Wall clock time and date at job start Wed Apr 1 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00184 * 2 1 4 4 C 1.53003 * 110.75172 * 301.90821 * 3 2 1 5 5 N 1.46496 * 109.47332 * 71.14833 * 4 3 2 6 6 C 1.34771 * 120.00357 * 179.01909 * 5 4 3 7 7 O 1.21662 * 119.99992 * 4.68720 * 6 5 4 8 8 C 1.46894 * 120.00428 * 184.68929 * 6 5 4 9 9 C 1.36116 * 125.43614 * 173.87221 * 8 6 5 10 10 C 1.41706 * 107.74457 * 179.90210 * 9 8 6 11 11 C 1.40029 * 133.34895 * 180.09142 * 10 9 8 12 12 C 1.36576 * 119.82934 * 180.28221 * 11 10 9 13 13 C 1.38855 * 120.59946 * 0.02562 * 12 11 10 14 14 C 1.37848 * 120.63568 * 359.97438 * 13 12 11 15 15 C 1.39083 * 119.81288 * 0.03737 * 14 13 12 16 16 N 1.37836 * 133.16392 * 179.97438 * 15 14 13 17 17 C 1.36888 * 125.61885 * 359.96048 * 16 15 14 18 18 H 1.08000 * 120.00456 * 133.70349 * 17 16 15 19 19 C 1.39012 * 120.00099 * 313.69715 * 17 16 15 20 20 N 1.31355 * 119.99789 * 2.72325 * 19 17 16 21 21 Si 1.86798 * 120.00317 * 182.72237 * 19 17 16 22 22 H 1.48498 * 109.47098 * 95.11420 * 21 19 17 23 23 H 1.48496 * 109.47369 * 215.11592 * 21 19 17 24 24 H 1.48506 * 109.46890 * 335.11642 * 21 19 17 25 25 C 1.55299 * 111.02513 * 178.31212 * 3 2 1 26 26 C 1.54953 * 100.94260 * 275.86469 * 25 3 2 27 27 O 1.43644 * 105.13529 * 323.55595 * 26 25 3 28 28 C 1.43245 * 109.97118 * 24.42351 * 27 26 25 29 29 H 1.09002 * 109.47391 * 186.56848 * 1 2 3 30 30 H 1.08998 * 109.47493 * 306.56676 * 1 2 3 31 31 H 1.09005 * 109.47277 * 66.57083 * 1 2 3 32 32 H 1.09001 * 109.47268 * 311.14548 * 4 3 2 33 33 H 1.09000 * 109.47214 * 191.14697 * 4 3 2 34 34 H 0.97006 * 120.00050 * 359.01639 * 5 4 3 35 35 H 1.07998 * 126.13068 * 0.02562 * 9 8 6 36 36 H 1.08000 * 120.08226 * 0.31143 * 11 10 9 37 37 H 1.07991 * 119.70055 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.68362 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.09451 * 180.02562 * 14 13 12 40 40 H 0.96996 * 119.99699 * 184.99989 * 20 19 17 41 41 H 1.08998 * 111.12587 * 33.78176 * 25 3 2 42 42 H 1.09000 * 111.13071 * 157.95002 * 25 3 2 43 43 H 1.08997 * 110.31320 * 204.63921 * 26 25 3 44 44 H 1.08998 * 110.38934 * 82.50850 * 26 25 3 45 45 H 1.08996 * 109.83018 * 238.77362 * 28 27 26 46 46 H 1.09000 * 109.82638 * 117.80112 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5398 2.1083 -1.2146 5 7 0.1300 2.4686 -1.0456 6 6 -0.4966 3.1993 -1.9889 7 8 0.0824 3.4873 -3.0195 8 6 -1.8785 3.6481 -1.7729 9 6 -2.5737 4.4844 -2.5914 10 6 -3.8629 4.6640 -2.0312 11 6 -4.9876 5.4001 -2.4237 12 6 -6.1152 5.3803 -1.6534 13 6 -6.1579 4.6363 -0.4818 14 6 -5.0635 3.9037 -0.0747 15 6 -3.9038 3.9084 -0.8424 16 7 -2.6778 3.2941 -0.7024 17 6 -2.3124 2.4692 0.3271 18 1 -1.8126 1.5346 0.1189 19 6 -2.5844 2.8343 1.6405 20 7 -3.2395 3.9449 1.8912 21 14 -2.0185 1.7456 3.0490 22 1 -0.7129 2.2355 3.5595 23 1 -3.0239 1.7864 4.1410 24 1 -1.8687 0.3493 2.5659 25 6 3.5605 1.2250 0.0427 26 6 3.8053 1.0727 1.5652 27 8 2.8049 1.8927 2.1898 28 6 1.6845 2.0518 1.3115 29 1 -0.3634 -1.0209 0.1176 30 1 -0.3634 0.6122 0.8253 31 1 -0.3634 0.4086 -0.9430 32 1 1.6554 1.5056 -2.1154 33 1 2.1382 3.0148 -1.3048 34 1 -0.3527 2.1813 -0.2548 35 1 -2.2090 4.9297 -3.5053 36 1 -4.9634 5.9816 -3.3335 37 1 -6.9815 5.9484 -1.9584 38 1 -7.0574 4.6310 0.1158 39 1 -5.1065 3.3278 0.8379 40 1 -3.3662 4.2369 2.8074 41 1 3.9239 0.3540 -0.5027 42 1 4.0121 2.1411 -0.3380 43 1 4.8023 1.4280 1.8255 44 1 3.6843 0.0324 1.8670 45 1 1.5241 3.1099 1.1049 46 1 0.7925 1.6237 1.7689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613126685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:18 Heat of formation + Delta-G solvation = -45.342939 kcal Electronic energy + Delta-G solvation = -31874.644117 eV Core-core repulsion = 27730.735415 eV Total energy + Delta-G solvation = -4143.908702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82478 -40.24239 -38.47104 -37.07048 -35.97978 -34.32864 -33.65071 -31.96916 -30.77539 -29.55415 -28.94715 -28.10838 -26.89458 -25.92975 -25.02454 -23.02383 -22.25424 -21.06904 -20.74594 -20.08604 -19.26547 -18.22025 -17.49347 -16.80418 -16.12121 -15.80526 -15.64581 -15.52234 -15.07325 -14.96345 -14.71321 -14.56309 -14.50317 -14.03039 -13.79329 -13.43527 -13.12605 -13.04684 -12.94596 -12.68753 -12.47451 -12.04066 -11.98236 -11.88308 -11.80710 -11.73403 -11.52714 -11.35105 -11.20646 -10.91851 -10.78939 -10.69796 -10.24412 -9.81757 -9.65668 -9.58420 -9.49364 -9.36102 -8.70013 -8.61898 -7.28346 -6.93916 -6.65700 -4.85713 1.77989 2.69461 2.78807 2.82761 2.88423 3.06437 3.45720 3.54744 3.57153 3.76681 4.14515 4.28586 4.45646 4.46247 4.59284 4.70180 5.01640 5.03496 5.10123 5.30211 5.41667 5.46697 5.51082 5.56870 5.64263 5.68365 5.76893 5.78783 5.81683 5.89606 5.92376 5.94836 6.12521 6.38171 6.55011 6.64500 6.67917 6.77102 6.86384 6.89618 7.03688 7.05836 7.10126 7.37395 7.53578 7.61739 7.84211 7.87779 8.02191 8.22160 8.54475 8.81124 9.16128 9.99585 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004537 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.347648 B = 6170.319464 C = 7570.469649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.366 6.366 3 C 0.071 3.929 4 C 0.102 3.898 5 N -0.738 5.738 6 C 0.596 3.404 7 O -0.553 6.553 8 C -0.022 4.022 9 C -0.159 4.159 10 C -0.136 4.136 11 C -0.088 4.088 12 C -0.158 4.158 13 C -0.149 4.149 14 C -0.047 4.047 15 C 0.111 3.889 16 N -0.265 5.265 17 C -0.384 4.384 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.812 5.812 21 Si 0.899 3.101 22 H -0.258 1.258 23 H -0.267 1.267 24 H -0.256 1.256 25 C -0.136 4.136 26 C 0.052 3.948 27 O -0.377 6.377 28 C 0.024 3.976 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.417 0.583 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.285 0.715 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -4.954 0.607 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.285 6.285 3 C 0.030 3.970 4 C -0.022 4.022 5 N -0.401 5.401 6 C 0.386 3.614 7 O -0.432 6.432 8 C -0.137 4.137 9 C -0.187 4.187 10 C -0.140 4.140 11 C -0.107 4.107 12 C -0.178 4.178 13 C -0.170 4.170 14 C -0.067 4.067 15 C -0.004 4.004 16 N 0.070 4.930 17 C -0.511 4.511 18 H 0.124 0.876 19 C -0.152 4.152 20 N -0.440 5.440 21 Si 0.722 3.278 22 H -0.183 1.183 23 H -0.192 1.192 24 H -0.180 1.180 25 C -0.174 4.174 26 C -0.024 4.024 27 O -0.296 6.296 28 C -0.053 4.053 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.265 0.735 35 H 0.151 0.849 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.996 -4.981 0.595 8.609 hybrid contribution -0.308 -0.315 1.057 1.145 sum 6.689 -5.295 1.652 8.690 Atomic orbital electron populations 1.23441 0.80394 1.03561 1.01804 1.87916 1.20315 1.25382 1.94866 1.23280 0.94874 0.84480 0.94342 1.21778 0.83719 0.99349 0.97355 1.47097 1.11456 1.55712 1.25870 1.17305 0.84771 0.76821 0.82496 1.90722 1.67211 1.58099 1.27182 1.20050 0.91836 1.06353 0.95442 1.20409 0.93451 1.03575 1.01279 1.18051 0.94994 1.03857 0.97126 1.20048 0.92246 0.99370 0.99072 1.20284 0.97668 1.02879 0.96926 1.20606 0.97882 1.00725 0.97798 1.20184 0.89947 0.98984 0.97551 1.18297 0.87081 0.99625 0.95349 1.39885 1.06490 1.31687 1.14942 1.19650 1.44189 1.02780 0.84489 0.87646 1.25656 0.94171 0.96331 0.99031 1.69929 1.31518 1.19851 1.22722 0.86352 0.80170 0.80511 0.80764 1.18286 1.19165 1.17965 1.23244 0.91561 1.04602 0.98022 1.23396 0.92509 0.95729 0.90802 1.88423 1.28591 1.71252 1.41360 1.23885 0.90335 1.01417 0.89635 0.88958 0.92949 0.91799 0.90197 0.90252 0.73534 0.84931 0.87768 0.87940 0.87703 0.86134 0.90367 0.88371 0.88421 0.89438 0.91657 0.89449 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.35 101.05 0.84 0.90 16 2 O -0.37 -5.48 10.47 -35.23 -0.37 -5.85 16 3 C 0.07 1.00 0.86 -88.68 -0.08 0.93 16 4 C 0.10 1.59 4.51 -4.04 -0.02 1.58 16 5 N -0.74 -13.93 3.50 -61.55 -0.22 -14.14 16 6 C 0.60 13.09 7.77 -12.76 -0.10 12.99 16 7 O -0.55 -12.81 16.85 5.22 0.09 -12.73 16 8 C -0.02 -0.53 6.77 -82.25 -0.56 -1.09 16 9 C -0.16 -3.65 10.55 -39.02 -0.41 -4.06 16 10 C -0.14 -3.13 6.16 -106.89 -0.66 -3.79 16 11 C -0.09 -1.78 10.06 -39.51 -0.40 -2.18 16 12 C -0.16 -3.00 9.97 -39.95 -0.40 -3.40 16 13 C -0.15 -2.98 10.02 -39.50 -0.40 -3.37 16 14 C -0.05 -1.07 8.46 -39.41 -0.33 -1.40 16 15 C 0.11 2.70 6.04 -83.84 -0.51 2.19 16 16 N -0.27 -6.41 2.83 -56.08 -0.16 -6.57 16 17 C -0.38 -8.75 7.68 -15.01 -0.12 -8.87 16 18 H 0.11 2.22 3.77 -52.49 -0.20 2.02 16 19 C 0.06 1.40 5.11 -17.47 -0.09 1.31 16 20 N -0.81 -19.31 10.10 55.50 0.56 -18.75 16 21 Si 0.90 16.91 27.24 -169.99 -4.63 12.28 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.26 -4.51 6.96 56.52 0.39 -4.12 16 25 C -0.14 -1.47 6.35 -24.48 -0.16 -1.63 16 26 C 0.05 0.59 7.78 38.19 0.30 0.89 16 27 O -0.38 -5.83 11.36 -35.23 -0.40 -6.23 16 28 C 0.02 0.38 6.00 37.88 0.23 0.61 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.86 2.81 -51.93 -0.15 0.71 16 31 H 0.06 1.04 5.77 -51.93 -0.30 0.74 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.18 7.92 -51.93 -0.41 0.76 16 34 H 0.42 7.94 1.70 -40.82 -0.07 7.87 16 35 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 36 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.12 2.80 6.54 -52.49 -0.34 2.46 16 40 H 0.29 6.35 8.31 -40.82 -0.34 6.01 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 46 H 0.08 1.29 5.14 -51.93 -0.27 1.03 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -27.92 356.45 -8.09 -36.01 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -5.49 Total: 18.97 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.84 Total: -8.38 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.19 Total: -39.46 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.68 Total: -24.80 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -4.63 Total: 12.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.92 -8.09 -36.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613126685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.328 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds