Wall clock time and date at job start Wed Apr 1 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99846 * 2 1 4 4 H 1.48499 * 109.47252 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47350 * 29.99709 * 3 2 1 6 6 H 1.48497 * 109.47129 * 149.99741 * 3 2 1 7 7 C 1.37872 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47333 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47318 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47370 * 304.99896 * 11 10 9 13 13 N 1.46904 * 109.47224 * 65.00044 * 11 10 9 14 14 C 1.50701 * 109.47495 * 184.99481 * 11 10 9 15 15 O 1.21279 * 120.00220 * 260.00223 * 14 11 10 16 16 N 1.34784 * 119.99815 * 79.99801 * 14 11 10 17 17 C 1.46496 * 120.00244 * 180.02562 * 16 14 11 18 18 C 1.50698 * 109.47241 * 179.97438 * 17 16 14 19 19 N 1.31130 * 126.54646 * 89.99980 * 18 17 16 20 20 C 1.34492 * 105.61399 * 179.97438 * 19 18 17 21 21 C 1.50700 * 126.29104 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47086 * 269.98022 * 21 20 19 23 23 C 1.38233 * 119.99663 * 269.72253 * 22 21 20 24 24 C 1.38242 * 119.99821 * 179.76600 * 23 22 21 25 25 C 1.38226 * 120.00083 * 0.51026 * 24 23 22 26 26 C 1.38242 * 120.00090 * 359.74321 * 25 24 23 27 27 C 1.38226 * 120.00381 * 89.99879 * 22 21 20 28 28 N 1.29954 * 107.42242 * 359.97438 * 20 19 18 29 29 O 1.21293 * 110.25286 * 0.02562 * 28 20 19 30 30 H 0.97002 * 120.00029 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46951 * 59.99357 * 9 7 2 32 32 H 1.09006 * 109.46943 * 299.99970 * 9 7 2 33 33 H 1.08996 * 109.47642 * 59.99057 * 10 9 7 34 34 H 1.09006 * 109.47047 * 299.99864 * 10 9 7 35 35 H 1.00903 * 110.99412 * 296.04660 * 13 11 10 36 36 H 1.00899 * 111.00310 * 59.99315 * 13 11 10 37 37 H 0.96998 * 119.99509 * 0.02562 * 16 14 11 38 38 H 1.09000 * 109.47009 * 60.00134 * 17 16 14 39 39 H 1.08997 * 109.47208 * 300.00394 * 17 16 14 40 40 H 1.09005 * 109.47013 * 29.97723 * 21 20 19 41 41 H 1.08996 * 109.47115 * 149.97626 * 21 20 19 42 42 H 1.08002 * 120.00291 * 359.97438 * 23 22 21 43 43 H 1.08007 * 119.99410 * 180.23031 * 24 23 22 44 44 H 1.08003 * 120.00462 * 179.72526 * 25 24 23 45 45 H 1.07990 * 120.00395 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.00148 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0025 12 1 0.7879 -5.0064 0.8440 13 7 0.7292 -5.1194 -1.2530 14 6 2.4549 -6.1297 0.1274 15 8 2.7871 -6.7539 -0.8579 16 7 2.9574 -6.4579 1.3343 17 6 3.9052 -7.5684 1.4558 18 6 4.3115 -7.7264 2.8983 19 7 3.7211 -8.4753 3.7983 20 6 4.4255 -8.3033 4.9310 21 6 4.1473 -8.9533 6.2619 22 6 3.2155 -8.0804 7.0623 23 6 3.7287 -7.1150 7.9081 24 6 2.8739 -6.3109 8.6387 25 6 1.5061 -6.4793 8.5314 26 6 0.9929 -7.4482 7.6895 27 6 1.8477 -8.2487 6.9550 28 7 5.3908 -7.4744 4.6668 29 8 5.3430 -7.1309 3.5045 30 1 -0.4850 0.8401 0.0004 31 1 0.6247 -2.5570 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.8714 -3.6039 0.8921 34 1 2.8727 -3.6047 -0.8878 35 1 0.0244 -4.4014 -1.3300 36 1 1.3493 -5.1042 -2.0488 37 1 2.6914 -5.9588 2.1223 38 1 4.7877 -7.3606 0.8508 39 1 3.4343 -8.4877 1.1077 40 1 3.6844 -9.9270 6.1009 41 1 5.0828 -9.0813 6.8063 42 1 4.7975 -6.9867 7.9957 43 1 3.2749 -5.5542 9.2968 44 1 0.8383 -5.8541 9.1056 45 1 -0.0756 -7.5801 7.6060 46 1 1.4467 -9.0063 6.2978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818095053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:33 Heat of formation + Delta-G solvation = 21.811110 kcal Electronic energy + Delta-G solvation = -28541.606649 eV Core-core repulsion = 24432.902716 eV Total energy + Delta-G solvation = -4108.703933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.80212 -40.99842 -40.24760 -37.44570 -37.15393 -36.41615 -34.82950 -34.38532 -32.86626 -31.83794 -31.66739 -29.53879 -28.67108 -27.67205 -25.51780 -24.78674 -23.57657 -23.20281 -22.43604 -21.91578 -21.27045 -19.35334 -19.13528 -18.57806 -18.10434 -17.70159 -17.41448 -16.61183 -16.33699 -16.27148 -16.14672 -16.02027 -15.71880 -15.49916 -15.09083 -14.82229 -14.59350 -14.39420 -14.33785 -14.22108 -13.89550 -13.61790 -13.41784 -13.38185 -13.13343 -12.94229 -12.89697 -12.67705 -12.51084 -12.25228 -12.13404 -11.92643 -11.79195 -11.73537 -11.29888 -11.24735 -10.76696 -10.55299 -10.33723 -9.87957 -9.78071 -9.63008 -8.21003 -6.30948 -0.17160 0.28583 0.44443 1.00027 1.39873 1.40466 1.48963 1.50628 1.54868 2.13646 2.40128 2.43119 2.76221 3.01213 3.12943 3.61469 3.71903 3.77135 3.78069 3.92271 4.10132 4.12571 4.18367 4.25158 4.26248 4.30845 4.38684 4.49201 4.56346 4.65992 4.68357 4.71984 4.78824 4.85627 5.05542 5.09584 5.10692 5.12711 5.48339 5.50362 5.57805 5.58027 5.67419 5.82042 6.04406 6.05704 6.22125 6.32751 6.50970 6.85040 6.96227 7.07715 7.38222 8.89683 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008337 B = 0.002516 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3357.787144 B =11124.119381 C =12919.792181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.122 4.122 11 C 0.082 3.918 12 H 0.108 0.892 13 N -0.829 5.829 14 C 0.540 3.460 15 O -0.555 6.555 16 N -0.721 5.721 17 C 0.221 3.779 18 C 0.175 3.825 19 N -0.469 5.469 20 C 0.176 3.824 21 C 0.014 3.986 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.131 4.131 27 C -0.113 4.113 28 N -0.391 5.391 29 O 0.082 5.918 30 H 0.263 0.737 31 H 0.004 0.996 32 H 0.000 1.000 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.353 0.647 36 H 0.346 0.654 37 H 0.412 0.588 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -19.440 15.848 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.162 4.162 11 C -0.034 4.034 12 H 0.126 0.874 13 N -0.361 5.361 14 C 0.327 3.673 15 O -0.432 6.432 16 N -0.377 5.377 17 C 0.096 3.904 18 C -0.047 4.047 19 N -0.204 5.204 20 C -0.097 4.097 21 C -0.025 4.025 22 C -0.102 4.102 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.149 4.149 27 C -0.131 4.131 28 N -0.098 5.098 29 O 0.023 5.977 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.248 0.752 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.227 -20.553 16.174 27.134 hybrid contribution 0.451 2.417 -0.029 2.459 sum 7.678 -18.136 16.145 25.467 Atomic orbital electron populations 1.70061 1.07450 1.27708 1.51434 1.25848 0.95714 1.02918 0.94834 0.85571 0.78757 0.79109 0.78372 1.20030 1.20804 1.19035 1.21641 0.93404 0.92486 1.50690 0.92632 1.18974 0.94081 0.92031 0.95732 1.22149 0.98796 0.93583 1.01688 1.21387 0.94726 0.91088 0.96159 0.87390 1.58763 1.18369 1.55692 1.03251 1.20563 0.80561 0.84004 0.82148 1.90660 1.60702 1.54002 1.37841 1.45774 1.46645 1.34877 1.10366 1.19711 0.95413 0.93183 0.82065 1.28743 0.86140 0.90860 0.98915 1.71943 1.26900 1.22045 0.99485 1.26142 0.89382 0.96322 0.97861 1.19051 1.01201 0.97617 0.84584 1.19656 0.94141 0.98177 0.98275 1.21292 1.00557 0.95322 0.96540 1.21446 0.93861 0.99691 0.99968 1.21534 0.95819 0.98195 0.98756 1.21473 1.00868 0.95874 0.96636 1.21305 0.92719 0.99996 0.99047 1.74676 1.23273 1.16557 0.95254 1.85334 1.42734 1.53192 1.16407 0.92775 0.97747 0.98164 0.91646 0.93100 0.83160 0.84074 0.75176 0.86094 0.85758 0.85915 0.86527 0.85265 0.84431 0.84321 0.84340 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -29.44 9.11 25.60 0.23 -29.21 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.39 4.74 29.85 0.14 1.53 16 10 C -0.12 -4.51 4.78 30.59 0.15 -4.36 16 11 C 0.08 2.54 3.21 44.17 0.14 2.68 16 12 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 13 N -0.83 -26.66 8.94 -171.80 -1.54 -28.20 16 14 C 0.54 15.40 7.08 87.66 0.62 16.02 16 15 O -0.56 -18.66 16.25 -3.03 -0.05 -18.70 16 16 N -0.72 -15.63 5.55 -466.79 -2.59 -18.22 16 17 C 0.22 3.89 6.30 85.63 0.54 4.43 16 18 C 0.17 3.39 7.88 88.38 0.70 4.09 16 19 N -0.47 -9.80 11.55 -303.19 -3.50 -13.31 16 20 C 0.18 3.54 7.45 138.46 1.03 4.57 16 21 C 0.01 0.20 5.97 29.10 0.17 0.37 16 22 C -0.10 -1.71 5.11 -19.87 -0.10 -1.81 16 23 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 27 C -0.11 -1.90 9.70 22.27 0.22 -1.68 16 28 N -0.39 -8.90 12.16 -60.32 -0.73 -9.63 16 29 O 0.08 1.79 11.31 74.85 0.85 2.64 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.00 0.21 6.87 -2.39 -0.02 0.20 16 32 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.35 11.69 7.55 -89.69 -0.68 11.01 16 36 H 0.35 11.21 8.58 -89.69 -0.77 10.44 16 37 H 0.41 8.22 8.46 -92.71 -0.78 7.44 16 38 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.12 1.34 8.09 -2.38 -0.02 1.32 16 41 H 0.12 1.30 8.08 -2.39 -0.02 1.28 16 42 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.14 1.74 8.06 -2.92 -0.02 1.72 16 46 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -68.30 399.36 -1.26 -69.56 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -1.19 Total: 34.41 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 5.19 Total: -10.03 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -8.08 Total: -122.99 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.80 Total: -16.07 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.30 -1.26 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818095053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.368 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds