Wall clock time and date at job start Wed Apr 1 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00146 * 2 1 4 4 C 1.53000 * 109.46937 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47431 * 64.99899 * 4 3 2 6 6 C 1.34775 * 120.00029 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00069 * 359.72932 * 6 5 4 8 8 C 1.50708 * 120.00044 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.46897 * 299.72569 * 8 6 5 10 10 C 1.47201 * 109.46741 * 59.72787 * 8 6 5 11 11 N 6.06773 * 125.78605 * 283.93918 * 2 1 3 12 12 C 1.50701 * 109.47155 * 179.72690 * 8 6 5 13 13 O 1.20760 * 120.00070 * 335.00339 * 12 8 6 14 14 C 1.50697 * 119.99659 * 155.00151 * 12 8 6 15 15 C 1.52999 * 109.46787 * 180.02562 * 14 12 8 16 16 H 1.08997 * 109.47615 * 55.00183 * 15 14 12 17 17 C 1.50697 * 109.47449 * 294.99685 * 15 14 12 18 18 H 1.08000 * 119.99899 * 325.84350 * 17 15 14 19 19 C 1.37879 * 120.00059 * 145.83211 * 17 15 14 20 20 N 1.31513 * 120.00149 * 6.12372 * 19 17 15 21 21 Si 1.86802 * 119.99862 * 186.11954 * 19 17 15 22 22 H 1.48507 * 109.46901 * 60.00615 * 21 19 17 23 23 H 1.48498 * 109.46955 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47314 * 300.00222 * 21 19 17 25 25 C 1.50702 * 109.46934 * 175.00108 * 15 14 12 26 26 C 1.38233 * 120.00401 * 63.46548 * 25 15 14 27 27 C 1.38232 * 120.00054 * 179.80858 * 26 25 15 28 28 C 1.38235 * 120.00237 * 0.39798 * 27 26 25 29 29 C 1.38226 * 119.99771 * 359.85612 * 28 27 26 30 30 C 1.38236 * 119.99960 * 243.73730 * 25 15 14 31 31 H 1.08994 * 109.47739 * 300.00308 * 1 2 3 32 32 H 1.09002 * 109.46715 * 60.00673 * 1 2 3 33 33 H 1.09003 * 109.47236 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46839 * 59.99692 * 3 2 1 35 35 H 1.08991 * 109.47010 * 299.99589 * 3 2 1 36 36 H 1.09003 * 109.47098 * 304.99561 * 4 3 2 37 37 H 1.09005 * 109.46999 * 185.00212 * 4 3 2 38 38 H 0.96999 * 120.00260 * 359.97438 * 5 4 3 39 39 H 1.09005 * 109.47114 * 299.99632 * 14 12 8 40 40 H 1.09001 * 109.47498 * 59.99922 * 14 12 8 41 41 H 0.96991 * 120.00265 * 179.97438 * 20 19 17 42 42 H 1.08005 * 119.99660 * 359.97438 * 26 25 15 43 43 H 1.08007 * 119.99525 * 180.23127 * 27 26 25 44 44 H 1.07997 * 119.99878 * 179.83264 * 28 27 26 45 45 H 1.08002 * 119.99962 * 179.97438 * 29 28 27 46 46 H 1.08004 * 120.00241 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 5.2895 0.3558 -1.4736 7 8 6.1059 0.6870 -0.6401 8 6 5.7434 -0.2833 -2.7607 9 1 5.3047 -1.2773 -2.8473 10 6 5.3113 0.5447 -3.8986 11 7 4.9771 1.1857 -4.7772 12 6 7.2462 -0.3955 -2.7632 13 8 7.9093 0.3599 -2.0938 14 6 7.9216 -1.4505 -3.6011 15 6 9.4378 -1.3489 -3.4238 16 1 9.6849 -1.4117 -2.3641 17 6 9.9211 -0.0323 -3.9752 18 1 9.4383 0.4015 -4.8384 19 6 10.9794 0.6186 -3.3775 20 7 11.6441 0.0364 -2.4034 21 14 11.4692 2.3275 -3.9513 22 1 10.3262 3.2577 -3.7680 23 1 12.6276 2.8043 -3.1538 24 1 11.8428 2.2792 -5.3877 25 6 10.1068 -2.4789 -4.1633 26 6 9.9970 -2.5659 -5.5385 27 6 10.6139 -3.6002 -6.2171 28 6 11.3337 -4.5522 -5.5197 29 6 11.4390 -4.4683 -4.1440 30 6 10.8254 -3.4318 -3.4657 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6887 1.8463 -0.8899 36 1 3.8507 0.5684 0.8428 37 1 3.9785 2.1764 0.0903 38 1 3.3240 0.3025 -1.9191 39 1 7.5843 -2.4373 -3.2839 40 1 7.6670 -1.2993 -4.6501 41 1 12.3888 0.4942 -1.9832 42 1 9.4315 -1.8241 -6.0830 43 1 10.5312 -3.6659 -7.2920 44 1 11.8134 -5.3618 -6.0496 45 1 12.0011 -5.2124 -3.5990 46 1 10.9079 -3.3662 -2.3908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796631803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:47 Heat of formation + Delta-G solvation = -82.490156 kcal Electronic energy + Delta-G solvation = -29349.923146 eV Core-core repulsion = 25204.403619 eV Total energy + Delta-G solvation = -4145.519527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67397 -40.13802 -39.47540 -38.76371 -37.71667 -35.88734 -35.70137 -33.55339 -32.96446 -31.45261 -30.76400 -29.96797 -27.55511 -27.07377 -24.74640 -23.75737 -23.10152 -22.23877 -21.76933 -20.78730 -19.57765 -18.41325 -18.09962 -17.86194 -17.55017 -17.30817 -16.75724 -16.53166 -16.19531 -15.90409 -15.83635 -15.55113 -15.48424 -15.25965 -15.01417 -14.76579 -14.43218 -14.16222 -13.96371 -13.92106 -13.74154 -13.56141 -13.47845 -13.23686 -13.12669 -13.09121 -12.84564 -12.67109 -12.53776 -12.46184 -12.13243 -11.79039 -11.66484 -11.30304 -11.22084 -10.94089 -10.64883 -10.55660 -10.22139 -10.16411 -9.49435 -9.13971 -8.06381 -6.09169 0.82642 0.88544 0.96325 1.14423 1.32919 1.37550 1.41050 1.49743 1.64854 2.03357 2.43609 2.76367 2.80319 3.06898 3.21074 3.36981 3.55085 3.92461 4.08226 4.17492 4.30012 4.38141 4.42711 4.43498 4.47682 4.57434 4.60788 4.61406 4.64398 4.70890 4.83751 4.87379 4.94161 4.98488 5.06571 5.31068 5.33620 5.42379 5.57309 5.65939 5.79949 5.88628 5.99880 6.18668 6.19219 6.19836 6.36202 6.44603 6.50680 6.84143 7.01417 7.10434 7.54755 9.02361 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.002892 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.946583 B = 9679.317356 C =10826.112098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.055 3.945 4 C 0.117 3.883 5 N -0.707 5.707 6 C 0.524 3.476 7 O -0.539 6.539 8 C -0.053 4.053 9 H 0.221 0.779 10 C 0.238 3.762 11 N -0.428 5.428 12 C 0.357 3.643 13 O -0.412 6.412 14 C -0.145 4.145 15 C 0.076 3.924 16 H 0.029 0.971 17 C -0.495 4.495 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.910 5.910 21 Si 0.924 3.076 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.268 1.268 25 C -0.043 4.043 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.148 4.148 29 C -0.128 4.128 30 C -0.141 4.141 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.417 0.583 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.255 0.745 42 H 0.114 0.886 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.643 -6.784 0.408 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.022 4.022 4 C -0.006 4.006 5 N -0.361 5.361 6 C 0.306 3.694 7 O -0.414 6.414 8 C -0.078 4.078 9 H 0.238 0.762 10 C -0.080 4.080 11 N -0.105 5.105 12 C 0.225 3.775 13 O -0.278 6.278 14 C -0.182 4.182 15 C 0.057 3.943 16 H 0.048 0.952 17 C -0.533 4.533 18 H 0.064 0.936 19 C -0.170 4.170 20 N -0.549 5.549 21 Si 0.751 3.249 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.193 1.193 25 C -0.044 4.044 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.166 4.166 29 C -0.146 4.146 30 C -0.159 4.159 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.254 0.746 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.132 0.868 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.934 -5.259 0.225 21.585 hybrid contribution 0.457 1.286 0.166 1.374 sum -20.477 -3.973 0.391 20.862 Atomic orbital electron populations 1.22919 0.79318 1.03821 1.00962 1.87895 1.21502 1.27961 1.95669 1.22790 0.90938 0.85443 1.02983 1.21511 0.93771 0.98903 0.86386 1.45780 1.06199 1.62574 1.21578 1.19787 0.83172 0.79182 0.87259 1.90897 1.53603 1.49830 1.47063 1.19797 0.98850 1.02632 0.86506 0.76231 1.27782 0.93376 0.93408 0.93409 1.81334 1.09327 1.09108 1.10700 1.24258 0.87612 0.84842 0.80789 1.90597 1.66427 1.38059 1.32724 1.22171 0.96977 0.98406 1.00625 1.17704 0.89795 0.90843 0.95969 0.95222 1.21026 1.14807 1.04556 1.12879 0.93604 1.25407 0.96836 0.99566 0.95214 1.70008 1.20922 1.38248 1.25753 0.86149 0.77289 0.82794 0.78627 1.21252 1.21286 1.19259 1.20529 0.96055 0.93217 0.94582 1.21026 1.01440 0.98264 0.93815 1.21349 0.98011 0.94877 1.00341 1.21238 1.01052 1.00332 0.93980 1.21279 0.99792 0.98268 0.95289 1.21114 0.99809 0.95692 0.99319 0.93100 0.93015 0.88773 0.89649 0.91152 0.91183 0.90136 0.74632 0.86425 0.87909 0.93638 0.86789 0.84458 0.84116 0.85144 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.74 10.65 -148.98 -1.59 -7.32 16 3 C 0.06 0.63 6.07 71.98 0.44 1.07 16 4 C 0.12 2.09 6.06 86.38 0.52 2.61 16 5 N -0.71 -13.72 5.39 -463.06 -2.50 -16.21 16 6 C 0.52 14.62 7.08 87.66 0.62 15.24 16 7 O -0.54 -21.39 14.52 19.69 0.29 -21.10 16 8 C -0.05 -1.28 2.85 -14.09 -0.04 -1.32 16 9 H 0.22 2.47 8.14 -2.39 -0.02 2.45 16 10 C 0.24 6.32 14.38 89.42 1.29 7.60 16 11 N -0.43 -12.97 18.55 20.03 0.37 -12.60 16 12 C 0.36 13.04 5.89 29.10 0.17 13.21 16 13 O -0.41 -20.43 13.31 21.27 0.28 -20.15 16 14 C -0.14 -5.00 4.88 29.85 0.15 -4.85 16 15 C 0.08 3.55 1.67 -12.29 -0.02 3.53 16 16 H 0.03 1.64 6.98 -2.39 -0.02 1.63 16 17 C -0.49 -26.74 6.37 25.60 0.16 -26.58 16 18 H 0.05 2.45 7.82 -2.91 -0.02 2.43 16 19 C 0.03 1.71 5.45 84.66 0.46 2.17 16 20 N -0.91 -55.55 12.87 21.45 0.28 -55.27 16 21 Si 0.92 47.19 29.54 68.60 2.03 49.22 16 22 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 23 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 24 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 25 C -0.04 -1.86 4.77 -19.87 -0.09 -1.96 16 26 C -0.13 -4.83 8.86 22.27 0.20 -4.64 16 27 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 28 C -0.15 -4.51 10.05 22.27 0.22 -4.29 16 29 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 30 C -0.14 -5.84 9.67 22.27 0.22 -5.62 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.42 5.70 8.33 -92.71 -0.77 4.93 16 39 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 40 H 0.10 3.19 7.78 -2.39 -0.02 3.17 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.11 4.19 7.76 -2.91 -0.02 4.17 16 43 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 46 H 0.10 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -83.24 403.69 5.37 -77.86 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.23 Total: 15.94 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.99 Total: -10.37 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.85 Total: -84.08 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.02 Total: -48.57 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -83.24 5.37 -77.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796631803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.625 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds