Wall clock time and date at job start Wed Apr 1 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00026 * 2 1 4 4 H 1.48503 * 109.46810 * 269.99844 * 3 2 1 5 5 H 1.48496 * 109.47235 * 29.99821 * 3 2 1 6 6 H 1.48500 * 109.47060 * 149.99990 * 3 2 1 7 7 C 1.37882 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99811 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99806 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.50459 * 59.92634 * 9 7 2 11 11 C 1.53121 * 109.50569 * 299.80721 * 9 7 2 12 12 C 1.53117 * 109.16136 * 182.40887 * 11 9 7 13 13 C 1.53036 * 109.27928 * 57.65289 * 12 11 9 14 14 N 1.46848 * 109.52460 * 300.82019 * 13 12 11 15 15 C 1.46891 * 111.00096 * 185.84237 * 14 13 12 16 16 C 1.50696 * 109.47146 * 169.47050 * 15 14 13 17 17 O 1.21292 * 120.00407 * 353.73103 * 16 15 14 18 18 N 1.34784 * 120.00140 * 173.72992 * 16 15 14 19 19 C 1.40087 * 119.99768 * 185.32737 * 18 16 15 20 20 C 1.39270 * 119.86492 * 323.31835 * 19 18 16 21 21 C 1.36600 * 120.58129 * 179.97438 * 20 19 18 22 22 C 1.39713 * 119.97985 * 0.02562 * 21 20 19 23 23 N 1.36019 * 133.37224 * 179.68141 * 22 21 20 24 24 C 1.30704 * 109.62787 * 179.88395 * 23 22 21 25 25 O 1.35312 * 125.03031 * 180.16567 * 24 23 22 26 26 N 1.36458 * 109.93666 * 0.41408 * 24 23 22 27 27 H 0.97003 * 126.36705 * 179.71732 * 26 24 23 28 28 C 1.38430 * 107.26775 * 359.75142 * 26 24 23 29 29 C 1.38545 * 119.85879 * 143.34891 * 19 18 16 30 30 C 1.46842 * 111.19651 * 61.74173 * 14 13 12 31 31 H 0.97005 * 119.99262 * 0.02562 * 1 2 3 32 32 H 1.09008 * 109.52263 * 302.30978 * 11 9 7 33 33 H 1.08996 * 109.52131 * 62.43615 * 11 9 7 34 34 H 1.09006 * 109.50383 * 177.59647 * 12 11 9 35 35 H 1.09004 * 109.50309 * 297.67185 * 12 11 9 36 36 H 1.09007 * 109.45956 * 180.80898 * 13 12 11 37 37 H 1.08996 * 109.46353 * 60.84155 * 13 12 11 38 38 H 1.09001 * 109.47134 * 49.46957 * 15 14 13 39 39 H 1.09001 * 109.47133 * 289.46809 * 15 14 13 40 40 H 0.96997 * 119.99737 * 5.32606 * 18 16 15 41 41 H 1.08001 * 119.70973 * 0.02562 * 20 19 18 42 42 H 1.07994 * 120.01066 * 180.02562 * 21 20 19 43 43 H 0.96695 * 113.99849 * 270.28676 * 25 24 23 44 44 H 1.08000 * 120.17551 * 0.02562 * 29 19 18 45 45 H 1.09004 * 109.46437 * 58.27533 * 30 14 13 46 46 H 1.08997 * 109.46379 * 178.24364 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8758 -0.6786 0.8886 11 6 4.0223 -0.4775 -1.2531 12 6 5.5522 -0.5346 -1.2763 13 6 6.0039 -1.9963 -1.2386 14 7 5.4907 -2.6373 -0.0212 15 6 6.0187 -4.0010 0.1183 16 6 5.6861 -4.5306 1.4894 17 8 5.1714 -3.8031 2.3122 18 7 5.9606 -5.8127 1.8014 19 6 5.5514 -6.3365 3.0346 20 6 5.5831 -5.5352 4.1733 21 6 5.1869 -6.0307 5.3830 22 6 4.7454 -7.3523 5.4854 23 7 4.3045 -8.1121 6.5239 24 6 4.0017 -9.3089 6.0948 25 8 3.5290 -10.3144 6.8671 26 7 4.2379 -9.3960 4.7537 27 1 4.0995 -10.1766 4.1947 28 6 4.7126 -8.1635 4.3392 29 6 5.1173 -7.6496 3.1164 30 6 4.0225 -2.6367 0.0006 31 1 -0.4849 0.8402 -0.0004 32 1 3.6260 -0.9697 -2.1413 33 1 3.6958 0.5623 -1.2366 34 1 5.9203 -0.0633 -2.1877 35 1 5.9493 -0.0079 -0.4084 36 1 7.0931 -2.0399 -1.2405 37 1 5.6182 -2.5183 -2.1142 38 1 7.1007 -3.9869 -0.0131 39 1 5.5691 -4.6439 -0.6384 40 1 6.4415 -6.3728 1.1721 41 1 5.9233 -4.5129 4.0991 42 1 5.2150 -5.4012 6.2600 43 1 4.2188 -10.8704 7.2545 44 1 5.0941 -8.2698 2.2325 45 1 3.6459 -3.1557 -0.8808 46 1 3.6724 -3.1455 0.8987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:46 Heat of formation + Delta-G solvation = -13.129797 kcal Electronic energy + Delta-G solvation = -29469.342157 eV Core-core repulsion = 25359.123073 eV Total energy + Delta-G solvation = -4110.219085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.18415 -41.40269 -39.78013 -38.90637 -37.58205 -35.54451 -35.24784 -34.10450 -33.82644 -31.95790 -31.03118 -29.86516 -27.99993 -26.87315 -24.59720 -24.17705 -23.34278 -22.82481 -22.62778 -21.50983 -20.48020 -20.02559 -19.11925 -18.82100 -18.43288 -18.14770 -17.34092 -17.16681 -16.51851 -16.30478 -15.86470 -15.76346 -15.39397 -15.29456 -15.16406 -15.07398 -14.90676 -14.80330 -14.29964 -14.12181 -13.85858 -13.56537 -13.23807 -13.06807 -12.90755 -12.82053 -12.65778 -12.59578 -12.17647 -11.94512 -11.92258 -11.72132 -11.39972 -11.14479 -11.09458 -10.89396 -10.80360 -10.75097 -10.49430 -9.43568 -9.13888 -8.79364 -8.31178 -6.34025 -0.22820 0.40757 1.27038 1.28952 1.35707 1.47148 1.47545 1.71123 2.04204 2.32629 2.77921 2.79138 3.04929 3.10231 3.52217 3.74796 4.04742 4.05562 4.15417 4.18237 4.21813 4.25550 4.33346 4.40935 4.46134 4.48035 4.53125 4.71781 4.78342 4.88261 4.96840 4.98901 5.07569 5.11858 5.15360 5.18674 5.28440 5.33050 5.47011 5.52345 5.64152 5.78023 5.86686 5.94795 6.12735 6.21590 6.34991 6.55785 6.67285 6.72324 6.73193 7.27159 7.31334 8.86184 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.002434 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.533727 B =11503.091175 C =12664.972464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.259 1.259 5 H -0.300 1.300 6 H -0.253 1.253 7 C -0.518 4.518 8 H 0.027 0.973 9 C 0.022 3.978 10 H 0.012 0.988 11 C -0.122 4.122 12 C -0.116 4.116 13 C 0.066 3.934 14 N -0.543 5.543 15 C 0.043 3.957 16 C 0.506 3.494 17 O -0.539 6.539 18 N -0.658 5.658 19 C 0.166 3.834 20 C -0.129 4.129 21 C -0.063 4.063 22 C 0.018 3.982 23 N -0.527 5.527 24 C 0.457 3.543 25 O -0.443 6.443 26 N -0.584 5.584 27 H 0.441 0.559 28 C 0.072 3.928 29 C -0.127 4.127 30 C 0.092 3.908 31 H 0.265 0.735 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.043 0.957 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.432 0.568 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.434 0.566 44 H 0.167 0.833 45 H 0.019 0.981 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.971 -22.864 1.758 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.228 1.228 6 H -0.177 1.177 7 C -0.556 4.556 8 H 0.045 0.955 9 C 0.002 3.998 10 H 0.031 0.969 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.061 4.061 14 N -0.268 5.268 15 C -0.088 4.088 16 C 0.295 3.705 17 O -0.413 6.413 18 N -0.307 5.307 19 C 0.069 3.931 20 C -0.151 4.151 21 C -0.084 4.084 22 C -0.100 4.100 23 N -0.260 5.260 24 C 0.152 3.848 25 O -0.248 6.248 26 N -0.211 5.211 27 H 0.284 0.716 28 C -0.039 4.039 29 C -0.151 4.151 30 C -0.036 4.036 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.061 0.939 38 H 0.166 0.834 39 H 0.105 0.895 40 H 0.272 0.728 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.297 0.703 44 H 0.184 0.816 45 H 0.037 0.963 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.997 -21.493 3.467 29.561 hybrid contribution -0.564 -0.712 -1.232 1.530 sum 19.433 -22.205 2.235 29.592 Atomic orbital electron populations 1.70062 1.08208 1.27968 1.53085 1.25882 0.95457 1.03100 0.94204 0.85750 0.78851 0.78400 0.78860 1.18473 1.22849 1.17721 1.21348 0.91727 0.92765 1.49792 0.95486 1.19014 0.92675 0.93882 0.94199 0.96949 1.21913 0.96436 0.98626 0.98975 1.21651 0.94125 0.97285 1.02344 1.22126 1.00890 0.93795 0.89284 1.61549 1.08134 1.17576 1.39556 1.22061 1.04404 0.90304 0.92017 1.21408 0.77133 0.81131 0.90868 1.90784 1.41720 1.57520 1.51273 1.43318 1.57759 1.12648 1.16975 1.17375 0.97885 0.92227 0.85563 1.20811 1.02427 1.00812 0.91008 1.19988 0.98042 0.92019 0.98312 1.18995 1.05936 0.95659 0.89395 1.70589 1.21818 1.02744 1.30824 1.20342 0.95545 0.88739 0.80173 1.84832 1.36082 1.40815 1.63080 1.43185 1.55829 1.12753 1.09309 0.71623 1.18295 1.03067 0.86503 0.96025 1.19687 1.04464 0.95236 0.95701 1.21751 0.86179 0.97177 0.98481 0.92597 0.92820 0.95022 0.89232 0.92416 0.87281 0.93906 0.83391 0.89501 0.72814 0.85150 0.84933 0.70299 0.81574 0.96263 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.63 13.96 21.45 0.30 -62.33 16 2 C 0.01 0.62 5.45 84.66 0.46 1.08 16 3 Si 0.95 48.07 24.36 68.60 1.67 49.74 16 4 H -0.26 -12.05 6.89 99.48 0.69 -11.37 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 6 H -0.25 -12.24 6.53 99.48 0.65 -11.59 16 7 C -0.52 -31.58 9.14 25.60 0.23 -31.35 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C 0.02 1.08 1.85 -11.49 -0.02 1.05 16 10 H 0.01 0.67 7.19 -2.39 -0.02 0.66 16 11 C -0.12 -5.15 4.74 30.67 0.15 -5.00 16 12 C -0.12 -3.59 6.09 30.65 0.19 -3.41 16 13 C 0.07 1.65 5.46 86.33 0.47 2.12 16 14 N -0.54 -16.96 4.35 -900.96 -3.92 -20.88 16 15 C 0.04 0.87 5.45 85.56 0.47 1.33 16 16 C 0.51 13.07 7.20 87.65 0.63 13.71 16 17 O -0.54 -20.48 12.20 -3.07 -0.04 -20.52 16 18 N -0.66 -11.52 5.33 -303.31 -1.62 -13.14 16 19 C 0.17 3.66 6.27 38.14 0.24 3.90 16 20 C -0.13 -3.54 8.61 22.13 0.19 -3.35 16 21 C -0.06 -1.76 10.04 22.24 0.22 -1.54 16 22 C 0.02 0.48 7.22 39.39 0.28 0.76 16 23 N -0.53 -14.27 11.31 -306.34 -3.46 -17.73 16 24 C 0.46 8.71 9.39 179.75 1.69 10.40 16 25 O -0.44 -5.40 13.63 -85.99 -1.17 -6.57 16 26 N -0.58 -8.61 6.27 -302.40 -1.89 -10.50 16 27 H 0.44 2.87 8.96 -92.71 -0.83 2.04 16 28 C 0.07 1.48 7.30 38.75 0.28 1.76 16 29 C -0.13 -2.22 9.99 22.45 0.22 -2.00 16 30 C 0.09 3.88 4.34 86.33 0.37 4.25 16 31 H 0.27 16.29 8.31 -92.70 -0.77 15.52 16 32 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.03 1.41 3.37 -2.39 -0.01 1.41 16 34 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.11 1.87 8.01 -2.38 -0.02 1.85 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.15 1.70 7.98 -2.39 -0.02 1.68 16 39 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 40 H 0.43 3.26 8.83 -92.71 -0.82 2.44 16 41 H 0.13 4.06 6.29 -2.91 -0.02 4.05 16 42 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 43 H 0.43 0.05 9.06 -74.06 -0.67 -0.62 16 44 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 2.38 6.05 -2.39 -0.01 2.37 16 Total: -1.00 -92.56 367.47 -5.38 -97.94 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -1.33 Total: 10.27 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 6.08 Total: -6.27 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -10.59 Total: -124.57 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -1.21 Total: -27.09 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.74 kcal Total: -92.56 -5.38 -97.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.806 kcal (2) G-P(sol) polarization free energy of solvation -92.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds