Wall clock time and date at job start Wed Apr 1 2020 02:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00146 * 2 1 4 4 C 1.53000 * 109.46937 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47431 * 64.99899 * 4 3 2 6 6 C 1.34775 * 120.00029 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00069 * 359.72932 * 6 5 4 8 8 C 1.50708 * 120.00044 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.46897 * 299.72569 * 8 6 5 10 10 C 1.47201 * 109.46741 * 59.72787 * 8 6 5 11 11 N 6.06773 * 125.78605 * 283.93918 * 2 1 3 12 12 C 1.50701 * 109.47155 * 179.72690 * 8 6 5 13 13 O 1.20760 * 120.00070 * 335.00339 * 12 8 6 14 14 C 1.50697 * 119.99659 * 155.00151 * 12 8 6 15 15 C 1.52999 * 109.46787 * 180.02562 * 14 12 8 16 16 H 1.08997 * 109.47615 * 55.00183 * 15 14 12 17 17 C 1.50697 * 109.47449 * 294.99685 * 15 14 12 18 18 H 1.08000 * 119.99899 * 325.84350 * 17 15 14 19 19 C 1.37879 * 120.00059 * 145.83211 * 17 15 14 20 20 N 1.31513 * 120.00149 * 6.12372 * 19 17 15 21 21 Si 1.86802 * 119.99862 * 186.11954 * 19 17 15 22 22 H 1.48507 * 109.46901 * 60.00615 * 21 19 17 23 23 H 1.48498 * 109.46955 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47314 * 300.00222 * 21 19 17 25 25 C 1.50702 * 109.46934 * 175.00108 * 15 14 12 26 26 C 1.38233 * 120.00401 * 63.46548 * 25 15 14 27 27 C 1.38232 * 120.00054 * 179.80858 * 26 25 15 28 28 C 1.38235 * 120.00237 * 0.39798 * 27 26 25 29 29 C 1.38226 * 119.99771 * 359.85612 * 28 27 26 30 30 C 1.38236 * 119.99960 * 243.73730 * 25 15 14 31 31 H 1.08994 * 109.47739 * 300.00308 * 1 2 3 32 32 H 1.09002 * 109.46715 * 60.00673 * 1 2 3 33 33 H 1.09003 * 109.47236 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46839 * 59.99692 * 3 2 1 35 35 H 1.08991 * 109.47010 * 299.99589 * 3 2 1 36 36 H 1.09003 * 109.47098 * 304.99561 * 4 3 2 37 37 H 1.09005 * 109.46999 * 185.00212 * 4 3 2 38 38 H 0.96999 * 120.00260 * 359.97438 * 5 4 3 39 39 H 1.09005 * 109.47114 * 299.99632 * 14 12 8 40 40 H 1.09001 * 109.47498 * 59.99922 * 14 12 8 41 41 H 0.96991 * 120.00265 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99660 * 359.97438 * 26 25 15 43 43 H 1.08007 * 119.99525 * 180.23127 * 27 26 25 44 44 H 1.07997 * 119.99878 * 179.83264 * 28 27 26 45 45 H 1.08002 * 119.99962 * 179.97438 * 29 28 27 46 46 H 1.08004 * 120.00241 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 5.2895 0.3558 -1.4736 7 8 6.1059 0.6870 -0.6401 8 6 5.7434 -0.2833 -2.7607 9 1 5.3047 -1.2773 -2.8473 10 6 5.3113 0.5447 -3.8986 11 7 4.9771 1.1857 -4.7772 12 6 7.2462 -0.3955 -2.7632 13 8 7.9093 0.3599 -2.0938 14 6 7.9216 -1.4505 -3.6011 15 6 9.4378 -1.3489 -3.4238 16 1 9.6849 -1.4117 -2.3641 17 6 9.9211 -0.0323 -3.9752 18 1 9.4383 0.4015 -4.8384 19 6 10.9794 0.6186 -3.3775 20 7 11.6441 0.0364 -2.4034 21 14 11.4692 2.3275 -3.9513 22 1 10.3262 3.2577 -3.7680 23 1 12.6276 2.8043 -3.1538 24 1 11.8428 2.2792 -5.3877 25 6 10.1068 -2.4789 -4.1633 26 6 9.9970 -2.5659 -5.5385 27 6 10.6139 -3.6002 -6.2171 28 6 11.3337 -4.5522 -5.5197 29 6 11.4390 -4.4683 -4.1440 30 6 10.8254 -3.4318 -3.4657 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6887 1.8463 -0.8899 36 1 3.8507 0.5684 0.8428 37 1 3.9785 2.1764 0.0903 38 1 3.3240 0.3025 -1.9191 39 1 7.5843 -2.4373 -3.2839 40 1 7.6670 -1.2993 -4.6501 41 1 12.3888 0.4942 -1.9832 42 1 9.4315 -1.8241 -6.0830 43 1 10.5312 -3.6659 -7.2920 44 1 11.8134 -5.3618 -6.0496 45 1 12.0011 -5.2124 -3.5990 46 1 10.9079 -3.3662 -2.3908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796631803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:48 Heat of formation + Delta-G solvation = -59.851091 kcal Electronic energy + Delta-G solvation = -29348.941442 eV Core-core repulsion = 25204.403619 eV Total energy + Delta-G solvation = -4144.537823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43022 -38.80755 -38.32455 -37.79538 -36.47771 -34.83888 -34.02532 -32.02409 -31.39387 -29.99624 -29.82019 -28.65946 -26.68839 -25.62864 -23.35404 -22.72237 -21.63325 -21.16364 -20.34216 -19.27926 -18.37309 -17.15169 -16.92359 -16.71038 -16.45021 -16.15066 -15.70485 -15.15599 -15.13872 -14.74120 -14.52019 -14.10922 -14.05494 -13.97446 -13.72342 -13.47125 -13.21826 -12.85904 -12.71997 -12.54281 -12.52004 -12.21117 -12.15622 -12.09948 -11.97130 -11.67444 -11.62931 -11.56978 -10.85557 -10.73189 -10.58572 -10.25185 -10.20799 -10.07876 -9.98221 -9.46263 -9.23534 -9.10958 -8.82320 -8.34405 -8.02855 -7.59670 -5.96277 -3.97730 2.24575 2.30024 2.30939 2.35737 2.64780 2.90534 3.03615 3.31137 3.39327 3.43202 3.47803 3.93191 4.35633 4.47488 4.50896 4.59828 4.73994 4.76816 4.87392 4.93681 4.98126 5.00151 5.24590 5.37314 5.39556 5.58338 5.67888 5.74121 5.85145 5.87802 6.07454 6.13171 6.20795 6.29463 6.43100 6.54501 6.66168 6.82671 6.92268 7.05906 7.27097 7.32856 7.35697 7.43541 7.52874 7.83371 7.95139 8.03748 8.07305 8.27307 8.36106 9.03602 9.65934 11.13233 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.002892 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.946583 B = 9679.317356 C =10826.112098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.048 3.952 4 C 0.123 3.877 5 N -0.727 5.727 6 C 0.525 3.475 7 O -0.482 6.482 8 C -0.068 4.068 9 H 0.159 0.841 10 C 0.220 3.780 11 N -0.402 5.402 12 C 0.356 3.644 13 O -0.347 6.347 14 C -0.145 4.145 15 C 0.075 3.925 16 H 0.074 0.926 17 C -0.505 4.505 18 H 0.051 0.949 19 C 0.081 3.919 20 N -0.877 5.877 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.279 1.279 25 C -0.021 4.021 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.128 4.128 30 C -0.118 4.118 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.402 0.598 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.261 0.739 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.555 -4.895 2.571 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.382 5.382 6 C 0.306 3.694 7 O -0.353 6.353 8 C -0.093 4.093 9 H 0.176 0.824 10 C -0.099 4.099 11 N -0.078 5.078 12 C 0.220 3.780 13 O -0.209 6.209 14 C -0.183 4.183 15 C 0.057 3.943 16 H 0.092 0.908 17 C -0.542 4.542 18 H 0.069 0.931 19 C -0.123 4.123 20 N -0.513 5.513 21 Si 0.711 3.289 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.021 4.021 26 C -0.133 4.133 27 C -0.150 4.150 28 C -0.173 4.173 29 C -0.146 4.146 30 C -0.136 4.136 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.237 0.763 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.771 -3.357 2.438 19.224 hybrid contribution -0.109 0.802 -0.481 0.942 sum -18.879 -2.555 1.957 19.151 Atomic orbital electron populations 1.22765 0.80766 1.03012 1.00039 1.87939 1.19898 1.27414 1.95448 1.22834 0.93155 0.85448 1.01483 1.21398 0.91671 0.99582 0.87416 1.45877 1.07240 1.64143 1.20963 1.19625 0.82522 0.79656 0.87549 1.90900 1.51945 1.47254 1.45192 1.19880 1.02456 0.99635 0.87370 0.82391 1.27811 0.94084 0.94112 0.93872 1.81303 1.08453 1.08338 1.09753 1.23753 0.85335 0.86275 0.82675 1.90592 1.64315 1.35831 1.30158 1.22184 1.00414 0.96260 0.99441 1.17891 0.86224 0.91576 0.98649 0.90801 1.20700 1.16265 1.03234 1.14044 0.93094 1.24805 0.95902 0.97084 0.94484 1.69885 1.20042 1.37337 1.24037 0.86796 0.78048 0.85535 0.78487 1.20211 1.21263 1.20434 1.20688 0.94924 0.92865 0.93664 1.20944 1.00546 0.97188 0.94643 1.20972 0.99345 0.96019 0.98650 1.20792 1.02234 0.99872 0.94433 1.20982 1.00476 0.98796 0.94358 1.21092 0.98525 0.94188 0.99827 0.93979 0.93995 0.89421 0.91402 0.92465 0.90061 0.89632 0.76340 0.90413 0.89815 0.92895 0.86938 0.87715 0.87845 0.87648 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.10 10.65 -35.23 -0.38 -3.48 16 3 C 0.05 0.32 6.07 37.16 0.23 0.55 16 4 C 0.12 1.13 6.06 -4.04 -0.02 1.10 16 5 N -0.73 -7.54 5.39 -60.29 -0.33 -7.87 16 6 C 0.52 7.46 7.08 -10.98 -0.08 7.38 16 7 O -0.48 -9.21 14.52 -18.21 -0.26 -9.47 16 8 C -0.07 -0.88 2.85 -95.71 -0.27 -1.15 16 9 H 0.16 1.23 8.14 -51.93 -0.42 0.81 16 10 C 0.22 3.12 14.38 -20.70 -0.30 2.82 16 11 N -0.40 -6.42 18.55 42.23 0.78 -5.63 16 12 C 0.36 6.50 5.89 -29.04 -0.17 6.33 16 13 O -0.35 -8.22 13.31 -17.76 -0.24 -8.46 16 14 C -0.15 -2.57 4.88 -27.89 -0.14 -2.71 16 15 C 0.08 1.72 1.67 -92.92 -0.16 1.57 16 16 H 0.07 1.93 6.98 -51.93 -0.36 1.57 16 17 C -0.51 -13.29 6.37 -34.44 -0.22 -13.51 16 18 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 19 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 20 N -0.88 -25.43 12.87 55.43 0.71 -24.72 16 21 Si 0.88 22.34 29.54 -169.99 -5.02 17.32 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 26 C -0.12 -2.28 8.86 -39.59 -0.35 -2.63 16 27 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 28 C -0.16 -2.66 10.05 -39.59 -0.40 -3.06 16 29 C -0.13 -2.31 10.05 -39.59 -0.40 -2.71 16 30 C -0.12 -2.43 9.67 -39.58 -0.38 -2.81 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 3.26 8.33 -40.82 -0.34 2.92 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.38 7.78 -51.93 -0.40 0.98 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.11 2.16 7.76 -52.48 -0.41 1.75 16 43 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 44 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.11 2.36 7.95 -52.48 -0.42 1.94 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -35.44 403.69 -7.73 -43.18 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.55 Total: 2.12 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.54 Total: -9.06 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 1.17 Total: -38.22 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.88 Total: -21.41 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.44 -7.73 -43.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796631803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.676 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds