Wall clock time and date at job start Wed Apr 1 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00184 * 2 1 4 4 C 1.53003 * 110.75172 * 301.90821 * 3 2 1 5 5 N 1.46496 * 109.47332 * 71.14833 * 4 3 2 6 6 C 1.34771 * 120.00357 * 179.01909 * 5 4 3 7 7 O 1.21662 * 119.99992 * 4.68720 * 6 5 4 8 8 C 1.46894 * 120.00428 * 184.68929 * 6 5 4 9 9 C 1.36116 * 125.43614 * 173.87221 * 8 6 5 10 10 C 1.41706 * 107.74457 * 179.90210 * 9 8 6 11 11 C 1.40029 * 133.34895 * 180.09142 * 10 9 8 12 12 C 1.36576 * 119.82934 * 180.28221 * 11 10 9 13 13 C 1.38855 * 120.59946 * 0.02562 * 12 11 10 14 14 C 1.37848 * 120.63568 * 359.97438 * 13 12 11 15 15 C 1.39083 * 119.81288 * 0.03737 * 14 13 12 16 16 N 1.37836 * 133.16392 * 179.97438 * 15 14 13 17 17 C 1.36888 * 125.61885 * 359.96048 * 16 15 14 18 18 H 1.08000 * 120.00456 * 133.70349 * 17 16 15 19 19 C 1.39012 * 120.00099 * 313.69715 * 17 16 15 20 20 N 1.31355 * 119.99789 * 2.72325 * 19 17 16 21 21 Si 1.86798 * 120.00317 * 182.72237 * 19 17 16 22 22 H 1.48498 * 109.47098 * 95.11420 * 21 19 17 23 23 H 1.48496 * 109.47369 * 215.11592 * 21 19 17 24 24 H 1.48506 * 109.46890 * 335.11642 * 21 19 17 25 25 C 1.55299 * 111.02513 * 178.31212 * 3 2 1 26 26 C 1.54953 * 100.94260 * 275.86469 * 25 3 2 27 27 O 1.43644 * 105.13529 * 323.55595 * 26 25 3 28 28 C 1.43245 * 109.97118 * 24.42351 * 27 26 25 29 29 H 1.09002 * 109.47391 * 186.56848 * 1 2 3 30 30 H 1.08998 * 109.47493 * 306.56676 * 1 2 3 31 31 H 1.09005 * 109.47277 * 66.57083 * 1 2 3 32 32 H 1.09001 * 109.47268 * 311.14548 * 4 3 2 33 33 H 1.09000 * 109.47214 * 191.14697 * 4 3 2 34 34 H 0.97006 * 120.00050 * 359.01639 * 5 4 3 35 35 H 1.07998 * 126.13068 * 0.02562 * 9 8 6 36 36 H 1.08000 * 120.08226 * 0.31143 * 11 10 9 37 37 H 1.07991 * 119.70055 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.68362 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.09451 * 180.02562 * 14 13 12 40 40 H 0.96996 * 119.99699 * 184.99989 * 20 19 17 41 41 H 1.08998 * 111.12587 * 33.78176 * 25 3 2 42 42 H 1.09000 * 111.13071 * 157.95002 * 25 3 2 43 43 H 1.08997 * 110.31320 * 204.63921 * 26 25 3 44 44 H 1.08998 * 110.38934 * 82.50850 * 26 25 3 45 45 H 1.08996 * 109.83018 * 238.77362 * 28 27 26 46 46 H 1.09000 * 109.82638 * 117.80112 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5398 2.1083 -1.2146 5 7 0.1300 2.4686 -1.0456 6 6 -0.4966 3.1993 -1.9889 7 8 0.0824 3.4873 -3.0195 8 6 -1.8785 3.6481 -1.7729 9 6 -2.5737 4.4844 -2.5914 10 6 -3.8629 4.6640 -2.0312 11 6 -4.9876 5.4001 -2.4237 12 6 -6.1152 5.3803 -1.6534 13 6 -6.1579 4.6363 -0.4818 14 6 -5.0635 3.9037 -0.0747 15 6 -3.9038 3.9084 -0.8424 16 7 -2.6778 3.2941 -0.7024 17 6 -2.3124 2.4692 0.3271 18 1 -1.8126 1.5346 0.1189 19 6 -2.5844 2.8343 1.6405 20 7 -3.2395 3.9449 1.8912 21 14 -2.0185 1.7456 3.0490 22 1 -0.7129 2.2355 3.5595 23 1 -3.0239 1.7864 4.1410 24 1 -1.8687 0.3493 2.5659 25 6 3.5605 1.2250 0.0427 26 6 3.8053 1.0727 1.5652 27 8 2.8049 1.8927 2.1898 28 6 1.6845 2.0518 1.3115 29 1 -0.3634 -1.0209 0.1176 30 1 -0.3634 0.6122 0.8253 31 1 -0.3634 0.4086 -0.9430 32 1 1.6554 1.5056 -2.1154 33 1 2.1382 3.0148 -1.3048 34 1 -0.3527 2.1813 -0.2548 35 1 -2.2090 4.9297 -3.5053 36 1 -4.9634 5.9816 -3.3335 37 1 -6.9815 5.9484 -1.9584 38 1 -7.0574 4.6310 0.1158 39 1 -5.1065 3.3278 0.8379 40 1 -3.3662 4.2369 2.8074 41 1 3.9239 0.3540 -0.5027 42 1 4.0121 2.1411 -0.3380 43 1 4.8023 1.4280 1.8255 44 1 3.6843 0.0324 1.8670 45 1 1.5241 3.1099 1.1049 46 1 0.7925 1.6237 1.7689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613126685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:17 Heat of formation + Delta-G solvation = -61.916176 kcal Electronic energy + Delta-G solvation = -31875.362787 eV Core-core repulsion = 27730.735415 eV Total energy + Delta-G solvation = -4144.627372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37911 -41.57666 -40.03824 -38.27267 -37.61863 -35.85601 -35.30163 -33.12531 -32.47032 -30.90962 -30.42304 -29.66027 -28.16213 -27.30458 -26.69737 -24.46271 -23.36904 -22.74015 -22.01836 -21.71467 -20.88351 -19.85706 -18.68509 -18.29843 -17.51811 -17.33656 -16.98453 -16.84539 -16.56914 -16.36538 -16.13742 -16.01264 -15.86689 -15.34784 -15.29488 -14.95916 -14.77210 -14.58631 -14.31352 -14.05791 -13.86663 -13.61629 -13.48000 -13.32597 -13.08295 -12.95476 -12.87332 -12.67973 -12.34567 -12.27833 -12.19173 -12.14006 -11.85952 -11.45273 -11.20724 -11.08412 -10.82897 -10.66719 -10.39001 -10.15170 -8.98604 -8.65432 -8.35217 -6.61652 0.09081 1.09696 1.24089 1.29594 1.35029 1.36987 1.95287 2.07852 2.36592 2.42835 2.69997 2.75507 2.79161 3.14649 3.36268 3.44961 3.57943 3.92716 4.01943 4.10208 4.16580 4.23309 4.26062 4.34312 4.37399 4.44459 4.52368 4.54833 4.55243 4.65314 4.74939 4.78618 4.84387 4.85938 4.96456 4.98904 5.01461 5.19338 5.28761 5.36777 5.45680 5.68417 5.82273 5.85510 5.90755 5.98032 6.19265 6.20485 6.39261 6.53572 6.83943 7.13372 7.43281 8.29966 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004537 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.347648 B = 6170.319464 C = 7570.469649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.364 6.364 3 C 0.071 3.929 4 C 0.100 3.900 5 N -0.730 5.730 6 C 0.593 3.407 7 O -0.573 6.573 8 C -0.049 4.049 9 C -0.171 4.171 10 C -0.157 4.157 11 C -0.094 4.094 12 C -0.152 4.152 13 C -0.140 4.140 14 C -0.075 4.075 15 C 0.081 3.919 16 N -0.278 5.278 17 C -0.397 4.397 18 H 0.118 0.882 19 C 0.032 3.968 20 N -0.842 5.842 21 Si 0.948 3.052 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.237 1.237 25 C -0.127 4.127 26 C 0.044 3.956 27 O -0.397 6.397 28 C 0.024 3.976 29 H 0.115 0.885 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.286 0.714 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.869 -5.510 0.624 8.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.282 6.282 3 C 0.031 3.969 4 C -0.024 4.024 5 N -0.392 5.392 6 C 0.382 3.618 7 O -0.454 6.454 8 C -0.163 4.163 9 C -0.199 4.199 10 C -0.161 4.161 11 C -0.113 4.113 12 C -0.171 4.171 13 C -0.160 4.160 14 C -0.095 4.095 15 C -0.033 4.033 16 N 0.057 4.943 17 C -0.524 4.524 18 H 0.135 0.865 19 C -0.180 4.180 20 N -0.471 5.471 21 Si 0.768 3.232 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.160 1.160 25 C -0.164 4.164 26 C -0.031 4.031 27 O -0.316 6.316 28 C -0.053 4.053 29 H 0.133 0.867 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.264 0.736 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.454 -5.562 0.614 9.321 hybrid contribution -0.501 -0.101 1.041 1.159 sum 6.953 -5.664 1.655 9.120 Atomic orbital electron populations 1.23423 0.80791 1.04604 1.00420 1.87925 1.19925 1.25714 1.94682 1.23381 0.97176 0.83763 0.92587 1.22012 0.81824 1.00111 0.98436 1.47084 1.12794 1.54378 1.24900 1.17239 0.84484 0.77228 0.82839 1.90687 1.67507 1.59263 1.27946 1.20443 0.92858 1.07163 0.95824 1.20650 0.93802 1.03785 1.01697 1.18428 0.95961 1.04628 0.97085 1.20456 0.91612 0.98912 1.00286 1.20738 0.98518 1.02018 0.95796 1.21032 0.97830 0.98992 0.98184 1.20244 0.90841 1.00776 0.97592 1.18755 0.87658 1.00525 0.96409 1.40097 1.06768 1.32099 1.15318 1.20045 1.44342 1.03243 0.84724 0.86544 1.26356 0.93804 0.97152 1.00680 1.70032 1.32621 1.21398 1.23088 0.85612 0.79389 0.80108 0.78067 1.18574 1.19038 1.15952 1.23346 0.88491 1.06580 0.98008 1.23693 0.92792 0.95665 0.90945 1.88403 1.29083 1.72110 1.42045 1.23767 0.90354 1.00674 0.90550 0.86714 0.94222 0.93288 0.89660 0.89368 0.73569 0.83892 0.84908 0.83745 0.84724 0.87603 0.90350 0.86205 0.86631 0.86563 0.91224 0.90890 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.10 8.35 113.37 0.95 1.05 16 2 O -0.36 -10.34 10.47 -148.98 -1.56 -11.90 16 3 C 0.07 1.93 0.86 -9.53 -0.01 1.92 16 4 C 0.10 3.04 4.51 86.38 0.39 3.43 16 5 N -0.73 -28.05 3.50 -466.89 -1.64 -29.68 16 6 C 0.59 26.75 7.77 86.51 0.67 27.43 16 7 O -0.57 -27.04 16.85 -4.23 -0.07 -27.12 16 8 C -0.05 -2.38 6.77 39.91 0.27 -2.11 16 9 C -0.17 -8.07 10.55 22.63 0.24 -7.83 16 10 C -0.16 -7.30 6.16 -21.33 -0.13 -7.43 16 11 C -0.09 -3.64 10.06 22.32 0.22 -3.42 16 12 C -0.15 -5.34 9.97 22.03 0.22 -5.12 16 13 C -0.14 -5.36 10.02 22.33 0.22 -5.14 16 14 C -0.07 -3.44 8.46 22.38 0.19 -3.25 16 15 C 0.08 4.03 6.04 39.06 0.24 4.27 16 16 N -0.28 -13.91 2.83 -331.35 -0.94 -14.85 16 17 C -0.40 -18.66 7.68 84.09 0.65 -18.02 16 18 H 0.12 5.03 3.77 -2.91 -0.01 5.02 16 19 C 0.03 1.45 5.11 84.95 0.43 1.89 16 20 N -0.84 -41.34 10.10 21.67 0.22 -41.12 16 21 Si 0.95 35.03 27.24 68.60 1.87 36.90 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.24 -7.91 6.96 99.48 0.69 -7.22 16 25 C -0.13 -2.37 6.35 32.05 0.20 -2.17 16 26 C 0.04 0.90 7.78 72.65 0.56 1.46 16 27 O -0.40 -11.78 11.36 -148.98 -1.69 -13.48 16 28 C 0.02 0.75 6.00 72.45 0.43 1.18 16 29 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.04 1.29 2.81 -2.39 -0.01 1.29 16 31 H 0.05 1.60 5.77 -2.38 -0.01 1.59 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.09 2.55 7.92 -2.39 -0.02 2.53 16 34 H 0.42 16.24 1.70 -92.70 -0.16 16.08 16 35 H 0.14 6.18 8.06 -2.91 -0.02 6.16 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.14 3.87 8.06 -2.92 -0.02 3.84 16 38 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.11 5.09 6.54 -2.91 -0.02 5.07 16 40 H 0.29 13.14 8.31 -92.71 -0.77 12.37 16 41 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.12 1.77 7.89 -2.39 -0.02 1.75 16 43 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 2.46 7.72 -2.39 -0.02 2.44 16 46 H 0.06 2.04 5.14 -2.39 -0.01 2.03 16 Total: -1.00 -62.35 356.45 2.81 -59.54 By element: Atomic # 1 Polarization: 52.70 SS G_CDS: 0.87 Total: 53.56 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.75 Total: -11.85 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.35 Total: -85.66 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -3.32 Total: -52.49 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 1.87 Total: 36.90 kcal Total: -62.35 2.81 -59.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613126685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.376 kcal (2) G-P(sol) polarization free energy of solvation -62.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds