Wall clock time and date at job start Wed Apr 1 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46670 * 180.02562 * 14 13 12 16 16 H 1.08993 * 109.47291 * 304.99686 * 15 14 13 17 17 O 1.42897 * 109.47481 * 65.00070 * 15 14 13 18 18 C 1.53007 * 109.46911 * 184.99704 * 15 14 13 19 19 N 1.46897 * 109.47133 * 179.97438 * 18 15 14 20 20 C 1.46946 * 110.99977 * 170.00299 * 19 18 15 21 21 C 1.53570 * 109.71679 * 52.97592 * 20 19 18 22 22 C 1.50655 * 107.79342 * 49.05623 * 21 20 19 23 23 N 1.32632 * 130.06464 * 164.30455 * 22 21 20 24 24 N 1.29108 * 108.59458 * 180.15210 * 23 22 21 25 25 N 1.29178 * 110.27554 * 359.97400 * 24 23 22 26 26 H 0.97008 * 126.00513 * 179.88125 * 25 24 23 27 27 C 1.34191 * 107.98510 * 359.89815 * 25 24 23 28 28 C 1.47365 * 111.00458 * 294.62898 * 19 18 15 29 29 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 30 30 C 1.36433 * 120.18865 * 359.97438 * 29 12 11 31 31 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 32 32 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 33 33 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 34 34 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 35 35 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 36 36 H 0.96700 * 114.00363 * 59.99736 * 17 15 14 37 37 H 1.08993 * 109.47129 * 300.00081 * 18 15 14 38 38 H 1.09000 * 109.46757 * 60.00265 * 18 15 14 39 39 H 1.08997 * 109.43052 * 173.05625 * 20 19 18 40 40 H 1.09003 * 109.42533 * 292.90352 * 20 19 18 41 41 H 1.08997 * 109.79608 * 168.63244 * 21 20 19 42 42 H 1.08998 * 109.79686 * 289.43156 * 21 20 19 43 43 H 1.08998 * 109.71222 * 46.47646 * 28 19 18 44 44 H 1.08995 * 109.71828 * 167.11942 * 28 19 18 45 45 H 1.08003 * 119.90956 * 180.02562 * 29 12 11 46 46 H 1.08001 * 120.10139 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8569 -8.2845 -1.4827 16 1 -1.9050 -8.1256 -1.2294 17 8 -0.7191 -8.3801 -2.9018 18 6 -0.3662 -9.5806 -0.8343 19 7 -1.1664 -10.7089 -1.3286 20 6 -0.5793 -11.9914 -0.9166 21 6 -0.3602 -11.9964 0.6034 22 6 -1.6387 -11.5366 1.2544 23 7 -2.0381 -11.6351 2.5153 24 7 -3.2104 -11.1041 2.6185 25 7 -3.6018 -10.6569 1.4715 26 1 -4.4471 -10.2172 1.2891 27 6 -2.6338 -10.9078 0.5767 28 6 -2.5695 -10.5922 -0.8934 29 6 1.1839 -4.7955 -0.2800 30 6 1.8220 -3.6476 0.0897 31 1 -0.4850 0.8401 0.0004 32 1 -0.1294 -1.4092 -1.5968 33 1 -1.2585 -3.4809 -2.2359 34 1 1.0086 -7.2238 -1.2974 35 1 -0.0572 -7.0898 0.1219 36 1 0.1897 -8.5221 -3.2001 37 1 0.6819 -9.7394 -1.0876 38 1 -0.4714 -9.5077 0.2482 39 1 -1.2541 -12.8031 -1.1884 40 1 0.3767 -12.1312 -1.4212 41 1 -0.1175 -13.0049 0.9381 42 1 0.4517 -11.3165 0.8616 43 1 -2.9251 -9.5766 -1.0673 44 1 -3.1867 -11.2985 -1.4485 45 1 1.5419 -5.7496 0.0778 46 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617547247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:54 Heat of formation + Delta-G solvation = 12.643910 kcal Electronic energy + Delta-G solvation = -29327.259926 eV Core-core repulsion = 25218.158473 eV Total energy + Delta-G solvation = -4109.101453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.58245 -40.75461 -39.97072 -38.40697 -37.24632 -35.18670 -35.02012 -32.90104 -31.90641 -31.48938 -31.12471 -30.70134 -27.79240 -26.55450 -25.64893 -24.11285 -24.04785 -23.16726 -22.50014 -22.19386 -20.53855 -19.31069 -19.23426 -18.68659 -17.67459 -17.62034 -17.22795 -17.05614 -16.59463 -16.01007 -15.90841 -15.76057 -15.62641 -15.18143 -15.09227 -14.83825 -14.34174 -14.18022 -14.08115 -13.94222 -13.79680 -13.55623 -13.06526 -13.02359 -12.82734 -12.78549 -12.61575 -12.58808 -12.39675 -12.19066 -12.01197 -11.77192 -11.62428 -11.59706 -11.47088 -11.21234 -10.92587 -10.89355 -9.99510 -9.57687 -9.51590 -8.93402 -8.60900 -6.24135 0.43897 0.93795 1.01115 1.35976 1.39296 1.51760 1.52707 1.74601 2.22060 2.31105 2.71297 2.90761 3.23065 3.54913 3.58972 3.68856 3.74752 3.79893 3.91381 4.00342 4.11482 4.19619 4.27255 4.30929 4.34906 4.40915 4.43625 4.46882 4.69187 4.74439 4.78797 4.85826 4.90556 5.01575 5.02863 5.06534 5.20508 5.20696 5.27164 5.56679 5.63336 5.83759 5.87009 5.88740 5.93788 6.04697 6.25205 6.55310 6.79287 6.93999 6.94709 7.08874 7.30863 8.35979 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002027 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.577888 B =13813.105700 C =14303.793980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.152 4.152 11 C -0.133 4.133 12 C 0.002 3.998 13 O -0.328 6.328 14 C 0.028 3.972 15 C 0.128 3.872 16 H 0.093 0.907 17 O -0.553 6.553 18 C 0.028 3.972 19 N -0.505 5.505 20 C 0.059 3.941 21 C -0.071 4.071 22 C -0.036 4.036 23 N -0.294 5.294 24 N -0.124 5.124 25 N -0.361 5.361 26 H 0.464 0.536 27 C -0.038 4.038 28 C 0.123 3.877 29 C -0.165 4.165 30 C -0.209 4.209 31 H 0.287 0.713 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.386 0.614 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 -22.666 -4.152 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.053 3.947 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.042 4.042 13 O -0.244 6.244 14 C -0.049 4.049 15 C 0.068 3.932 16 H 0.111 0.889 17 O -0.359 6.359 18 C -0.100 4.100 19 N -0.226 5.226 20 C -0.069 4.069 21 C -0.111 4.111 22 C -0.178 4.178 23 N -0.158 5.158 24 N -0.102 5.102 25 N -0.083 5.083 26 H 0.313 0.687 27 C -0.178 4.178 28 C -0.007 4.007 29 C -0.184 4.184 30 C -0.229 4.229 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.235 0.765 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.713 -22.677 -3.193 23.381 hybrid contribution 0.469 1.328 0.537 1.508 sum -4.243 -21.349 -2.656 21.928 Atomic orbital electron populations 1.69892 1.08981 1.30458 1.36559 1.26743 0.95484 1.04506 0.91342 0.85190 0.79108 0.76031 0.79348 1.18717 1.19430 1.18195 1.19722 0.98370 0.92433 1.42441 0.90607 1.17950 0.92664 0.93325 0.90749 1.20888 0.99399 0.96415 1.00480 1.20007 1.01260 0.90645 1.03285 1.18665 0.96575 0.85568 1.03409 1.85873 1.55152 1.12698 1.70694 1.23519 0.98904 0.83892 0.98572 1.21736 0.99615 0.89984 0.81895 0.88882 1.86598 1.34250 1.95143 1.19903 1.22698 0.99747 0.90019 0.97530 1.62368 1.00627 1.02404 1.57169 1.22497 1.02838 0.90708 0.90887 1.20855 0.90593 1.03310 0.96355 1.22256 1.00529 1.04903 0.90130 1.74710 1.04395 1.17122 1.19612 1.78588 1.09234 1.15977 1.06410 1.44744 1.17886 1.39603 1.06025 0.68715 1.23436 0.91131 1.04928 0.98265 1.21217 0.92364 1.04540 0.82599 1.20687 0.97409 0.98583 1.01692 1.20811 1.03776 0.92651 1.05620 0.90220 0.87356 0.87395 0.91151 0.92588 0.76504 0.87336 0.93882 0.88763 0.86692 0.88258 0.89513 0.88176 0.85655 0.85475 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.12 11.00 21.82 0.24 -43.88 16 2 C 0.03 1.69 5.13 85.24 0.44 2.12 16 3 Si 0.98 38.49 29.60 68.60 2.03 40.52 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.50 -27.13 9.04 23.40 0.21 -26.92 16 8 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 9 C 0.06 3.01 5.57 -21.28 -0.12 2.89 16 10 C -0.15 -8.18 8.64 22.49 0.19 -7.98 16 11 C -0.13 -6.49 9.92 22.11 0.22 -6.27 16 12 C 0.00 0.08 6.71 22.79 0.15 0.23 16 13 O -0.33 -12.46 10.09 -85.28 -0.86 -13.32 16 14 C 0.03 0.73 4.37 71.98 0.31 1.04 16 15 C 0.13 2.51 3.14 30.60 0.10 2.60 16 16 H 0.09 1.98 6.29 -2.39 -0.02 1.96 16 17 O -0.55 -11.60 13.17 -144.34 -1.90 -13.50 16 18 C 0.03 0.38 3.68 86.31 0.32 0.70 16 19 N -0.51 -5.61 4.81 -898.63 -4.32 -9.93 16 20 C 0.06 0.46 5.92 86.49 0.51 0.97 16 21 C -0.07 -0.85 5.72 30.03 0.17 -0.67 16 22 C -0.04 -0.69 6.47 41.86 0.27 -0.42 16 23 N -0.29 -7.62 12.39 -48.95 -0.61 -8.22 16 24 N -0.12 -2.99 13.40 37.02 0.50 -2.49 16 25 N -0.36 -5.79 6.96 -48.27 -0.34 -6.13 16 26 H 0.46 3.89 8.96 -219.63 -1.97 1.92 16 27 C -0.04 -0.58 6.66 41.58 0.28 -0.30 16 28 C 0.12 1.34 6.04 85.40 0.52 1.85 16 29 C -0.17 -7.13 8.96 22.11 0.20 -6.94 16 30 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16 31 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 32 H 0.11 6.04 6.21 -2.91 -0.02 6.02 16 33 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.07 1.66 7.64 -2.39 -0.02 1.64 16 35 H 0.06 1.48 7.65 -2.39 -0.02 1.47 16 36 H 0.39 5.56 9.05 -74.06 -0.67 4.89 16 37 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.04 0.70 6.03 -2.39 -0.01 0.68 16 39 H 0.09 0.61 8.07 -2.39 -0.02 0.59 16 40 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.04 7.25 -2.39 -0.02 1.02 16 43 H 0.10 1.14 5.98 -2.39 -0.01 1.13 16 44 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.13 4.50 6.27 -2.91 -0.02 4.48 16 46 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -73.18 372.69 -2.86 -76.03 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -1.59 Total: 28.00 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 3.99 Total: -47.08 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -4.53 Total: -70.66 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -2.76 Total: -26.82 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -73.18 -2.86 -76.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617547247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.679 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds