Wall clock time and date at job start Wed Apr 1 2020 02:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42891 * 114.00707 * 2 1 4 4 H 1.09008 * 110.77607 * 31.78617 * 3 2 1 5 5 C 1.54319 * 110.72341 * 268.55034 * 3 2 1 6 6 N 1.47019 * 107.27320 * 263.82534 * 5 3 2 7 7 C 1.34773 * 125.64835 * 180.79179 * 6 5 3 8 8 O 1.21661 * 120.00291 * 1.28842 * 7 6 5 9 9 C 1.46893 * 119.99895 * 181.28642 * 7 6 5 10 10 C 1.36125 * 125.43698 * 8.05210 * 9 7 6 11 11 C 1.41699 * 107.75222 * 179.97438 * 10 9 7 12 12 C 1.40019 * 133.35375 * 180.02562 * 11 10 9 13 13 C 1.36573 * 119.83077 * 180.02562 * 12 11 10 14 14 C 1.38849 * 120.60047 * 359.92035 * 13 12 11 15 15 C 1.37844 * 120.63493 * 0.06248 * 14 13 12 16 16 C 1.39083 * 119.81521 * 359.97438 * 15 14 13 17 17 N 1.37837 * 133.16904 * 180.29868 * 16 15 14 18 18 C 1.36892 * 125.61328 * 359.94840 * 17 16 15 19 19 H 1.08008 * 119.99848 * 219.09529 * 18 17 16 20 20 C 1.39003 * 120.00807 * 39.09628 * 18 17 16 21 21 N 1.31355 * 119.99419 * 17.29417 * 20 18 17 22 22 Si 1.86798 * 120.00581 * 197.29711 * 20 18 17 23 23 H 1.48498 * 109.47053 * 5.01685 * 22 20 18 24 24 H 1.48502 * 109.47324 * 125.01776 * 22 20 18 25 25 H 1.48504 * 109.46953 * 245.02009 * 22 20 18 26 26 C 1.47426 * 108.70261 * 1.05821 * 6 5 3 27 27 C 1.54913 * 104.82968 * 335.87410 * 26 6 5 28 28 H 1.09002 * 111.03265 * 278.91713 * 27 26 6 29 29 O 1.42898 * 111.00278 * 155.08808 * 27 26 6 30 30 C 1.42900 * 114.00680 * 91.98537 * 29 27 26 31 31 H 1.09000 * 109.47662 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46603 * 299.99713 * 1 2 3 33 33 H 1.08992 * 109.47233 * 59.99328 * 1 2 3 34 34 H 1.09001 * 109.88300 * 144.40422 * 5 3 2 35 35 H 1.09001 * 110.01166 * 23.31677 * 5 3 2 36 36 H 1.08000 * 126.12540 * 359.94485 * 10 9 7 37 37 H 1.08004 * 120.08165 * 359.97148 * 12 11 10 38 38 H 1.08004 * 119.70102 * 179.97438 * 13 12 11 39 39 H 1.08010 * 119.68334 * 180.02562 * 14 13 12 40 40 H 1.08003 * 120.09076 * 179.97438 * 15 14 13 41 41 H 0.96997 * 119.99718 * 184.77216 * 21 20 18 42 42 H 1.08998 * 110.36695 * 94.70854 * 26 6 5 43 43 H 1.08995 * 110.36919 * 217.03207 * 26 6 5 44 44 H 1.08996 * 109.46921 * 64.57336 * 30 29 27 45 45 H 1.08996 * 109.47445 * 184.57413 * 30 29 27 46 46 H 1.08995 * 109.46521 * 304.57664 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3762 2.0110 0.5369 5 6 2.2658 1.7893 -1.4429 6 7 3.6689 1.4881 -1.7623 7 6 4.2876 1.7701 -2.9260 8 8 3.6830 2.3423 -3.8133 9 6 5.6919 1.3869 -3.1229 10 6 6.4250 0.6131 -2.2763 11 6 7.7238 0.4807 -2.8273 12 6 8.8816 -0.1867 -2.4096 13 6 10.0120 -0.1292 -3.1739 14 6 10.0245 0.5848 -4.3647 15 6 8.8970 1.2497 -4.7969 16 6 7.7340 1.2063 -4.0353 17 7 6.4780 1.7494 -4.2002 18 6 6.0764 2.5233 -5.2556 19 1 5.4282 3.3708 -5.0880 20 6 6.5029 2.2185 -6.5430 21 7 6.9943 1.0295 -6.8078 22 14 6.3773 3.4998 -7.8966 23 1 5.9081 4.7851 -7.3195 24 1 7.7114 3.6945 -8.5192 25 1 5.4126 3.0383 -8.9270 26 6 4.2853 0.8206 -0.6013 27 6 3.4353 1.2716 0.6127 28 1 3.7368 2.2615 0.9553 29 8 3.5138 0.3192 1.6751 30 6 4.5506 0.5876 2.6211 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8898 34 1 2.0927 2.8634 -1.5097 35 1 1.6072 1.2641 -2.1346 36 1 6.0789 0.1783 -1.3502 37 1 8.8810 -0.7449 -1.4850 38 1 10.9041 -0.6444 -2.8496 39 1 10.9265 0.6201 -4.9578 40 1 8.9166 1.8027 -5.7244 41 1 7.3555 0.8389 -7.6876 42 1 4.2373 -0.2622 -0.7166 43 1 5.3191 1.1448 -0.4820 44 1 4.3401 1.5257 3.1345 45 1 4.5970 -0.2224 3.3490 46 1 5.5056 0.6641 2.1014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617123004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:22 Heat of formation + Delta-G solvation = -31.491593 kcal Electronic energy + Delta-G solvation = -30896.887434 eV Core-core repulsion = 26753.579371 eV Total energy + Delta-G solvation = -4143.308063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63990 -39.77844 -38.02116 -37.27670 -35.90359 -35.43819 -33.62311 -31.04229 -30.34762 -28.97582 -28.94725 -27.59304 -26.60596 -26.56801 -24.84347 -24.00406 -22.08162 -21.22260 -20.69833 -19.84642 -19.15273 -17.81203 -17.50726 -16.59387 -15.97511 -15.89087 -15.39539 -15.32664 -15.14178 -15.07637 -14.83368 -14.66209 -14.37294 -14.05890 -13.51121 -13.35206 -13.18473 -12.88118 -12.73745 -12.50363 -12.41850 -12.31899 -12.05377 -11.76086 -11.73318 -11.45894 -11.27688 -11.20486 -11.15045 -10.96641 -10.72330 -10.49576 -10.24079 -9.88979 -9.75033 -9.59874 -9.13624 -9.07534 -8.60986 -8.32765 -7.14599 -6.81795 -6.50594 -4.38097 1.84391 2.78592 3.01979 3.05095 3.09682 3.15275 3.16458 3.53613 3.64894 3.90933 4.23609 4.31694 4.47768 4.72659 4.80862 4.87961 4.98842 5.09859 5.11987 5.22838 5.25116 5.28000 5.34376 5.45068 5.55853 5.57936 5.58714 5.72726 5.82683 5.88391 5.95167 5.98177 6.14182 6.34744 6.49703 6.58400 6.74490 6.88954 6.93234 7.04922 7.11724 7.14246 7.21552 7.50391 7.60254 7.69899 7.82400 7.99249 8.11899 8.46745 8.73565 8.96049 9.36006 10.27652 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.003899 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.074176 B = 7178.703386 C = 9117.021652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.082 3.918 4 H 0.086 0.914 5 C 0.093 3.907 6 N -0.612 5.612 7 C 0.605 3.395 8 O -0.528 6.528 9 C -0.020 4.020 10 C -0.220 4.220 11 C -0.124 4.124 12 C -0.092 4.092 13 C -0.156 4.156 14 C -0.154 4.154 15 C -0.049 4.049 16 C 0.086 3.914 17 N -0.230 5.230 18 C -0.332 4.332 19 H 0.115 0.885 20 C 0.052 3.948 21 N -0.822 5.822 22 Si 0.929 3.071 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.075 3.925 27 C 0.077 3.923 28 H 0.090 0.910 29 O -0.358 6.358 30 C 0.024 3.976 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.280 0.720 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.087 0.913 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 0.334 14.718 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C 0.023 3.977 4 H 0.103 0.897 5 C -0.031 4.031 6 N -0.350 5.350 7 C 0.397 3.603 8 O -0.404 6.404 9 C -0.137 4.137 10 C -0.247 4.247 11 C -0.129 4.129 12 C -0.111 4.111 13 C -0.175 4.175 14 C -0.174 4.174 15 C -0.068 4.068 16 C -0.028 4.028 17 N 0.110 4.890 18 C -0.461 4.461 19 H 0.132 0.868 20 C -0.161 4.161 21 N -0.451 5.451 22 Si 0.753 3.247 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.048 4.048 27 C 0.017 3.983 28 H 0.108 0.892 29 O -0.275 6.275 30 C -0.072 4.072 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.157 0.843 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.782 0.410 13.663 14.842 hybrid contribution -0.106 0.690 -0.834 1.087 sum -5.889 1.100 12.829 14.159 Atomic orbital electron populations 1.22824 0.81227 1.02932 0.99799 1.88048 1.19298 1.25594 1.94595 1.23243 0.94091 0.86234 0.94170 0.89662 1.22393 0.84257 1.00877 0.95541 1.47793 1.11144 1.61613 1.14416 1.16902 0.85304 0.78208 0.79900 1.90788 1.66993 1.41895 1.40687 1.19449 0.91309 1.07242 0.95685 1.20922 0.93867 1.07787 1.02169 1.17976 0.94584 1.03820 0.96514 1.20012 0.91996 1.00034 0.99038 1.20261 0.97478 1.03100 0.96646 1.20537 0.97394 1.01767 0.97743 1.20106 0.90141 0.98957 0.97621 1.18150 0.86282 1.02338 0.96079 1.39923 1.04926 1.30930 1.13178 1.20004 1.32793 1.09235 0.84054 0.86772 1.25640 0.95516 0.96206 0.98690 1.70035 1.33150 1.18095 1.23816 0.85838 0.78477 0.80608 0.79780 1.18474 1.19813 1.19908 1.23223 0.98343 0.98941 0.84320 1.23489 0.94134 0.92947 0.87704 0.89229 1.88036 1.53502 1.49685 1.36319 1.22881 0.90783 1.01240 0.92320 0.89500 0.94053 0.94017 0.90594 0.90576 0.84269 0.87908 0.88004 0.87737 0.86946 0.90941 0.89843 0.88272 0.94118 0.89452 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.88 101.05 1.10 1.37 16 2 O -0.36 -4.63 9.97 -52.53 -0.52 -5.15 16 3 C 0.08 0.95 3.28 -24.90 -0.08 0.87 16 4 H 0.09 0.76 7.89 -51.92 -0.41 0.35 16 5 C 0.09 1.33 6.63 -3.07 -0.02 1.31 16 6 N -0.61 -10.85 3.33 -171.99 -0.57 -11.42 16 7 C 0.60 13.86 7.80 -12.76 -0.10 13.76 16 8 O -0.53 -13.70 15.43 5.22 0.08 -13.62 16 9 C -0.02 -0.48 6.73 -82.25 -0.55 -1.03 16 10 C -0.22 -4.82 9.12 -39.02 -0.36 -5.18 16 11 C -0.12 -2.90 6.16 -106.89 -0.66 -3.56 16 12 C -0.09 -1.85 10.06 -39.52 -0.40 -2.25 16 13 C -0.16 -3.01 9.97 -39.96 -0.40 -3.41 16 14 C -0.15 -3.19 10.02 -39.50 -0.40 -3.59 16 15 C -0.05 -1.18 8.56 -39.41 -0.34 -1.51 16 16 C 0.09 2.23 6.08 -83.83 -0.51 1.72 16 17 N -0.23 -6.22 2.83 -56.08 -0.16 -6.38 16 18 C -0.33 -9.20 8.72 -15.01 -0.13 -9.33 16 19 H 0.11 3.21 7.09 -52.48 -0.37 2.84 16 20 C 0.05 1.35 4.45 -17.47 -0.08 1.27 16 21 N -0.82 -22.24 10.94 55.50 0.61 -21.63 16 22 Si 0.93 20.05 29.59 -169.99 -5.03 15.02 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C 0.08 1.10 4.87 -2.53 -0.01 1.09 16 27 C 0.08 0.90 3.37 -24.58 -0.08 0.82 16 28 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 29 O -0.36 -4.26 10.05 -52.53 -0.53 -4.79 16 30 C 0.02 0.21 10.88 101.05 1.10 1.31 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.14 2.53 4.54 -52.49 -0.24 2.29 16 37 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 38 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 39 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 40 H 0.11 2.78 6.49 -52.48 -0.34 2.44 16 41 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 43 H 0.10 1.44 5.51 -51.93 -0.29 1.16 16 44 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -33.41 375.86 -8.62 -42.03 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.25 Total: 6.63 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.91 Total: -6.34 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.12 Total: -39.43 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.97 Total: -23.57 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.41 -8.62 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617123004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.539 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds