Wall clock time and date at job start Wed Apr 1 2020 03:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46993 * 299.99591 * 3 2 1 6 6 H 1.48501 * 109.47275 * 59.99767 * 3 2 1 7 7 C 1.37885 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99449 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99875 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47019 * 179.97438 * 9 7 2 11 11 C 1.46952 * 110.99650 * 169.99877 * 10 9 7 12 12 C 1.53052 * 109.35979 * 183.19304 * 11 10 9 13 13 N 1.46962 * 109.36417 * 301.59488 * 12 11 10 14 14 C 1.46891 * 111.00091 * 183.19115 * 13 12 11 15 15 N 1.46502 * 109.47170 * 155.00024 * 14 13 12 16 16 N 1.40273 * 126.57873 * 285.17269 * 15 14 13 17 17 C 1.30152 * 107.74871 * 180.27001 * 16 15 14 18 18 C 1.47904 * 125.46164 * 179.78305 * 17 16 15 19 19 C 1.39539 * 120.14268 * 359.70671 * 18 17 16 20 20 C 1.37966 * 119.85404 * 179.67619 * 19 18 17 21 21 C 1.38344 * 120.14594 * 0.62198 * 20 19 18 22 22 C 1.38349 * 120.28233 * 359.67433 * 21 20 19 23 23 C 1.37976 * 120.14373 * 0.02562 * 22 21 20 24 24 O 1.35089 * 109.07394 * 359.74240 * 17 16 15 25 25 C 1.34314 * 108.86294 * 0.02562 * 24 17 16 26 26 O 1.21693 * 126.26770 * 179.97438 * 25 24 17 27 27 C 1.46956 * 110.87530 * 59.32387 * 13 12 11 28 28 C 1.46954 * 110.99930 * 293.80204 * 10 9 7 29 29 H 0.97006 * 120.00207 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47073 * 59.99741 * 9 7 2 31 31 H 1.09004 * 109.47052 * 299.99807 * 9 7 2 32 32 H 1.08998 * 109.49205 * 63.22528 * 11 10 9 33 33 H 1.08998 * 109.48939 * 303.15208 * 11 10 9 34 34 H 1.09007 * 109.48970 * 181.63648 * 12 11 10 35 35 H 1.08990 * 109.49471 * 61.56565 * 12 11 10 36 36 H 1.09001 * 109.47571 * 35.00158 * 14 13 12 37 37 H 1.08998 * 109.47402 * 274.99746 * 14 13 12 38 38 H 1.07999 * 120.06629 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.92441 * 180.31567 * 20 19 18 40 40 H 1.08000 * 119.86122 * 179.69655 * 21 20 19 41 41 H 1.08005 * 119.92990 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.07247 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.49387 * 60.65098 * 27 13 12 44 44 H 1.09008 * 109.48454 * 180.71670 * 27 13 12 45 45 H 1.08999 * 109.48455 * 296.77659 * 28 10 9 46 46 H 1.08991 * 109.49429 * 56.82028 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5208 -4.8940 0.2388 12 6 2.5563 -6.0187 0.3106 13 7 3.3194 -6.0593 -0.9448 14 6 4.2739 -7.1758 -0.9447 15 7 4.5693 -7.5659 -2.3256 16 7 3.7294 -8.2848 -3.1890 17 6 4.3561 -8.4327 -4.3201 18 6 3.8281 -9.1386 -5.5077 19 6 2.5602 -9.7202 -5.4710 20 6 2.0708 -10.3715 -6.5845 21 6 2.8393 -10.4598 -7.7314 22 6 4.0997 -9.8906 -7.7723 23 6 4.5982 -9.2312 -6.6676 24 8 5.5658 -7.8373 -4.2357 25 6 5.7008 -7.2999 -3.0122 26 8 6.6681 -6.6894 -2.5968 27 6 4.0041 -4.7810 -1.1830 28 6 2.9686 -3.6562 -1.2547 29 1 -0.4851 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 0.8252 -5.0915 -0.5768 33 1 0.9733 -4.8433 1.1799 34 1 2.0484 -6.9718 0.4583 35 1 3.2354 -5.8353 1.1431 36 1 3.8420 -8.0232 -0.4123 37 1 5.1945 -6.8668 -0.4497 38 1 1.9615 -9.6565 -4.5744 39 1 1.0876 -10.8176 -6.5590 40 1 2.4537 -10.9749 -8.5988 41 1 4.6946 -9.9626 -8.6708 42 1 5.5820 -8.7870 -6.7009 43 1 4.6997 -4.5835 -0.3675 44 1 4.5516 -4.8317 -2.1242 45 1 2.2895 -3.8397 -2.0873 46 1 3.4762 -2.7032 -1.4027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:26 Heat of formation + Delta-G solvation = 50.558314 kcal Electronic energy + Delta-G solvation = -29411.159067 eV Core-core repulsion = 25303.701706 eV Total energy + Delta-G solvation = -4107.457361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.53620 -39.60534 -38.98797 -38.01652 -36.48538 -34.82210 -33.11079 -32.42169 -31.50361 -30.62129 -30.41063 -28.33693 -26.33511 -24.82704 -23.99967 -23.35898 -23.08287 -22.17221 -21.73782 -21.40761 -19.29762 -18.47809 -17.92104 -17.27418 -16.66607 -16.41714 -16.33181 -15.94072 -15.67116 -15.19232 -14.85243 -14.58189 -14.37327 -14.26545 -13.96489 -13.92972 -13.90681 -13.48821 -13.19442 -12.99153 -12.62115 -12.34707 -12.16714 -12.04140 -11.92913 -11.82474 -11.56437 -11.23405 -11.05207 -10.91849 -10.80602 -10.67874 -10.47379 -10.39538 -9.99787 -9.76696 -9.47666 -9.19451 -8.80732 -8.47859 -8.41155 -7.28178 -6.03803 -4.05172 0.19579 0.88998 1.41678 1.74554 2.04107 2.25103 3.30790 3.31121 3.38211 3.43417 3.63496 3.99832 4.35300 4.41776 4.44967 4.45840 4.65939 4.86465 4.87579 4.92059 4.94573 5.01615 5.12122 5.24448 5.31869 5.35616 5.43553 5.52657 5.56328 5.65359 5.75633 5.83530 5.87641 5.92463 5.96931 5.98461 6.08567 6.35089 6.36451 6.49909 6.64005 6.89077 6.98198 7.21171 7.28009 7.33305 7.38092 7.78437 8.05527 8.16555 8.52304 9.02529 9.59261 11.07092 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.002263 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.537989 B =12367.792617 C =12740.417592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.069 3.931 13 N -0.552 5.552 14 C 0.318 3.682 15 N -0.439 5.439 16 N -0.235 5.235 17 C 0.274 3.726 18 C -0.030 4.030 19 C -0.065 4.065 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.078 4.078 24 O -0.270 6.270 25 C 0.607 3.393 26 O -0.483 6.483 27 C 0.059 3.941 28 C 0.070 3.930 29 H 0.261 0.739 30 H -0.008 1.008 31 H 0.031 0.969 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -25.463 -12.431 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.059 4.059 13 N -0.279 5.279 14 C 0.109 3.891 15 N -0.272 5.272 16 N -0.064 5.064 17 C 0.051 3.949 18 C -0.032 4.032 19 C -0.085 4.085 20 C -0.139 4.139 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.098 4.098 24 O -0.167 6.167 25 C 0.358 3.642 26 O -0.364 6.364 27 C -0.069 4.069 28 C -0.059 4.059 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.874 -25.048 -11.673 28.252 hybrid contribution 0.943 1.280 -0.377 1.634 sum 6.817 -23.769 -12.050 27.507 Atomic orbital electron populations 1.69964 1.06061 1.26685 1.51060 1.24991 0.94869 0.99342 0.95425 0.86450 0.80103 0.83420 0.77512 1.19658 1.21095 1.20991 1.21189 0.93496 0.89932 1.49988 0.91869 1.19706 0.89991 0.87229 0.96167 1.62305 1.28185 1.02796 1.33060 1.22064 0.94572 0.89792 1.00815 1.22151 0.95934 0.99374 0.88428 1.61751 1.26178 1.03495 1.36502 1.21936 0.97148 0.95129 0.74917 1.50302 1.12688 1.50008 1.14184 1.77490 1.16631 1.13119 0.99132 1.23855 0.80771 0.95350 0.94963 1.17296 0.95720 1.01320 0.88848 1.21232 0.93179 0.94553 0.99554 1.21146 1.00495 0.99611 0.92661 1.21447 0.94120 0.97537 0.98176 1.21125 0.96286 0.98250 0.98354 1.21296 0.99744 0.97151 0.91579 1.85142 1.34977 1.61860 1.34710 1.19352 0.85361 0.80727 0.78730 1.91226 1.32918 1.42976 1.69240 1.22322 0.96191 0.88037 1.00316 1.21958 0.95278 0.97283 0.91354 0.92965 0.99054 0.95095 0.94965 0.90544 0.90525 0.93461 0.87525 0.89353 0.84153 0.84760 0.85249 0.84941 0.84684 0.93412 0.91779 0.95369 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.34 8.47 -34.44 -0.29 -14.64 16 8 H 0.06 1.78 7.13 -52.48 -0.37 1.40 16 9 C 0.19 5.09 4.72 -4.97 -0.02 5.06 16 10 N -0.54 -11.67 4.70 -235.92 -1.11 -12.78 16 11 C 0.06 1.01 5.61 -3.77 -0.02 0.98 16 12 C 0.07 0.96 5.53 -3.76 -0.02 0.94 16 13 N -0.55 -8.19 4.81 -238.37 -1.15 -9.33 16 14 C 0.32 3.90 6.31 -63.32 -0.40 3.50 16 15 N -0.44 -5.98 3.83 -68.30 -0.26 -6.24 16 16 N -0.24 -3.00 12.16 31.97 0.39 -2.61 16 17 C 0.27 3.20 7.94 -14.31 -0.11 3.08 16 18 C -0.03 -0.27 5.87 -104.97 -0.62 -0.88 16 19 C -0.07 -0.50 9.68 -39.20 -0.38 -0.88 16 20 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 21 C -0.09 -0.47 10.04 -39.50 -0.40 -0.87 16 22 C -0.12 -0.67 10.03 -39.64 -0.40 -1.07 16 23 C -0.08 -0.57 9.71 -39.19 -0.38 -0.95 16 24 O -0.27 -3.60 10.43 -20.73 -0.22 -3.81 16 25 C 0.61 9.11 9.08 54.16 0.49 9.60 16 26 O -0.48 -8.41 17.75 -19.00 -0.34 -8.74 16 27 C 0.06 1.00 5.47 -3.77 -0.02 0.98 16 28 C 0.07 1.43 5.43 -3.77 -0.02 1.41 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.08 0.87 7.98 -51.92 -0.41 0.45 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.03 7.75 -51.93 -0.40 0.63 16 37 H 0.09 1.05 7.65 -51.93 -0.40 0.65 16 38 H 0.14 1.03 7.82 -52.49 -0.41 0.62 16 39 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 41 H 0.13 0.44 8.06 -52.48 -0.42 0.01 16 42 H 0.14 0.91 7.89 -52.49 -0.41 0.49 16 43 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 44 H 0.06 1.11 7.96 -51.92 -0.41 0.70 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.94 6.79 -51.93 -0.35 1.59 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -33.41 387.44 -10.74 -44.16 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.53 Total: -3.87 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -3.09 Total: 6.66 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -1.39 Total: -57.07 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.55 Total: -12.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.41 -10.74 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.716 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds