Wall clock time and date at job start Wed Apr 1 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48500 * 109.47393 * 239.99879 * 3 2 1 5 5 H 1.48501 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47222 * 119.99945 * 3 2 1 7 7 C 1.37885 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99810 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.46737 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99950 * 170.00053 * 10 9 7 12 12 C 1.53245 * 109.34205 * 187.25255 * 11 10 9 13 13 N 1.47080 * 108.51805 * 306.17169 * 12 11 10 14 14 C 1.34776 * 120.87725 * 231.18245 * 13 12 11 15 15 O 1.21589 * 119.99804 * 184.73968 * 14 13 12 16 16 N 1.34780 * 120.00023 * 4.74696 * 14 13 12 17 17 C 1.39975 * 119.99636 * 182.24391 * 16 14 13 18 18 C 1.39122 * 120.09960 * 338.84883 * 17 16 14 19 19 C 1.38216 * 120.11419 * 179.97438 * 18 17 16 20 20 C 1.38027 * 120.40398 * 0.02702 * 19 18 17 21 21 C 1.39617 * 119.97455 * 359.97438 * 20 19 18 22 22 C 1.38180 * 120.09379 * 158.85298 * 17 16 14 23 23 C 1.50814 * 133.25854 * 359.97438 * 22 17 16 24 24 N 1.46730 * 106.24761 * 180.02562 * 23 22 17 25 25 C 1.34425 * 108.74045 * 0.02562 * 24 23 22 26 26 O 1.21551 * 124.85804 * 179.97438 * 25 24 23 27 27 C 1.47074 * 118.23904 * 51.45653 * 13 12 11 28 28 C 1.46902 * 111.00394 * 294.30071 * 10 9 7 29 29 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46953 * 59.99955 * 9 7 2 31 31 H 1.08994 * 109.47038 * 299.99955 * 9 7 2 32 32 H 1.08999 * 109.49518 * 67.29148 * 11 10 9 33 33 H 1.09003 * 109.49410 * 307.21413 * 11 10 9 34 34 H 1.08993 * 109.62983 * 186.45949 * 12 11 10 35 35 H 1.08996 * 109.62779 * 65.87854 * 12 11 10 36 36 H 0.96995 * 119.99940 * 2.23872 * 16 14 13 37 37 H 1.08000 * 119.94374 * 359.97438 * 18 17 16 38 38 H 1.07994 * 119.79804 * 180.02562 * 19 18 17 39 39 H 1.07996 * 120.00846 * 180.02562 * 20 19 18 40 40 H 1.08998 * 110.09647 * 60.85167 * 23 22 17 41 41 H 1.09000 * 110.09743 * 299.24304 * 23 22 17 42 42 H 0.97001 * 125.63188 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.63081 * 68.25192 * 27 13 12 44 44 H 1.09008 * 109.62670 * 188.83020 * 27 13 12 45 45 H 1.09001 * 109.48938 * 292.70959 * 28 10 9 46 46 H 1.08997 * 109.49200 * 52.75935 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6157 -0.0015 11 6 1.5209 -4.8936 0.2356 12 6 2.5633 -6.0034 0.4087 13 7 3.4620 -5.9859 -0.7555 14 6 3.7129 -7.1117 -1.4527 15 8 4.5240 -7.0979 -2.3584 16 7 3.0645 -8.2528 -1.1460 17 6 3.3591 -9.4329 -1.8388 18 6 3.9594 -9.3747 -3.0925 19 6 4.2509 -10.5397 -3.7766 20 6 3.9494 -11.7682 -3.2242 21 6 3.3468 -11.8387 -1.9667 22 6 3.0543 -10.6591 -1.2795 23 6 2.4192 -11.0710 0.0250 24 7 2.3785 -12.5377 0.0167 25 6 2.9150 -12.9782 -1.1345 26 8 3.0283 -14.1478 -1.4453 27 6 4.0845 -4.7085 -1.1349 28 6 2.9776 -3.6486 -1.2508 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6240 -2.5575 0.8880 32 1 0.8799 -5.1261 -0.6148 33 1 0.9150 -4.8196 1.1387 34 1 2.0627 -6.9696 0.4703 35 1 3.1383 -5.8272 1.3177 36 1 2.3939 -8.2563 -0.4452 37 1 4.1981 -8.4174 -3.5319 38 1 4.7173 -10.4886 -4.7493 39 1 4.1803 -12.6745 -3.7642 40 1 1.4084 -10.6688 0.0928 41 1 3.0207 -10.7174 0.8624 42 1 2.0237 -13.0971 0.7252 43 1 4.8029 -4.4101 -0.3713 44 1 4.5901 -4.8183 -2.0944 45 1 2.3164 -3.8984 -2.0805 46 1 3.4278 -2.6715 -1.4259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603011770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:57 Heat of formation + Delta-G solvation = 9.595755 kcal Electronic energy + Delta-G solvation = -29526.099280 eV Core-core repulsion = 25416.865650 eV Total energy + Delta-G solvation = -4109.233631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65583 -40.62453 -38.62146 -37.61367 -36.20330 -35.14897 -34.57852 -32.50670 -31.10676 -30.91838 -29.99189 -28.18145 -26.99866 -25.66043 -24.40112 -23.36690 -22.47461 -22.17747 -21.37141 -20.23841 -19.55929 -18.45677 -17.62026 -17.50684 -16.46087 -16.27218 -16.22095 -16.05178 -15.74050 -15.22554 -14.78661 -14.68218 -14.59057 -14.14265 -14.09797 -13.95378 -13.77337 -13.68934 -13.60845 -13.37363 -12.77315 -12.54066 -12.29286 -12.07821 -11.70772 -11.39550 -11.30153 -10.94576 -10.91181 -10.86145 -10.69653 -10.62413 -10.42669 -9.97529 -9.89794 -9.76033 -9.38748 -9.17298 -8.77785 -8.53582 -8.24989 -7.46090 -6.13172 -4.15467 0.50163 0.93907 2.29284 2.48458 2.76528 2.95518 3.27223 3.31994 3.34237 3.48926 3.57782 3.72155 4.01085 4.31733 4.56394 4.63338 4.77623 4.82970 4.97306 4.98338 5.09420 5.13605 5.19248 5.23063 5.26418 5.43491 5.47896 5.65314 5.72033 5.76612 5.84202 5.86838 6.03256 6.07955 6.16341 6.28554 6.34835 6.41137 6.49859 6.52738 6.67295 6.73892 7.10596 7.17422 7.60381 7.65878 7.82702 7.90026 8.01593 8.26746 8.37437 8.91312 9.49487 10.97518 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026756 B = 0.002060 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.246489 B =13585.690981 C =14276.855022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.535 5.535 11 C 0.039 3.961 12 C 0.115 3.885 13 N -0.617 5.617 14 C 0.708 3.292 15 O -0.574 6.574 16 N -0.684 5.684 17 C 0.196 3.804 18 C -0.109 4.109 19 C -0.104 4.104 20 C -0.070 4.070 21 C -0.139 4.139 22 C -0.133 4.133 23 C 0.147 3.853 24 N -0.723 5.723 25 C 0.564 3.436 26 O -0.528 6.528 27 C 0.132 3.868 28 C 0.049 3.951 29 H 0.263 0.737 30 H -0.008 1.008 31 H 0.032 0.968 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.407 0.593 37 H 0.174 0.826 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.425 0.575 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.026 0.974 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.431 -20.892 -0.491 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.008 4.008 13 N -0.352 5.352 14 C 0.410 3.590 15 O -0.453 6.453 16 N -0.331 5.331 17 C 0.099 3.901 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.090 4.090 21 C -0.143 4.143 22 C -0.138 4.138 23 C 0.022 3.978 24 N -0.380 5.380 25 C 0.352 3.648 26 O -0.406 6.406 27 C 0.009 3.991 28 C -0.080 4.080 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.245 0.755 37 H 0.191 0.809 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.266 0.734 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.044 0.956 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.256 -21.123 -0.911 21.787 hybrid contribution -0.897 0.680 0.240 1.151 sum 4.359 -20.444 -0.671 20.914 Atomic orbital electron populations 1.69936 1.06106 1.27069 1.50555 1.24993 0.94879 0.99411 0.95253 0.86540 0.79433 0.82607 0.78717 1.20195 1.21363 1.20113 1.21084 0.93464 0.89816 1.50686 0.91794 1.19720 0.89946 0.87134 0.96213 1.62094 1.27889 1.02401 1.33606 1.22394 0.94614 0.90924 1.01094 1.21862 0.91978 0.98250 0.88730 1.47504 1.48991 1.07865 1.30888 1.15791 0.80907 0.80021 0.82267 1.90768 1.38063 1.83723 1.32727 1.42821 1.42655 1.07176 1.40497 1.16728 0.99050 0.82568 0.91722 1.22232 0.97011 1.01694 0.91991 1.21133 0.99573 0.91201 1.00336 1.20835 0.96492 0.98556 0.93147 1.20045 1.04268 0.93328 0.96621 1.19917 1.04241 0.92417 0.97197 1.20328 1.01398 0.80638 0.95421 1.45746 1.63618 1.07753 1.20849 1.18287 0.76973 0.87873 0.81655 1.90814 1.56252 1.18796 1.74690 1.21945 0.95520 0.79986 1.01621 1.22473 0.95144 0.99267 0.91088 0.92760 0.99065 0.95032 0.95401 0.89863 0.91418 0.90025 0.75471 0.80883 0.84573 0.85086 0.88854 0.88725 0.73355 0.90672 0.89044 0.95577 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.51 -13.41 8.41 -34.44 -0.29 -13.70 16 8 H 0.06 1.64 7.13 -52.49 -0.37 1.27 16 9 C 0.19 4.65 4.72 -4.98 -0.02 4.62 16 10 N -0.53 -10.07 4.62 -235.47 -1.09 -11.16 16 11 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 12 C 0.12 1.25 6.60 -3.60 -0.02 1.23 16 13 N -0.62 -7.90 3.00 -177.91 -0.53 -8.43 16 14 C 0.71 9.13 8.21 -86.92 -0.71 8.42 16 15 O -0.57 -8.89 12.58 5.29 0.07 -8.82 16 16 N -0.68 -6.65 5.29 -14.32 -0.08 -6.72 16 17 C 0.20 2.01 6.49 -83.83 -0.54 1.46 16 18 C -0.11 -1.20 8.85 -39.26 -0.35 -1.55 16 19 C -0.10 -0.96 10.01 -39.67 -0.40 -1.36 16 20 C -0.07 -0.68 10.10 -39.14 -0.40 -1.08 16 21 C -0.14 -1.45 6.26 -105.06 -0.66 -2.11 16 22 C -0.13 -1.19 6.27 -104.08 -0.65 -1.84 16 23 C 0.15 0.84 7.62 -5.01 -0.04 0.81 16 24 N -0.72 -5.19 6.41 -62.40 -0.40 -5.59 16 25 C 0.56 6.27 8.35 -12.61 -0.11 6.17 16 26 O -0.53 -7.72 18.04 5.32 0.10 -7.62 16 27 C 0.13 1.88 6.61 -3.37 -0.02 1.86 16 28 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 31 H 0.03 0.80 7.97 -51.93 -0.41 0.39 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 34 H 0.07 0.48 5.62 -51.93 -0.29 0.19 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.41 2.82 6.13 -40.82 -0.25 2.57 16 37 H 0.17 2.21 5.26 -52.55 -0.28 1.93 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.43 2.07 8.96 -40.82 -0.37 1.70 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.30 7.09 -51.92 -0.37 0.93 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 1.87 6.67 -51.93 -0.35 1.53 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -33.40 373.36 -10.98 -44.38 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.04 Total: 1.71 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -4.35 Total: 5.74 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -1.36 Total: -56.67 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.16 Total: -16.44 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.40 -10.98 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603011770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.973 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds