Wall clock time and date at job start Wed Apr 1 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00481 * 2 1 4 4 C 1.52995 * 109.47366 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47096 * 180.02562 * 4 3 2 6 6 N 1.46506 * 109.47437 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00085 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00027 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99805 * 180.02562 * 7 6 5 10 10 H 1.09005 * 109.47224 * 300.00459 * 9 7 6 11 11 C 1.47206 * 109.46886 * 60.00318 * 9 7 6 12 12 N 7.83689 * 157.20856 * 315.45426 * 2 1 3 13 13 C 1.50700 * 109.47133 * 180.02562 * 9 7 6 14 14 O 1.20759 * 119.99866 * 335.00202 * 13 9 7 15 15 C 1.50701 * 119.99850 * 155.00049 * 13 9 7 16 16 C 1.50700 * 109.46813 * 179.97438 * 15 13 9 17 17 C 1.37640 * 120.13180 * 265.30632 * 16 15 13 18 18 C 1.38613 * 120.24862 * 180.32332 * 17 16 15 19 19 C 1.38655 * 120.50174 * 359.67182 * 18 17 16 20 20 C 1.37598 * 120.24576 * 359.97438 * 19 18 17 21 21 C 1.40702 * 120.12495 * 85.00356 * 16 15 13 22 22 C 1.41393 * 120.24620 * 359.97406 * 21 16 15 23 23 H 1.07999 * 119.99787 * 29.07372 * 22 21 16 24 24 C 1.39938 * 120.00244 * 209.07592 * 22 21 16 25 25 N 1.30825 * 119.99995 * 197.10446 * 24 22 21 26 26 Si 1.86802 * 120.00186 * 17.09469 * 24 22 21 27 27 H 1.48500 * 109.47181 * 270.00657 * 26 24 22 28 28 H 1.48507 * 109.46537 * 30.00411 * 26 24 22 29 29 H 1.48490 * 109.47208 * 150.00176 * 26 24 22 30 30 H 1.08999 * 109.47361 * 59.99625 * 1 2 3 31 31 H 1.09003 * 109.47351 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47107 * 300.00116 * 1 2 3 33 33 H 1.09003 * 109.46672 * 59.99820 * 3 2 1 34 34 H 1.08999 * 109.46739 * 300.00285 * 3 2 1 35 35 H 1.08993 * 109.47576 * 59.99954 * 4 3 2 36 36 H 1.08999 * 109.47142 * 299.99692 * 4 3 2 37 37 H 1.09006 * 109.47495 * 59.99914 * 5 4 3 38 38 H 1.09005 * 109.47235 * 299.99843 * 5 4 3 39 39 H 0.97001 * 119.99250 * 0.02562 * 6 5 4 40 40 H 1.08999 * 109.47299 * 60.00410 * 15 13 9 41 41 H 1.08998 * 109.47401 * 299.99879 * 15 13 9 42 42 H 1.08005 * 119.87130 * 0.02562 * 17 16 15 43 43 H 1.08001 * 119.74473 * 179.69460 * 18 17 16 44 44 H 1.08002 * 119.87493 * 180.02562 * 19 18 17 45 45 H 1.08003 * 120.12022 * 180.02562 * 20 19 18 46 46 H 0.96996 * 120.00020 * 355.45560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1578 2.5822 0.0000 6 7 5.6183 2.4666 0.0000 7 6 6.3822 3.5769 0.0000 8 8 5.8606 4.6718 0.0005 9 6 7.8845 3.4579 -0.0006 10 1 8.2064 2.9166 0.8891 11 6 8.3183 2.7277 -1.2029 12 7 8.6539 2.1636 -2.1296 13 6 8.4975 4.8346 0.0002 14 8 7.8770 5.7720 -0.4409 15 6 9.8847 5.0414 0.5514 16 6 10.2596 6.4964 0.4353 17 6 10.9757 6.9407 -0.6529 18 6 11.3275 8.2772 -0.7588 19 6 10.9576 9.1824 0.2242 20 6 10.2353 8.7619 1.3173 21 6 9.8733 7.4071 1.4359 22 6 9.1315 6.9635 2.5549 23 1 9.2448 5.9500 2.9105 24 6 8.2505 7.8375 3.2016 25 7 7.8223 7.5617 4.4066 26 14 7.6861 9.3983 2.3443 27 1 8.6243 10.5047 2.6623 28 1 7.6626 9.1758 0.8762 29 1 6.3230 9.7551 2.8128 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 3.8365 3.1227 0.8905 38 1 3.8359 3.1237 -0.8896 39 1 6.0353 1.5908 -0.0008 40 1 10.5943 4.4376 -0.0143 41 1 9.9076 4.7424 1.5993 42 1 11.2687 6.2444 -1.4248 43 1 11.8938 8.6161 -1.6138 44 1 11.2368 10.2216 0.1312 45 1 9.9479 9.4687 2.0816 46 1 8.0624 6.7206 4.8259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761100793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:39 Heat of formation + Delta-G solvation = -73.705676 kcal Electronic energy + Delta-G solvation = -29195.157987 eV Core-core repulsion = 25050.019384 eV Total energy + Delta-G solvation = -4145.138603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.57319 -38.85473 -38.32179 -37.49022 -36.70642 -35.56764 -33.67114 -32.71786 -32.04791 -31.06914 -30.16383 -27.56556 -26.94955 -25.21746 -24.52490 -22.19657 -21.62667 -21.18748 -20.71944 -19.36322 -18.46800 -18.06224 -17.16256 -16.99547 -16.67326 -16.20644 -15.66810 -15.43781 -15.25991 -15.01723 -14.78879 -14.40568 -14.17816 -14.08115 -13.80063 -13.68660 -13.46975 -12.98510 -12.83797 -12.68291 -12.54925 -12.31290 -12.25660 -12.22059 -12.05643 -11.87861 -11.51087 -11.46559 -11.31635 -11.27699 -10.78323 -10.30199 -10.17112 -10.11609 -10.08726 -9.69953 -9.31122 -9.27960 -9.14912 -8.95468 -7.66733 -7.61002 -7.17949 -4.51382 2.05993 2.13986 2.41347 2.60471 2.70404 2.74781 2.83965 3.28293 3.42605 3.47530 3.68789 3.74304 4.11070 4.17569 4.38394 4.52189 4.62679 4.68544 4.72750 4.86624 4.93830 4.96854 5.06736 5.14360 5.27053 5.34242 5.37448 5.56228 5.69425 5.72167 5.75526 5.97773 6.05482 6.14261 6.19479 6.20374 6.54124 6.71792 6.73963 7.04937 7.12976 7.19460 7.34905 7.51117 7.66214 7.70552 7.84251 7.90929 7.99414 8.05917 8.39036 8.59468 8.79628 10.08252 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.002798 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.588011 B =10006.444391 C =11559.414051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.131 4.131 5 C 0.122 3.878 6 N -0.731 5.731 7 C 0.524 3.476 8 O -0.475 6.475 9 C -0.067 4.067 10 H 0.162 0.838 11 C 0.219 3.781 12 N -0.399 5.399 13 C 0.364 3.636 14 O -0.369 6.369 15 C -0.091 4.091 16 C -0.186 4.186 17 C -0.067 4.067 18 C -0.246 4.246 19 C -0.074 4.074 20 C -0.243 4.243 21 C 0.115 3.885 22 C -0.514 4.514 23 H 0.077 0.923 24 C 0.049 3.951 25 N -0.820 5.820 26 Si 1.068 2.932 27 H -0.280 1.280 28 H -0.257 1.257 29 H -0.292 1.292 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -14.255 -4.612 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.169 4.169 5 C -0.001 4.001 6 N -0.386 5.386 7 C 0.305 3.695 8 O -0.345 6.345 9 C -0.093 4.093 10 H 0.180 0.820 11 C -0.100 4.100 12 N -0.075 5.075 13 C 0.229 3.771 14 O -0.233 6.233 15 C -0.128 4.128 16 C -0.187 4.187 17 C -0.086 4.086 18 C -0.265 4.265 19 C -0.092 4.092 20 C -0.262 4.262 21 C 0.112 3.888 22 C -0.543 4.543 23 H 0.095 0.905 24 C -0.170 4.170 25 N -0.442 5.442 26 Si 0.895 3.105 27 H -0.207 1.207 28 H -0.182 1.182 29 H -0.219 1.219 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.357 -12.579 -5.951 16.769 hybrid contribution 0.829 -1.670 0.408 1.908 sum -8.528 -14.249 -5.543 17.507 Atomic orbital electron populations 1.22753 0.80692 1.02842 1.00197 1.87846 1.19984 1.27905 1.95500 1.22383 0.93163 0.84843 1.00968 1.21671 0.94043 0.96916 1.04239 1.21209 0.79130 0.96474 1.03301 1.45877 1.06895 1.08770 1.77054 1.19533 0.87136 0.84871 0.77913 1.90923 1.73086 1.25574 1.44874 1.19801 0.95253 1.00193 0.94007 0.82044 1.27728 0.94533 0.93850 0.93867 1.81233 1.07291 1.09255 1.09727 1.23987 0.89585 0.85753 0.77761 1.90518 1.60024 1.41744 1.30989 1.20662 0.92512 0.96971 1.02654 1.19069 1.09008 0.93299 0.97332 1.20447 0.97204 0.95129 0.95776 1.20336 1.11041 0.93832 1.01271 1.20624 0.97034 0.97358 0.94219 1.21145 1.07586 0.96893 1.00550 1.17514 0.89545 0.90886 0.90851 1.20535 1.21731 1.00604 1.11382 0.90517 1.27125 0.92776 1.03671 0.93417 1.70571 1.39571 1.23610 1.10485 0.83670 0.75484 0.73615 0.77768 1.20692 1.18159 1.21944 0.93950 0.89556 0.93877 0.92620 0.92794 0.90348 0.90120 0.90608 0.90985 0.76515 0.89741 0.87849 0.89186 0.88980 0.88836 0.87709 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.51 10.70 -35.23 -0.38 -3.88 16 3 C 0.06 0.48 5.94 37.16 0.22 0.70 16 4 C -0.13 -0.94 5.70 -26.73 -0.15 -1.09 16 5 C 0.12 1.14 5.67 -4.04 -0.02 1.11 16 6 N -0.73 -7.32 5.45 -60.29 -0.33 -7.65 16 7 C 0.52 7.46 7.08 -10.99 -0.08 7.38 16 8 O -0.48 -9.29 14.52 -18.20 -0.26 -9.55 16 9 C -0.07 -0.84 2.84 -95.71 -0.27 -1.12 16 10 H 0.16 1.27 8.14 -51.93 -0.42 0.85 16 11 C 0.22 2.78 14.39 -20.77 -0.30 2.48 16 12 N -0.40 -5.66 18.53 42.14 0.78 -4.88 16 13 C 0.36 6.48 6.13 -29.03 -0.18 6.30 16 14 O -0.37 -8.41 14.36 -17.77 -0.26 -8.66 16 15 C -0.09 -1.58 5.29 -29.03 -0.15 -1.73 16 16 C -0.19 -4.10 4.43 -103.91 -0.46 -4.56 16 17 C -0.07 -1.42 9.66 -39.66 -0.38 -1.80 16 18 C -0.25 -5.21 10.05 -39.29 -0.39 -5.61 16 19 C -0.07 -1.64 10.02 -39.66 -0.40 -2.04 16 20 C -0.24 -5.92 7.26 -38.87 -0.28 -6.21 16 21 C 0.11 2.86 5.13 -106.83 -0.55 2.31 16 22 C -0.51 -13.17 8.80 -37.75 -0.33 -13.50 16 23 H 0.08 1.91 6.60 -52.49 -0.35 1.57 16 24 C 0.05 1.30 5.42 -17.34 -0.09 1.21 16 25 N -0.82 -21.84 13.65 55.55 0.76 -21.08 16 26 Si 1.07 25.76 24.90 -169.99 -4.23 21.53 16 27 H -0.28 -6.32 6.45 56.52 0.36 -5.96 16 28 H -0.26 -6.47 7.02 56.52 0.40 -6.08 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 2.81 8.34 -40.82 -0.34 2.47 16 40 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 41 H 0.10 1.69 6.51 -51.93 -0.34 1.35 16 42 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 43 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.11 2.55 4.43 -52.48 -0.23 2.32 16 46 H 0.28 7.21 8.73 -40.82 -0.36 6.86 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -34.08 395.78 -7.03 -41.12 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.37 Total: 1.96 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.72 Total: -14.86 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 1.21 Total: -33.61 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.90 Total: -22.10 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.23 Total: 21.53 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.08 -7.03 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761100793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.590 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds