Wall clock time and date at job start Wed Apr 1 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47085 * 270.00354 * 3 2 1 5 5 H 1.48496 * 109.46891 * 30.00380 * 3 2 1 6 6 H 1.48498 * 109.47027 * 149.99970 * 3 2 1 7 7 C 1.37874 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99758 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00632 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47573 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47071 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46869 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99954 * 180.02562 * 12 11 10 14 14 O 1.21588 * 120.00313 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00080 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00116 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46892 * 180.02562 * 16 15 13 18 18 N 1.31134 * 126.55425 * 90.25246 * 17 16 15 19 19 C 1.34493 * 105.61626 * 180.11742 * 18 17 16 20 20 C 1.50701 * 126.28783 * 179.90266 * 19 18 17 21 21 C 1.50706 * 109.46813 * 269.71214 * 20 19 18 22 22 C 1.38238 * 119.99727 * 90.00361 * 21 20 19 23 23 C 1.38234 * 119.99693 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00207 * 270.01852 * 21 20 19 27 27 N 1.29945 * 107.42413 * 359.64119 * 19 18 17 28 28 O 1.21303 * 110.25424 * 0.22418 * 27 19 18 29 29 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47035 * 59.99885 * 9 7 2 31 31 H 1.09001 * 109.47143 * 300.00391 * 9 7 2 32 32 H 1.09006 * 109.46605 * 60.00193 * 10 9 7 33 33 H 1.09003 * 109.46744 * 300.00334 * 10 9 7 34 34 H 1.09001 * 109.47479 * 59.99980 * 11 10 9 35 35 H 1.08999 * 109.46990 * 299.99428 * 11 10 9 36 36 H 0.97003 * 120.00147 * 359.97438 * 12 11 10 37 37 H 0.97000 * 119.99780 * 359.97438 * 15 13 12 38 38 H 1.08996 * 109.47474 * 59.99405 * 16 15 13 39 39 H 1.09006 * 109.46871 * 299.99815 * 16 15 13 40 40 H 1.09000 * 109.47134 * 149.71730 * 20 19 18 41 41 H 1.08993 * 109.47324 * 29.71124 * 20 19 18 42 42 H 1.07997 * 119.99846 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 46 46 H 1.07999 * 120.00008 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 7 6.0399 -4.0177 -0.0014 13 6 7.3649 -4.2640 -0.0010 14 8 8.1551 -3.3399 -0.0006 15 7 7.8142 -5.5347 -0.0009 16 6 9.2545 -5.8024 -0.0009 17 6 9.4887 -7.2911 -0.0015 18 7 9.6147 -8.0615 -1.0552 19 6 9.8052 -9.3033 -0.5750 20 6 10.0025 -10.5546 -1.3913 21 6 8.6648 -11.1931 -1.6632 22 6 7.9502 -10.8455 -2.7943 23 6 6.7229 -11.4308 -3.0434 24 6 6.2104 -12.3641 -2.1618 25 6 6.9228 -12.7081 -1.0282 26 6 8.1522 -12.1262 -0.7814 27 7 9.7933 -9.2250 0.7220 28 8 9.6129 -8.0776 1.0719 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8746 -0.6800 -0.8911 32 1 3.6579 -3.1506 -0.8908 33 1 3.6585 -3.1502 0.8893 34 1 5.9149 -2.1226 0.8890 35 1 5.9149 -2.1228 -0.8910 36 1 5.4095 -4.7550 -0.0014 37 1 7.1839 -6.2720 -0.0008 38 1 9.7057 -5.3635 0.8889 39 1 9.7056 -5.3637 -0.8911 40 1 10.6328 -11.2524 -0.8399 41 1 10.4824 -10.3001 -2.3362 42 1 8.3504 -10.1161 -3.4829 43 1 6.1644 -11.1589 -3.9269 44 1 5.2514 -12.8210 -2.3563 45 1 6.5204 -13.4339 -0.3371 46 1 8.7102 -12.3973 0.1026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729048609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:40 Heat of formation + Delta-G solvation = 54.653822 kcal Electronic energy + Delta-G solvation = -27672.413185 eV Core-core repulsion = 23565.133419 eV Total energy + Delta-G solvation = -4107.279766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.10836 -40.04577 -39.75197 -36.72295 -36.11016 -35.22517 -33.76705 -33.30547 -32.22781 -31.37979 -31.32547 -28.38851 -28.08668 -26.62576 -24.21380 -23.10566 -22.94135 -22.49660 -21.34255 -21.09922 -20.38528 -18.74831 -18.54021 -17.79222 -17.19763 -16.93146 -16.38662 -15.91084 -15.69384 -15.62844 -15.26971 -14.95896 -14.60022 -14.47142 -14.05532 -13.88244 -13.86480 -13.80302 -13.46837 -13.02259 -12.85233 -12.70293 -12.58002 -12.25419 -12.02248 -11.91909 -11.59815 -11.55278 -11.44100 -11.09208 -10.90268 -10.62627 -10.34909 -10.04084 -9.85232 -9.70447 -9.54991 -9.36464 -9.26529 -9.23594 -8.81747 -8.56013 -6.06759 -4.05607 0.50824 0.81222 0.96038 1.66370 2.15830 2.71181 3.01990 3.13825 3.31308 3.34772 3.38953 3.43066 3.58686 4.15418 4.21340 4.27845 4.44078 4.45915 4.57114 4.70457 4.75315 4.86264 4.97213 5.03494 5.08948 5.19349 5.23291 5.27347 5.43214 5.50156 5.54701 5.59669 5.66154 5.95179 6.00412 6.02668 6.08293 6.09589 6.30748 6.44339 6.53231 6.58277 6.77932 6.81714 7.22224 7.35591 7.64429 7.74806 7.89815 8.48245 8.51305 8.96961 9.55394 11.06411 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.001743 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.321312 B =16059.226534 C =17734.807682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.132 3.868 12 N -0.737 5.737 13 C 0.709 3.291 14 O -0.587 6.587 15 N -0.749 5.749 16 C 0.239 3.761 17 C 0.166 3.834 18 N -0.456 5.456 19 C 0.176 3.824 20 C 0.012 3.988 21 C -0.093 4.093 22 C -0.101 4.101 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.107 4.107 27 N -0.373 5.373 28 O 0.090 5.910 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.400 0.600 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.398 -26.845 -2.947 34.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C 0.009 3.991 12 N -0.391 5.391 13 C 0.408 3.592 14 O -0.465 6.465 15 N -0.409 5.409 16 C 0.112 3.888 17 C -0.055 4.055 18 N -0.191 5.191 19 C -0.097 4.097 20 C -0.027 4.027 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.125 4.125 27 N -0.078 5.078 28 O 0.029 5.971 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.234 0.766 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 22.124 -26.627 -2.851 34.736 hybrid contribution -0.384 0.267 0.052 0.471 sum 21.740 -26.360 -2.799 34.283 Atomic orbital electron populations 1.69911 1.06323 1.26961 1.50986 1.25035 0.94760 0.99269 0.94474 0.86770 0.80413 0.83494 0.78595 1.20241 1.21394 1.18844 1.21091 0.89315 0.94495 1.51110 0.91035 1.19502 0.97251 0.91410 0.96735 1.21718 0.90602 1.01076 1.01767 1.21573 0.95785 0.79673 1.02048 1.45318 1.04496 1.10391 1.78870 1.15789 0.83302 0.82181 0.77903 1.90951 1.54983 1.42791 1.57785 1.44918 1.06266 1.07361 1.82356 1.19377 0.82989 0.79966 1.06439 1.28717 0.97731 0.98236 0.80830 1.71938 1.17872 1.00570 1.28685 1.25679 1.00730 0.95078 0.88244 1.18898 0.95651 0.88752 0.99357 1.19526 0.95847 0.98017 0.96034 1.21122 0.94804 0.99109 0.96891 1.21211 0.95865 0.96901 0.99782 1.21257 0.99880 0.97607 0.94555 1.21170 0.94878 1.00202 0.97642 1.21085 0.96148 0.96513 0.98730 1.74676 1.19614 0.97871 1.15642 1.85353 1.63523 1.12615 1.35608 0.92699 0.96236 0.96672 0.92109 0.92080 0.91711 0.91742 0.76960 0.76616 0.87499 0.86699 0.87959 0.87428 0.85571 0.85676 0.85844 0.85827 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 11 C 0.13 2.09 5.67 -4.04 -0.02 2.07 16 12 N -0.74 -9.44 5.56 -65.23 -0.36 -9.80 16 13 C 0.71 9.33 8.57 -86.91 -0.74 8.59 16 14 O -0.59 -9.98 16.34 5.29 0.09 -9.89 16 15 N -0.75 -6.92 5.55 -66.42 -0.37 -7.29 16 16 C 0.24 1.88 6.30 -5.20 -0.03 1.84 16 17 C 0.17 1.41 7.88 -13.06 -0.10 1.30 16 18 N -0.46 -4.32 11.55 -9.86 -0.11 -4.43 16 19 C 0.18 1.58 7.45 -156.37 -1.17 0.42 16 20 C 0.01 0.08 5.97 -29.03 -0.17 -0.10 16 21 C -0.09 -0.69 5.12 -104.62 -0.54 -1.22 16 22 C -0.10 -0.75 9.70 -39.58 -0.38 -1.14 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.11 -0.79 10.05 -39.58 -0.40 -1.18 16 25 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 26 C -0.11 -0.78 9.70 -39.58 -0.38 -1.16 16 27 N -0.37 -3.72 12.16 30.90 0.38 -3.35 16 28 O 0.09 0.84 11.31 18.09 0.20 1.04 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 31 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.40 4.06 8.49 -40.82 -0.35 3.72 16 37 H 0.40 3.00 8.48 -40.82 -0.35 2.65 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.11 0.55 8.08 -51.93 -0.42 0.13 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -34.69 398.94 -10.02 -44.71 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.54 Total: 1.61 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -5.42 Total: -8.69 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.30 Total: -51.68 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.29 Total: -8.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.69 -10.02 -44.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729048609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.363 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds