Wall clock time and date at job start Wed Apr 1 2020 02:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99591 * 2 1 4 4 O 1.20820 * 120.00583 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99695 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47169 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47578 * 180.02562 * 6 5 3 8 8 C 1.37097 * 119.99703 * 265.56664 * 7 6 5 9 9 H 1.08003 * 119.99776 * 145.66981 * 8 7 6 10 10 C 1.38954 * 119.99865 * 325.65726 * 8 7 6 11 11 N 1.31410 * 119.99885 * 338.41645 * 10 8 7 12 12 Si 1.86801 * 119.99667 * 158.41956 * 10 8 7 13 13 H 1.48499 * 109.46819 * 90.00502 * 12 10 8 14 14 H 1.48496 * 109.46881 * 210.00116 * 12 10 8 15 15 H 1.48499 * 109.47150 * 330.00258 * 12 10 8 16 16 C 1.34778 * 119.99945 * 85.55653 * 7 6 5 17 17 O 1.21286 * 120.00092 * 0.02562 * 16 7 6 18 18 C 1.50698 * 119.99844 * 180.28004 * 16 7 6 19 19 C 1.52999 * 109.47191 * 179.72296 * 18 16 7 20 20 C 1.50698 * 109.47191 * 179.97438 * 19 18 16 21 21 C 1.38835 * 119.73560 * 269.72779 * 20 19 18 22 22 C 1.37744 * 120.66710 * 179.76266 * 21 20 19 23 23 C 1.39126 * 119.77835 * 0.50871 * 22 21 20 24 24 N 1.37686 * 133.50997 * 179.76979 * 23 22 21 25 25 H 0.97005 * 125.06501 * 0.02562 * 24 23 22 26 26 C 1.36828 * 109.87350 * 179.97438 * 24 23 22 27 27 C 1.34231 * 109.93393 * 0.02562 * 26 24 23 28 28 C 1.40673 * 119.33349 * 359.74807 * 23 22 21 29 29 C 1.36621 * 119.73996 * 90.00176 * 20 19 18 30 30 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47716 * 300.00318 * 1 2 3 32 32 H 1.09001 * 109.47178 * 60.00270 * 1 2 3 33 33 H 1.09004 * 109.47272 * 60.00178 * 5 3 2 34 34 H 1.08994 * 109.47646 * 300.00124 * 5 3 2 35 35 H 1.09000 * 109.47129 * 60.00347 * 6 5 3 36 36 H 1.09006 * 109.47340 * 300.00687 * 6 5 3 37 37 H 0.96998 * 119.99644 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.47250 * 299.72587 * 18 16 7 39 39 H 1.09002 * 109.46863 * 59.72760 * 18 16 7 40 40 H 1.08995 * 109.47267 * 300.00518 * 19 18 16 41 41 H 1.09003 * 109.46525 * 60.00009 * 19 18 16 42 42 H 1.08004 * 119.66603 * 0.02562 * 21 20 19 43 43 H 1.07998 * 120.11282 * 180.27794 * 22 21 20 44 44 H 1.08008 * 125.03455 * 180.02562 * 26 24 23 45 45 H 1.07997 * 126.50728 * 180.02562 * 27 26 24 46 46 H 1.07999 * 120.11307 * 0.02562 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0000 2.7421 -0.0002 7 7 5.4631 2.8189 -0.0002 8 6 6.1427 2.9471 1.1835 9 1 7.1076 2.4775 1.3057 10 6 5.5903 3.6815 2.2258 11 7 4.6671 4.5830 1.9772 12 14 6.1602 3.3872 3.9802 13 1 7.3046 4.2828 4.2857 14 1 5.0443 3.6726 4.9175 15 1 6.5846 1.9722 4.1320 16 6 6.1407 2.7633 -1.1639 17 8 5.5394 2.6502 -2.2111 18 6 7.6460 2.8360 -1.1635 19 6 8.1614 2.7448 -2.6011 20 6 9.6666 2.8181 -2.6007 21 6 10.2960 4.0513 -2.7033 22 6 11.6706 4.1410 -2.6999 23 6 12.4382 2.9847 -2.6034 24 7 13.7940 2.7463 -2.5785 25 1 14.4810 3.4293 -2.6304 26 6 14.0281 1.4027 -2.4686 27 6 12.8632 0.7377 -2.4200 28 6 11.7957 1.7371 -2.5051 29 6 10.4010 1.6700 -2.5050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.9564 0.7806 -0.8892 34 1 3.9557 0.7810 0.8907 35 1 3.6100 3.2368 0.8893 36 1 3.6106 3.2357 -0.8906 37 1 4.2813 5.0954 2.7049 38 1 7.9640 3.7808 -0.7227 39 1 8.0494 2.0086 -0.5797 40 1 7.8434 1.8001 -3.0419 41 1 7.7578 3.5722 -3.1849 42 1 9.7019 4.9498 -2.7823 43 1 12.1508 5.1053 -2.7757 44 1 15.0056 0.9450 -2.4270 45 1 12.7368 -0.3314 -2.3336 46 1 9.9045 0.7138 -2.4304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:09 Heat of formation + Delta-G solvation = -68.243699 kcal Electronic energy + Delta-G solvation = -29015.996161 eV Core-core repulsion = 24871.094407 eV Total energy + Delta-G solvation = -4144.901754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12997 -40.02033 -38.68422 -37.28785 -36.14756 -34.95254 -32.75188 -31.93231 -31.71518 -30.69661 -28.68121 -28.42661 -27.40424 -25.01996 -24.52815 -22.80459 -22.23852 -20.95598 -20.32216 -19.91405 -19.01596 -17.98572 -17.36320 -16.62019 -16.21651 -16.10830 -16.09948 -15.73865 -15.00476 -14.48122 -14.46140 -14.32521 -14.13383 -13.94520 -13.63644 -13.44659 -13.20845 -13.04068 -12.57844 -12.52077 -12.42263 -12.17478 -11.96285 -11.84203 -11.49843 -11.27544 -11.09582 -10.96668 -10.89443 -10.74950 -10.56788 -10.51363 -10.40663 -10.20851 -10.04078 -9.95496 -9.66332 -9.14144 -8.46633 -7.97893 -7.61473 -7.59064 -6.39036 -4.08054 1.24845 1.76603 2.70282 2.73969 3.07773 3.11532 3.12001 3.21702 3.24697 3.90531 4.03230 4.11842 4.71891 4.80307 4.86265 4.96935 5.17572 5.24131 5.27213 5.32917 5.38881 5.40227 5.55330 5.65770 5.66362 5.82968 5.87060 5.90202 5.94416 6.00535 6.05061 6.23308 6.28835 6.33313 6.49715 6.58050 6.61823 6.75692 6.76725 6.81062 6.87060 6.94983 7.05773 7.29071 7.34281 7.49288 7.50349 7.87470 8.21393 8.34810 9.05824 9.48912 9.91939 10.62210 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.002549 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.388136 B =10982.686304 C =12206.508025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.126 3.874 7 N -0.440 5.440 8 C -0.345 4.345 9 H 0.093 0.907 10 C 0.044 3.956 11 N -0.853 5.853 12 Si 0.910 3.090 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.470 3.530 17 O -0.605 6.605 18 C -0.111 4.111 19 C -0.061 4.061 20 C -0.094 4.094 21 C -0.088 4.088 22 C -0.133 4.133 23 C 0.086 3.914 24 N -0.600 5.600 25 H 0.412 0.588 26 C 0.041 3.959 27 C -0.204 4.204 28 C -0.108 4.108 29 C -0.070 4.070 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.271 0.729 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.166 0.834 45 H 0.144 0.856 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.175 -6.310 -4.786 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.001 3.999 7 N -0.158 5.158 8 C -0.472 4.472 9 H 0.111 0.889 10 C -0.163 4.163 11 N -0.488 5.488 12 Si 0.736 3.264 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.259 3.741 17 O -0.492 6.492 18 C -0.151 4.151 19 C -0.098 4.098 20 C -0.095 4.095 21 C -0.107 4.107 22 C -0.154 4.154 23 C -0.020 4.020 24 N -0.204 5.204 25 H 0.248 0.752 26 C -0.085 4.085 27 C -0.230 4.230 28 C -0.113 4.113 29 C -0.089 4.089 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.183 0.817 45 H 0.161 0.839 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.617 -5.846 -5.171 13.178 hybrid contribution 0.449 0.277 1.129 1.246 sum 11.066 -5.569 -4.042 13.031 Atomic orbital electron populations 1.23161 0.77438 1.02991 1.02317 1.86542 1.22699 1.34474 1.84686 1.24102 0.92425 0.80862 0.71708 1.90648 1.67272 1.36221 1.45049 1.21913 0.85758 1.03527 1.05133 1.21193 0.82425 0.90785 1.05447 1.43446 1.04393 1.62701 1.05224 1.19439 1.05412 1.32450 0.89916 0.88896 1.25356 0.96884 0.93614 1.00431 1.69926 1.27299 1.18551 1.33064 0.86210 0.78492 0.79216 0.82477 1.20182 1.20730 1.19216 1.20550 0.89749 0.80251 0.83500 1.90528 1.70855 1.56031 1.31766 1.21330 0.93648 1.03886 0.96217 1.20322 0.88815 1.03544 0.97151 1.19561 0.96251 0.92624 1.01070 1.20814 0.93041 0.97698 0.99149 1.19968 0.93333 0.95152 1.06920 1.18262 0.83169 0.95728 1.04884 1.41743 1.05568 1.07411 1.65655 0.75207 1.21731 0.99546 0.82502 1.04672 1.21701 0.90631 0.98550 1.12070 1.19200 0.93359 0.92356 1.06356 1.20180 0.91075 0.98365 0.99290 0.88650 0.92188 0.92199 0.88399 0.87877 0.86446 0.91891 0.91865 0.89495 0.90298 0.90949 0.90808 0.85558 0.86566 0.81669 0.83858 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.10 10.57 -39.24 -0.41 -6.52 16 3 C 0.47 9.13 7.96 36.01 0.29 9.42 16 4 O -0.51 -11.19 15.73 -18.75 -0.29 -11.49 16 5 C -0.12 -2.51 6.11 -27.88 -0.17 -2.68 16 6 C 0.13 3.03 4.21 -4.04 -0.02 3.02 16 7 N -0.44 -10.74 2.55 -114.81 -0.29 -11.04 16 8 C -0.34 -8.41 8.70 -14.93 -0.13 -8.54 16 9 H 0.09 2.15 6.97 -52.48 -0.37 1.79 16 10 C 0.04 1.08 4.94 -17.47 -0.09 0.99 16 11 N -0.85 -22.47 11.31 55.50 0.63 -21.84 16 12 Si 0.91 19.06 29.60 -169.99 -5.03 14.03 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 C 0.47 11.02 7.61 -10.99 -0.08 10.93 16 17 O -0.61 -15.39 15.63 5.55 0.09 -15.31 16 18 C -0.11 -2.14 4.34 -27.88 -0.12 -2.26 16 19 C -0.06 -1.03 4.62 -27.88 -0.13 -1.16 16 20 C -0.09 -1.43 5.10 -104.99 -0.54 -1.97 16 21 C -0.09 -1.23 9.66 -39.54 -0.38 -1.61 16 22 C -0.13 -1.69 10.08 -39.43 -0.40 -2.09 16 23 C 0.09 1.11 7.28 -83.99 -0.61 0.50 16 24 N -0.60 -5.82 6.07 -10.65 -0.06 -5.89 16 25 H 0.41 2.66 8.96 -40.82 -0.37 2.29 16 26 C 0.04 0.38 11.81 -16.73 -0.20 0.18 16 27 C -0.20 -2.32 11.08 -37.67 -0.42 -2.74 16 28 C -0.11 -1.52 6.37 -105.14 -0.67 -2.19 16 29 C -0.07 -1.03 9.67 -39.65 -0.38 -1.42 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 34 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 35 H 0.12 3.08 5.30 -51.93 -0.28 2.81 16 36 H 0.06 1.64 7.52 -51.93 -0.39 1.25 16 37 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 39 H 0.08 1.45 7.64 -51.93 -0.40 1.05 16 40 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 41 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 42 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.17 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -32.04 392.72 -8.86 -40.90 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.41 Total: 11.33 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.98 Total: -0.10 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.27 Total: -38.76 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.62 Total: -33.31 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.04 -8.86 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.344 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds