Wall clock time and date at job start Wed Apr 1 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00016 * 2 1 4 4 H 1.48499 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47323 * 299.99736 * 3 2 1 6 6 H 1.48496 * 109.47178 * 60.00141 * 3 2 1 7 7 C 1.37874 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00411 * 359.97438 * 7 2 1 10 10 C 1.53115 * 109.52677 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.28042 * 177.62444 * 10 9 7 12 12 N 1.46846 * 109.51939 * 300.82207 * 11 10 9 13 13 C 1.46901 * 110.99851 * 185.84182 * 12 11 10 14 14 C 1.50702 * 109.47325 * 170.00168 * 13 12 11 15 15 O 1.21291 * 119.99976 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99937 * 180.02562 * 14 13 12 17 17 C 1.40089 * 120.00057 * 184.60095 * 16 14 13 18 18 C 1.39275 * 119.86144 * 144.85622 * 17 16 14 19 19 C 1.36604 * 120.57565 * 179.97438 * 18 17 16 20 20 C 1.39707 * 119.98186 * 0.04397 * 19 18 17 21 21 N 1.36021 * 133.37063 * 180.02562 * 20 19 18 22 22 C 1.30705 * 109.62342 * 179.97438 * 21 20 19 23 23 O 1.35312 * 125.02839 * 179.97438 * 22 21 20 24 24 N 1.36458 * 109.94443 * 359.78317 * 22 21 20 25 25 H 0.97000 * 126.37363 * 180.26552 * 24 22 21 26 26 C 1.38438 * 107.26136 * 0.34708 * 24 22 21 27 27 C 1.38538 * 119.86096 * 324.87962 * 17 16 14 28 28 C 1.46842 * 111.20122 * 61.74137 * 12 11 10 29 29 C 1.53032 * 109.52446 * 298.25658 * 28 12 11 30 30 H 0.96999 * 119.99953 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.52326 * 59.87219 * 9 7 2 32 32 H 1.09007 * 109.50144 * 57.68133 * 10 9 7 33 33 H 1.08997 * 109.50461 * 297.56607 * 10 9 7 34 34 H 1.08999 * 109.46325 * 180.80383 * 11 10 9 35 35 H 1.08995 * 109.45472 * 60.82917 * 11 10 9 36 36 H 1.08995 * 109.47411 * 49.99669 * 13 12 11 37 37 H 1.09006 * 109.47220 * 289.99792 * 13 12 11 38 38 H 0.97004 * 119.99897 * 4.59406 * 16 14 13 39 39 H 1.07999 * 119.71295 * 0.02562 * 18 17 16 40 40 H 1.07995 * 120.00734 * 180.02562 * 19 18 17 41 41 H 0.96698 * 114.00167 * 90.02627 * 23 22 21 42 42 H 1.08001 * 120.17402 * 359.97438 * 27 17 16 43 43 H 1.08997 * 109.46287 * 58.27543 * 28 12 11 44 44 H 1.09007 * 109.46466 * 178.23769 * 28 12 11 45 45 H 1.09003 * 109.50145 * 299.23851 * 29 28 12 46 46 H 1.09003 * 109.50294 * 179.12144 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4750 -4.9852 0.0593 12 7 0.6531 -5.0195 1.2758 13 6 0.0068 -6.3287 1.4377 14 6 -0.6224 -6.4128 2.8045 15 8 -0.5400 -5.4746 3.5688 16 7 -1.2757 -7.5309 3.1780 17 6 -1.9426 -7.5743 4.4092 18 6 -3.1325 -8.2881 4.5285 19 6 -3.7946 -8.3407 5.7222 20 6 -3.2791 -7.6739 6.8364 21 7 -3.6980 -7.5446 8.1241 22 6 -2.8498 -6.8055 8.7895 23 8 -2.9647 -6.4775 10.0972 24 7 -1.8291 -6.4171 7.9713 25 1 -1.0697 -5.8672 8.2202 26 6 -2.0797 -6.9523 6.7194 27 6 -1.4159 -6.9066 5.5029 28 6 -0.3405 -3.9383 1.2760 29 6 0.3751 -2.5859 1.2524 30 1 -0.4850 0.8400 -0.0004 31 1 0.6220 -2.5566 -0.8889 32 1 2.8990 -3.5842 0.8678 33 1 2.8428 -3.6322 -0.9113 34 1 2.1802 -5.8162 0.0739 35 1 0.8314 -5.0703 -0.8162 36 1 0.7516 -7.1173 1.3314 37 1 -0.7628 -6.4507 0.6754 38 1 -1.2842 -8.3055 2.5942 39 1 -3.5349 -8.8053 3.6700 40 1 -4.7164 -8.8972 5.8045 41 1 -2.5413 -7.1051 10.6988 42 1 -0.4930 -6.3536 5.4084 43 1 -0.9756 -4.0286 0.3948 44 1 -0.9540 -4.0090 2.1743 45 1 0.9998 -2.4892 2.1405 46 1 -0.3629 -1.7839 1.2368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782087819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:39 Heat of formation + Delta-G solvation = 13.105854 kcal Electronic energy + Delta-G solvation = -29305.099347 eV Core-core repulsion = 25196.017925 eV Total energy + Delta-G solvation = -4109.081421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.37501 -40.41228 -38.54837 -37.82383 -36.74155 -34.27857 -33.87861 -33.23299 -31.46077 -30.17011 -29.75121 -28.88262 -27.14181 -24.85005 -23.52563 -22.60487 -22.09714 -21.89324 -21.46503 -20.49310 -19.26013 -18.60726 -18.47067 -17.67353 -16.91008 -16.52255 -16.33654 -15.76611 -15.50772 -14.97756 -14.72518 -14.48906 -14.34040 -14.25024 -14.08778 -13.79021 -13.47747 -12.90643 -12.86056 -12.40709 -12.36299 -12.27412 -12.22055 -11.91812 -11.62503 -11.36002 -11.06837 -10.94058 -10.74111 -10.52376 -10.36452 -10.18993 -10.04906 -9.92395 -9.67062 -9.33824 -8.94552 -8.65052 -8.60212 -8.25229 -7.92852 -7.80947 -5.93348 -3.98502 0.62278 1.20313 2.06906 2.29742 2.63019 2.86561 3.32877 3.40924 3.44721 3.47876 3.61782 4.26186 4.38086 4.48651 4.67976 4.77851 4.99187 5.01222 5.14140 5.22710 5.23579 5.31636 5.37286 5.67368 5.72232 5.84711 5.91457 5.98580 6.09052 6.14296 6.21597 6.25279 6.34222 6.43698 6.64503 6.67313 6.74739 6.86901 7.05737 7.15413 7.22716 7.29109 7.46717 7.47459 7.60873 7.67553 7.86000 8.09781 8.12665 8.21157 8.52636 9.05325 9.65696 11.12909 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.002276 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.065659 B =12297.300360 C =13680.163472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.106 4.106 11 C 0.062 3.938 12 N -0.519 5.519 13 C 0.037 3.963 14 C 0.512 3.488 15 O -0.489 6.489 16 N -0.678 5.678 17 C 0.168 3.832 18 C -0.141 4.141 19 C -0.047 4.047 20 C 0.039 3.961 21 N -0.484 5.484 22 C 0.446 3.554 23 O -0.442 6.442 24 N -0.599 5.599 25 H 0.425 0.575 26 C 0.079 3.921 27 C -0.114 4.114 28 C 0.052 3.948 29 C -0.100 4.100 30 H 0.258 0.742 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.408 0.592 42 H 0.146 0.854 43 H 0.017 0.983 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -22.001 11.788 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.245 5.245 13 C -0.094 4.094 14 C 0.299 3.701 15 O -0.360 6.360 16 N -0.325 5.325 17 C 0.072 3.928 18 C -0.164 4.164 19 C -0.067 4.067 20 C -0.079 4.079 21 N -0.215 5.215 22 C 0.141 3.859 23 O -0.244 6.244 24 N -0.224 5.224 25 H 0.264 0.736 26 C -0.031 4.031 27 C -0.138 4.138 28 C -0.074 4.074 29 C -0.138 4.138 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.247 0.753 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.266 0.734 42 H 0.164 0.836 43 H 0.035 0.965 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.426 -20.948 12.889 25.186 hybrid contribution 1.201 0.783 -0.748 1.617 sum -4.224 -20.165 12.140 23.914 Atomic orbital electron populations 1.69892 1.05858 1.26154 1.51162 1.24975 0.94835 0.99014 0.95266 0.86583 0.80160 0.84054 0.77471 1.19853 1.21173 1.21101 1.21236 0.92882 0.90661 1.49954 0.92721 1.18715 0.92717 0.91749 0.94059 1.21674 0.98734 0.93561 1.00387 1.22161 0.95598 0.99694 0.89126 1.61775 1.23803 1.00314 1.38575 1.21920 0.98903 0.96037 0.92571 1.21032 0.77692 0.81444 0.89945 1.90718 1.55595 1.36479 1.53215 1.43620 1.53372 1.17029 1.18509 1.17259 0.92017 0.98821 0.84701 1.20451 0.94205 1.03448 0.98249 1.19757 0.99591 0.98109 0.89215 1.18795 0.94400 1.02669 0.92058 1.70638 1.27279 1.19025 1.04576 1.20299 0.85740 0.94695 0.85134 1.84864 1.78068 1.51649 1.09802 1.43412 1.23509 1.46350 1.09085 0.73573 1.18380 0.98624 0.99625 0.86521 1.19994 1.01872 1.04027 0.87896 1.22448 0.93045 0.92697 0.99245 1.21606 1.00118 0.92890 0.99212 0.93184 0.96206 0.92387 0.93015 0.92295 0.95569 0.88119 0.92099 0.75259 0.84681 0.84642 0.73364 0.83649 0.96456 0.90893 0.93754 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 11.37 55.43 0.63 -25.26 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -14.17 8.57 -34.44 -0.29 -14.46 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 10 C -0.11 -2.20 5.32 -26.65 -0.14 -2.34 16 11 C 0.06 1.05 5.46 -3.83 -0.02 1.03 16 12 N -0.52 -9.09 4.40 -236.12 -1.04 -10.13 16 13 C 0.04 0.47 5.45 -4.97 -0.03 0.44 16 14 C 0.51 6.77 7.35 -10.98 -0.08 6.69 16 15 O -0.49 -8.60 11.75 5.55 0.07 -8.54 16 16 N -0.68 -6.42 5.34 -9.80 -0.05 -6.47 16 17 C 0.17 1.82 6.30 -83.59 -0.53 1.30 16 18 C -0.14 -1.26 9.88 -39.79 -0.39 -1.65 16 19 C -0.05 -0.47 10.04 -39.62 -0.40 -0.86 16 20 C 0.04 0.48 7.22 -84.62 -0.61 -0.13 16 21 N -0.48 -6.21 11.31 -12.20 -0.14 -6.35 16 22 C 0.45 4.72 9.39 -88.90 -0.84 3.89 16 23 O -0.44 -3.34 13.63 -17.63 -0.24 -3.58 16 24 N -0.60 -6.00 6.27 -11.90 -0.07 -6.08 16 25 H 0.42 3.13 8.96 -40.82 -0.37 2.76 16 26 C 0.08 0.95 7.30 -83.89 -0.61 0.34 16 27 C -0.11 -1.43 8.71 -39.31 -0.34 -1.77 16 28 C 0.05 1.08 5.10 -3.84 -0.02 1.06 16 29 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.83 8.02 -51.93 -0.42 0.42 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.95 7.99 -51.93 -0.41 0.54 16 37 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.41 2.26 8.82 -40.82 -0.36 1.90 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.41 0.70 9.06 45.56 0.41 1.12 16 42 H 0.15 2.03 6.21 -52.49 -0.33 1.70 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 1.53 5.78 -51.93 -0.30 1.23 16 45 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.09 2.51 6.17 -51.93 -0.32 2.19 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -36.19 373.77 -10.41 -46.59 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.44 Total: 4.08 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -4.73 Total: -6.53 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.67 Total: -54.29 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.18 Total: -12.12 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.19 -10.41 -46.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782087819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.697 kcal (2) G-P(sol) polarization free energy of solvation -36.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds