 3.9175 -0.2210 -1.4128 11 7 3.5844 -0.7524 -2.7411 12 6 4.1069 0.1183 -3.8026 13 1 4.9832 0.6451 -3.4248 14 6 3.0261 1.1517 -4.1792 15 16 3.2854 1.3833 -5.9842 16 8 2.0441 1.6623 -6.6172 17 8 4.4070 2.2275 -6.2053 18 6 3.7555 -0.3690 -6.2798 19 6 4.5224 -0.7402 -4.9945 20 1 5.5902 -0.6090 -5.1697 21 7 4.2624 -2.1503 -4.6751 22 6 5.0275 -3.0407 -5.5600 23 6 4.7740 -4.4951 -5.1547 24 8 3.3694 -4.7602 -5.2026 25 6 2.5940 -3.9114 -4.3521 26 6 2.8254 -2.4511 -4.7493 27 6 4.4551 -1.5186 0.7942 28 6 4.1893 -2.5672 -0.2878 29 1 -0.4851 0.8369 -0.0731 30 1 4.9944 -0.0677 -1.3423 31 1 3.4046 0.7289 -1.2624 32 1 2.5888 -0.8840 -2.8387 33 1 3.1837 2.0878 -3.6434 34 1 2.0295 0.7578 -3.9799 35 1 2.8686 -0.9925 -6.3938 36 1 4.3997 -0.4534 -7.1550 37 1 4.7093 -2.8896 -6.5916 38 1 6.0906 -2.8178 -5.4700 39 1 5.1411 -4.6599 -4.1417 40 1 5.2938 -5.1614 -5.8431 41 1 2.8977 -4.0592 -3.3157 42 1 1.5369 -4.1548 -4.4598 43 1 2.2810 -1.7978 -4.0674 44 1 2.4721 -2.2906 -5.7678 45 1 5.4182 -1.0087 0.7750 46 1 4.0394 -1.7011 1.7852 47 1 3.5987 -3.4398 -0.0088 48 1 4.9775 -2.7469 -1.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602790452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:16 Heat of formation + Delta-G solvation = -49.512302 kcal Electronic energy + Delta-G solvation = -31197.314183 eV Core-core repulsion = 27188.668635 eV Total energy + Delta-G solvation = -4008.645548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08748 -39.26297 -38.33878 -38.03998 -37.16726 -35.60429 -34.29639 -32.78438 -31.98983 -30.14203 -28.36368 -27.78409 -26.24650 -25.27255 -24.37543 -22.89798 -21.64865 -21.00378 -20.64518 -19.92503 -18.54554 -17.99585 -17.70513 -17.54113 -17.15771 -16.85222 -16.66065 -16.37970 -16.01076 -15.68523 -15.54326 -15.43399 -15.30374 -14.85053 -14.78427 -14.51359 -14.00455 -13.84454 -13.61882 -13.56898 -13.37758 -13.24403 -13.06102 -12.91953 -12.80950 -12.39084 -12.30407 -12.19782 -12.02531 -11.87418 -11.81583 -11.72890 -11.50769 -11.19471 -11.14052 -11.10602 -10.52943 -10.49309 -10.24409 -9.10074 -8.97313 -8.28583 -6.23353 -1.03077 1.21042 1.39154 1.41276 1.47981 2.29485 2.48176 2.72123 2.84067 2.91465 3.09506 3.19999 3.48211 3.53419 3.71598 3.82778 3.83046 3.93608 4.12689 4.17682 4.23241 4.28159 4.36879 4.38867 4.45510 4.56598 4.62915 4.65135 4.68952 4.78828 4.81858 4.90631 4.91554 4.99050 5.02285 5.06211 5.11298 5.21960 5.23946 5.37046 5.65554 5.76584 6.00109 6.13070 6.31482 6.34521 6.41072 6.54124 6.78292 7.34519 8.85240 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.006111 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.649123 B = 4580.705291 C = 6452.563515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.945 3.055 4 H -0.260 1.260 5 H -0.319 1.319 6 H -0.251 1.251 7 C -0.478 4.478 8 H 0.030 0.970 9 C -0.008 4.008 10 C 0.092 3.908 11 N -0.627 5.627 12 C 0.089 3.911 13 H 0.113 0.887 14 C -0.621 4.621 15 S 2.397 3.603 16 O -0.978 6.978 17 O -0.957 6.957 18 C -0.605 4.605 19 C 0.103 3.897 20 H 0.132 0.868 21 N -0.488 5.488 22 C 0.014 3.986 23 C 0.060 3.940 24 O -0.405 6.405 25 C 0.068 3.932 26 C 0.015 3.985 27 C -0.210 4.210 28 C -0.144 4.144 29 H 0.264 0.736 30 H 0.078 0.922 31 H 0.004 0.996 32 H 0.343 0.657 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.170 0.830 37 H 0.049 0.951 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.047 -3.117 -14.277 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.249 1.249 6 H -0.175 1.175 7 C -0.516 4.516 8 H 0.048 0.952 9 C -0.009 4.009 10 C -0.036 4.036 11 N -0.260 5.260 12 C -0.024 4.024 13 H 0.131 0.869 14 C -0.752 4.752 15 S 2.583 3.417 16 O -0.975 6.975 17 O -0.954 6.954 18 C -0.739 4.739 19 C -0.008 4.008 20 H 0.150 0.850 21 N -0.212 5.212 22 C -0.113 4.113 23 C -0.016 4.016 24 O -0.325 6.325 25 C -0.009 4.009 26 C -0.113 4.113 27 C -0.248 4.248 28 C -0.181 4.181 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.021 0.979 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.188 0.812 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.400 -2.856 -14.461 19.921 hybrid contribution -1.344 1.318 0.626 1.984 sum 12.056 -1.538 -13.835 18.415 Atomic orbital electron populations 1.70037 1.08222 1.28028 1.51444 1.25670 0.94944 1.02125 0.94422 0.85932 0.79367 0.79240 0.77953 1.18618 1.24904 1.17513 1.20540 0.92374 0.93023 1.45644 0.95212 1.19168 0.90899 0.96093 0.94719 1.21822 0.98908 0.93727 0.89155 1.60705 1.19946 1.45838 0.99476 1.22066 0.96409 0.89823 0.94130 0.86934 1.31345 1.08885 1.10041 1.24957 1.08743 0.74326 0.79895 0.78770 1.93560 1.44905 1.85040 1.73946 1.93583 1.52417 1.64995 1.84400 1.31130 1.13341 1.21056 1.08324 1.22082 1.01691 0.89874 0.87163 0.85028 1.62162 1.06704 1.01169 1.51118 1.22932 1.00207 0.93226 0.94975 1.22783 0.81307 0.95587 1.01956 1.87925 1.19205 1.59135 1.66187 1.22569 0.95918 0.88520 0.93906 1.22994 0.90128 0.97978 1.00230 1.23168 1.00815 1.06161 0.94673 1.22499 1.02674 0.92079 1.00863 0.92646 0.90343 0.97867 0.83404 0.84542 0.84708 0.82850 0.81232 0.93322 0.87768 0.92968 0.86988 0.93083 0.88580 0.89629 0.92983 0.89168 0.91558 0.92049 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.03 13.95 21.45 0.30 -54.73 16 2 C 0.03 1.43 5.40 84.66 0.46 1.89 16 3 Si 0.94 42.37 24.36 68.60 1.67 44.04 16 4 H -0.26 -10.41 6.80 99.48 0.68 -9.74 16 5 H -0.32 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.25 -10.60 6.84 99.48 0.68 -9.92 16 7 C -0.48 -25.12 9.55 25.60 0.24 -24.88 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 9 C -0.01 -0.32 1.41 -52.93 -0.07 -0.39 16 10 C 0.09 3.23 4.53 86.31 0.39 3.63 16 11 N -0.63 -18.32 4.25 -490.06 -2.08 -20.41 16 12 C 0.09 1.97 2.79 45.21 0.13 2.09 16 13 H 0.11 2.23 7.56 -2.39 -0.02 2.22 16 14 C -0.62 -14.50 6.98 72.39 0.51 -14.00 16 15 S 2.40 51.14 6.08 -56.49 -0.34 50.79 16 16 O -0.98 -28.70 18.17 -127.53 -2.32 -31.02 16 17 O -0.96 -24.97 18.17 -127.53 -2.32 -27.28 16 18 C -0.60 -8.66 6.11 72.39 0.44 -8.21 16 19 C 0.10 1.72 2.63 45.21 0.12 1.84 16 20 H 0.13 1.57 7.87 -2.39 -0.02 1.55 16 21 N -0.49 -9.41 3.80 -868.29 -3.30 -12.72 16 22 C 0.01 0.22 5.44 86.31 0.47 0.69 16 23 C 0.06 1.09 7.01 72.01 0.50 1.59 16 24 O -0.41 -9.79 10.83 -148.98 -1.61 -11.40 16 25 C 0.07 1.68 7.01 72.01 0.50 2.18 16 26 C 0.01 0.33 4.47 86.31 0.39 0.72 16 27 C -0.21 -7.99 9.88 30.60 0.30 -7.69 16 28 C -0.14 -5.28 9.93 30.59 0.30 -4.98 16 29 H 0.26 14.72 8.32 -92.70 -0.77 13.94 16 30 H 0.08 2.41 7.72 -2.38 -0.02 2.39 16 31 H 0.00 0.15 2.04 -2.39 0.00 0.15 16 32 H 0.34 11.37 5.63 -89.69 -0.51 10.86 16 33 H 0.14 3.19 8.11 -2.39 -0.02 3.18 16 34 H 0.13 3.38 7.48 -2.39 -0.02 3.36 16 35 H 0.15 2.20 4.96 -2.38 -0.01 2.18 16 36 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 0.67 7.70 -2.38 -0.02 0.65 16 38 H 0.10 1.19 8.02 -2.39 -0.02 1.18 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.09 2.18 4.92 -2.39 -0.01 2.17 16 44 H 0.05 1.01 5.68 -2.39 -0.01 1.00 16 45 H 0.09 2.98 8.09 -2.39 -0.02 2.96 16 46 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -71.93 370.79 -4.91 -76.84 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.42 Total: 31.42 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 4.68 Total: -45.53 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -5.09 Total: -87.86 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: -6.25 Total: -69.70 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.67 Total: 44.04 kcal Atomic # 16 Polarization: 51.14 SS G_CDS: -0.34 Total: 50.79 kcal Total: -71.93 -4.91 -76.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602790452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.326 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds