Wall clock time and date at job start Wed Apr 1 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46670 * 180.02562 * 14 13 12 16 16 H 1.08993 * 109.47291 * 304.99686 * 15 14 13 17 17 O 1.42897 * 109.47481 * 65.00070 * 15 14 13 18 18 C 1.53007 * 109.46911 * 184.99704 * 15 14 13 19 19 N 1.46897 * 109.47133 * 179.97438 * 18 15 14 20 20 C 1.46946 * 110.99977 * 170.00299 * 19 18 15 21 21 C 1.53570 * 109.71679 * 52.97592 * 20 19 18 22 22 C 1.50655 * 107.79342 * 49.05623 * 21 20 19 23 23 N 1.32632 * 130.06464 * 164.30455 * 22 21 20 24 24 N 1.29108 * 108.59458 * 180.15210 * 23 22 21 25 25 N 1.29178 * 110.27554 * 359.97400 * 24 23 22 26 26 H 0.97008 * 126.00513 * 179.88125 * 25 24 23 27 27 C 1.34191 * 107.98510 * 359.89815 * 25 24 23 28 28 C 1.47365 * 111.00458 * 294.62898 * 19 18 15 29 29 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 30 30 C 1.36433 * 120.18865 * 359.97438 * 29 12 11 31 31 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 32 32 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 33 33 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 34 34 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 35 35 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 36 36 H 0.96700 * 114.00363 * 59.99736 * 17 15 14 37 37 H 1.08993 * 109.47129 * 300.00081 * 18 15 14 38 38 H 1.09000 * 109.46757 * 60.00265 * 18 15 14 39 39 H 1.08997 * 109.43052 * 173.05625 * 20 19 18 40 40 H 1.09003 * 109.42533 * 292.90352 * 20 19 18 41 41 H 1.08997 * 109.79608 * 168.63244 * 21 20 19 42 42 H 1.08998 * 109.79686 * 289.43156 * 21 20 19 43 43 H 1.08998 * 109.71222 * 46.47646 * 28 19 18 44 44 H 1.08995 * 109.71828 * 167.11942 * 28 19 18 45 45 H 1.08003 * 119.90956 * 180.02562 * 29 12 11 46 46 H 1.08001 * 120.10139 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8569 -8.2845 -1.4827 16 1 -1.9050 -8.1256 -1.2294 17 8 -0.7191 -8.3801 -2.9018 18 6 -0.3662 -9.5806 -0.8343 19 7 -1.1664 -10.7089 -1.3286 20 6 -0.5793 -11.9914 -0.9166 21 6 -0.3602 -11.9964 0.6034 22 6 -1.6387 -11.5366 1.2544 23 7 -2.0381 -11.6351 2.5153 24 7 -3.2104 -11.1041 2.6185 25 7 -3.6018 -10.6569 1.4715 26 1 -4.4471 -10.2172 1.2891 27 6 -2.6338 -10.9078 0.5767 28 6 -2.5695 -10.5922 -0.8934 29 6 1.1839 -4.7955 -0.2800 30 6 1.8220 -3.6476 0.0897 31 1 -0.4850 0.8401 0.0004 32 1 -0.1294 -1.4092 -1.5968 33 1 -1.2585 -3.4809 -2.2359 34 1 1.0086 -7.2238 -1.2974 35 1 -0.0572 -7.0898 0.1219 36 1 0.1897 -8.5221 -3.2001 37 1 0.6819 -9.7394 -1.0876 38 1 -0.4714 -9.5077 0.2482 39 1 -1.2541 -12.8031 -1.1884 40 1 0.3767 -12.1312 -1.4212 41 1 -0.1175 -13.0049 0.9381 42 1 0.4517 -11.3165 0.8616 43 1 -2.9251 -9.5766 -1.0673 44 1 -3.1867 -11.2985 -1.4485 45 1 1.5419 -5.7496 0.0778 46 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617547247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:55 Heat of formation + Delta-G solvation = 38.136041 kcal Electronic energy + Delta-G solvation = -29326.154504 eV Core-core repulsion = 25218.158473 eV Total energy + Delta-G solvation = -4107.996031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.85378 -39.67375 -38.75201 -37.06517 -35.95663 -34.29794 -33.34059 -32.14069 -30.91417 -30.51022 -29.60999 -29.01439 -26.80608 -25.12771 -24.60263 -23.39566 -23.20605 -22.10104 -20.75584 -20.64110 -19.85673 -18.60746 -17.38843 -17.26368 -16.84994 -16.62780 -16.22659 -15.83210 -15.36468 -15.18078 -14.97265 -14.51720 -14.29170 -14.17112 -13.95247 -13.64649 -13.44480 -13.16440 -12.87855 -12.45253 -12.32724 -12.18429 -12.10688 -11.93882 -11.79040 -11.65933 -11.43896 -11.22477 -11.16314 -10.94706 -10.81405 -10.75028 -10.65707 -10.06195 -9.96881 -9.84663 -9.36460 -9.29152 -9.05820 -8.92933 -7.67842 -7.06207 -6.74986 -4.28333 1.14288 2.13184 2.32986 2.75074 2.91803 3.07363 3.10985 3.15901 3.18989 3.84678 3.90528 3.93943 4.15669 4.35049 4.39628 4.48347 4.59199 4.63088 4.77705 4.84750 4.96786 5.04466 5.05338 5.19174 5.29281 5.32497 5.35456 5.46464 5.48257 5.56392 5.63778 5.77796 5.89954 6.02256 6.19111 6.40033 6.44684 6.46488 6.68938 6.94750 7.08163 7.15659 7.42380 7.52510 7.67591 7.75718 7.97935 8.07593 8.17220 8.41392 8.62214 8.87326 8.95611 10.19834 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002027 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.577888 B =13813.105700 C =14303.793980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.010 4.010 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.116 3.884 16 H 0.101 0.899 17 O -0.538 6.538 18 C 0.017 3.983 19 N -0.505 5.505 20 C 0.053 3.947 21 C -0.072 4.072 22 C -0.021 4.021 23 N -0.255 5.255 24 N -0.089 5.089 25 N -0.374 5.374 26 H 0.450 0.550 27 C -0.049 4.049 28 C 0.123 3.877 29 C -0.167 4.167 30 C -0.198 4.198 31 H 0.280 0.720 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.372 0.628 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -21.247 -3.127 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.053 4.053 13 O -0.233 6.233 14 C -0.040 4.040 15 C 0.056 3.944 16 H 0.118 0.882 17 O -0.342 6.342 18 C -0.111 4.111 19 N -0.225 5.225 20 C -0.075 4.075 21 C -0.113 4.113 22 C -0.162 4.162 23 N -0.120 5.120 24 N -0.068 5.068 25 N -0.093 5.093 26 H 0.296 0.704 27 C -0.188 4.188 28 C -0.008 4.008 29 C -0.186 4.186 30 C -0.218 4.218 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.219 0.781 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.370 -21.227 -2.176 22.003 hybrid contribution 0.747 1.082 0.281 1.345 sum -4.623 -20.144 -1.895 20.755 Atomic orbital electron populations 1.69837 1.07520 1.29146 1.35958 1.25885 0.94723 1.01249 0.92346 0.86309 0.80553 0.80771 0.79130 1.19349 1.20356 1.18655 1.19480 0.98131 0.91238 1.40540 0.90507 1.17600 0.91822 0.92116 0.89802 1.20965 0.98573 0.96281 0.99453 1.19832 1.00848 0.90228 1.02811 1.18602 0.97126 0.84780 1.04836 1.85876 1.54890 1.12019 1.70498 1.23092 0.97330 0.85233 0.98305 1.21849 1.00487 0.90063 0.81956 0.88159 1.86622 1.32803 1.95147 1.19675 1.22858 0.98618 0.91055 0.98600 1.62346 1.00628 1.02146 1.57413 1.22412 1.01621 0.91445 0.92030 1.20734 0.91961 1.03025 0.95556 1.21681 0.99077 1.04702 0.90739 1.74763 1.03665 1.15829 1.17758 1.78663 1.08845 1.14358 1.04947 1.44697 1.17313 1.40549 1.06739 0.70408 1.23109 0.91818 1.06185 0.97653 1.21043 0.92034 1.03944 0.83791 1.20388 0.98040 0.97717 1.02473 1.20567 1.03251 0.92539 1.05471 0.90914 0.85754 0.88447 0.92713 0.92731 0.78103 0.89272 0.92867 0.89777 0.88702 0.88957 0.89510 0.88156 0.87781 0.89003 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 11.00 55.55 0.61 -20.04 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.28 9.04 -37.83 -0.34 -12.62 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.09 2.37 5.57 -106.80 -0.59 1.77 16 10 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 11 C -0.12 -2.86 9.92 -39.83 -0.40 -3.25 16 12 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 13 O -0.32 -6.29 10.09 -23.58 -0.24 -6.53 16 14 C 0.04 0.55 4.37 37.16 0.16 0.71 16 15 C 0.12 1.30 3.14 -26.73 -0.08 1.21 16 16 H 0.10 1.17 6.29 -51.93 -0.33 0.85 16 17 O -0.54 -6.43 13.17 -40.08 -0.53 -6.96 16 18 C 0.02 0.14 3.68 -3.82 -0.01 0.13 16 19 N -0.50 -3.64 4.81 -235.39 -1.13 -4.78 16 20 C 0.05 0.30 5.92 -3.50 -0.02 0.28 16 21 C -0.07 -0.51 5.72 -27.61 -0.16 -0.67 16 22 C -0.02 -0.21 6.47 -83.13 -0.54 -0.75 16 23 N -0.25 -3.31 12.39 33.18 0.41 -2.90 16 24 N -0.09 -1.07 13.40 60.35 0.81 -0.27 16 25 N -0.37 -3.15 6.96 33.39 0.23 -2.92 16 26 H 0.45 2.09 8.96 -190.02 -1.70 0.39 16 27 C -0.05 -0.42 6.66 -82.52 -0.55 -0.97 16 28 C 0.12 0.83 6.04 -4.82 -0.03 0.80 16 29 C -0.17 -3.73 8.96 -39.83 -0.36 -4.09 16 30 C -0.20 -4.85 9.74 -39.25 -0.38 -5.24 16 31 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 32 H 0.12 3.31 6.21 -52.49 -0.33 2.98 16 33 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 34 H 0.05 0.74 7.64 -51.93 -0.40 0.34 16 35 H 0.05 0.79 7.65 -51.93 -0.40 0.40 16 36 H 0.37 3.29 9.05 45.56 0.41 3.70 16 37 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.05 0.50 6.03 -51.93 -0.31 0.19 16 39 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.62 7.25 -51.93 -0.38 0.24 16 43 H 0.10 0.70 5.98 -51.93 -0.31 0.39 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.09 1.76 6.27 -52.48 -0.33 1.43 16 46 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -33.07 372.69 -9.81 -42.88 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.57 Total: 7.49 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.99 Total: -25.19 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.93 Total: -30.90 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.77 Total: -13.49 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.07 -9.81 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617547247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.013 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds