Wall clock time and date at job start Wed Apr 1 2020 02:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 117.00227 * 2 1 4 4 O 1.20830 * 120.00066 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00390 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47010 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46661 * 180.02562 * 6 5 3 8 8 C 1.36938 * 120.00102 * 270.00067 * 7 6 5 9 9 H 1.08001 * 119.99628 * 316.46979 * 8 7 6 10 10 C 1.38806 * 119.99857 * 136.47060 * 8 7 6 11 11 N 1.31621 * 119.99825 * 170.37142 * 10 8 7 12 12 Si 1.86801 * 120.00248 * 350.36881 * 10 8 7 13 13 H 1.48508 * 109.46922 * 93.85293 * 12 10 8 14 14 H 1.48491 * 109.47296 * 213.85227 * 12 10 8 15 15 H 1.48499 * 109.47030 * 333.85816 * 12 10 8 16 16 C 1.46498 * 119.99703 * 90.00705 * 7 6 5 17 17 C 1.50702 * 109.47236 * 81.94712 * 16 7 6 18 18 C 1.35454 * 128.00412 * 275.01703 * 17 16 7 19 19 O 1.34037 * 106.44493 * 180.23816 * 18 17 16 20 20 N 1.20923 * 111.56851 * 359.74582 * 19 18 17 21 21 C 1.30182 * 111.60462 * 0.02562 * 20 19 18 22 22 C 1.50698 * 126.80209 * 179.97438 * 21 20 19 23 23 C 1.50698 * 109.46992 * 66.40343 * 22 21 20 24 24 C 1.38238 * 119.99792 * 107.37129 * 23 22 21 25 25 C 1.38232 * 119.99649 * 180.27523 * 24 23 22 26 26 C 1.38238 * 120.00287 * 359.48822 * 25 24 23 27 27 C 1.38234 * 119.99518 * 0.51331 * 26 25 24 28 28 C 1.38230 * 120.00029 * 287.39218 * 23 22 21 29 29 H 1.09000 * 109.47187 * 59.99844 * 1 2 3 30 30 H 1.09004 * 109.46898 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46989 * 299.99847 * 1 2 3 32 32 H 1.09007 * 109.46731 * 60.00493 * 5 3 2 33 33 H 1.08993 * 109.47435 * 300.00525 * 5 3 2 34 34 H 1.08997 * 109.46875 * 60.00689 * 6 5 3 35 35 H 1.08999 * 109.47519 * 300.00222 * 6 5 3 36 36 H 0.96996 * 119.99966 * 180.02562 * 11 10 8 37 37 H 1.08991 * 109.47424 * 321.94195 * 16 7 6 38 38 H 1.09006 * 109.46819 * 201.94423 * 16 7 6 39 39 H 1.07998 * 126.77508 * 359.95922 * 18 17 16 40 40 H 1.09001 * 109.47282 * 306.40409 * 22 21 20 41 41 H 1.08996 * 109.46912 * 186.40200 * 22 21 20 42 42 H 1.07997 * 120.00159 * 0.02562 * 24 23 22 43 43 H 1.08003 * 119.99901 * 179.72558 * 25 24 23 44 44 H 1.08001 * 120.00335 * 180.23384 * 26 25 24 45 45 H 1.08008 * 119.99622 * 179.72116 * 27 26 25 46 46 H 1.08007 * 120.00158 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1469 2.8552 1.1856 9 1 5.7963 3.4823 1.9920 10 6 7.2905 2.0861 1.3513 11 7 8.0524 2.2594 2.4104 12 14 7.7481 0.8050 0.0710 13 1 8.6901 1.4006 -0.9105 14 1 8.3954 -0.3527 0.7386 15 1 6.5227 0.3490 -0.6329 16 6 6.1945 2.8565 -1.2690 17 6 6.1996 4.2653 -1.8042 18 6 5.2504 4.8766 -2.5525 19 8 5.6963 6.1180 -2.7910 20 7 6.7741 6.3095 -2.2771 21 6 7.1949 5.2557 -1.6391 22 6 8.4893 5.1171 -0.8798 23 6 8.4666 6.0264 0.3217 24 6 8.3264 5.4933 1.5894 25 6 8.2999 6.3278 2.6911 26 6 8.4241 7.6947 2.5260 27 6 8.5643 8.2277 1.2583 28 6 8.5855 7.3936 0.1562 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7806 -0.8893 33 1 3.9557 0.7809 0.8907 34 1 3.6100 3.2367 0.8894 35 1 3.6107 3.2357 -0.8906 36 1 8.8518 1.7223 2.5260 37 1 5.7093 2.1965 -1.9879 38 1 7.2204 2.5257 -1.1069 39 1 4.3202 4.4470 -2.8939 40 1 9.3217 5.3917 -1.5276 41 1 8.6093 4.0846 -0.5518 42 1 8.2336 4.4251 1.7188 43 1 8.1859 5.9117 3.6812 44 1 8.4072 8.3464 3.3870 45 1 8.6568 9.2960 1.1289 46 1 8.6951 7.8102 -0.8343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:43 Heat of formation + Delta-G solvation = 22.462786 kcal Electronic energy + Delta-G solvation = -30778.371610 eV Core-core repulsion = 26637.403184 eV Total energy + Delta-G solvation = -4140.968426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.36128 -40.21275 -38.62869 -36.96820 -36.18247 -34.46231 -32.35618 -32.15230 -30.85114 -30.31827 -30.11360 -27.74182 -26.85904 -26.37334 -24.70228 -22.12604 -21.68758 -21.62268 -20.94065 -20.11001 -19.77992 -17.52483 -17.29555 -17.07667 -16.67124 -16.38762 -16.24308 -16.05879 -15.44014 -14.66989 -14.45899 -14.33729 -14.14925 -13.90316 -13.38722 -13.26553 -12.99069 -12.92463 -12.70272 -12.61248 -12.31025 -12.18798 -12.13526 -11.84399 -11.64839 -11.59612 -11.29526 -11.00822 -10.73434 -10.71824 -10.46225 -10.35848 -10.29840 -10.21609 -10.04729 -9.81778 -9.28568 -8.93345 -8.70578 -8.23780 -8.11605 -7.07592 -6.17500 -3.74159 1.88727 2.04307 2.09822 2.46025 2.77229 2.94969 3.12632 3.28183 3.32162 3.77824 4.28561 4.39072 4.79302 4.84644 5.03714 5.08296 5.09790 5.15988 5.23141 5.38843 5.43264 5.45449 5.49718 5.55752 5.60520 5.65378 5.73128 5.87086 5.94205 6.00054 6.05341 6.15232 6.23358 6.31717 6.35391 6.38211 6.40895 6.54741 6.55053 6.71684 6.74171 6.84561 7.02863 7.33308 7.38671 7.74321 7.90752 7.97488 8.22755 8.73148 8.79976 9.45057 9.85925 10.94746 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.004006 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.190312 B = 6987.636480 C = 7760.506942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.464 3.536 4 O -0.514 6.514 5 C -0.136 4.136 6 C 0.167 3.833 7 N -0.592 5.592 8 C -0.264 4.264 9 H 0.083 0.917 10 C 0.040 3.960 11 N -0.897 5.897 12 Si 0.875 3.125 13 H -0.283 1.283 14 H -0.299 1.299 15 H -0.264 1.264 16 C 0.198 3.802 17 C -0.186 4.186 18 C -0.079 4.079 19 O 0.087 5.913 20 N -0.372 5.372 21 C 0.043 3.957 22 C 0.001 3.999 23 C -0.086 4.086 24 C -0.087 4.087 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.111 4.111 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.267 0.733 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.206 0.794 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.175 0.825 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -0.009 -6.202 7.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.177 4.177 6 C 0.040 3.960 7 N -0.312 5.312 8 C -0.393 4.393 9 H 0.100 0.900 10 C -0.160 4.160 11 N -0.538 5.538 12 Si 0.705 3.295 13 H -0.211 1.211 14 H -0.227 1.227 15 H -0.189 1.189 16 C 0.072 3.928 17 C -0.192 4.192 18 C -0.161 4.161 19 O 0.022 5.978 20 N -0.078 5.078 21 C -0.116 4.116 22 C -0.037 4.037 23 C -0.087 4.087 24 C -0.105 4.105 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.159 4.159 28 C -0.129 4.129 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.223 0.777 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.192 0.808 43 H 0.137 0.863 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.597 1.449 -6.284 7.920 hybrid contribution -0.189 -1.488 -0.360 1.542 sum -4.785 -0.039 -6.644 8.188 Atomic orbital electron populations 1.23177 0.77351 1.03142 1.02268 1.86572 1.22781 1.34522 1.84380 1.24405 0.92674 0.80846 0.71385 1.90631 1.67496 1.36317 1.45752 1.22373 0.84906 1.04624 1.05759 1.20717 0.84033 0.90217 1.01038 1.44122 1.00756 1.84691 1.01658 1.18843 1.07916 1.21460 0.91039 0.89984 1.25565 0.97863 0.96675 0.95942 1.69650 1.15017 1.41063 1.28049 0.86981 0.78635 0.82398 0.81444 1.21116 1.22662 1.18888 1.19709 0.97763 0.87366 0.87953 1.22429 0.94170 1.01742 1.00871 1.25586 1.01722 0.85402 1.03401 1.84734 1.26368 1.30049 1.56652 1.73715 0.97407 1.23444 1.13244 1.23216 0.99306 0.89669 0.99404 1.18908 0.90771 1.01078 0.92963 1.19614 1.01375 0.93275 0.94415 1.22185 0.93449 1.04079 0.90784 1.21187 1.00300 0.93027 0.99382 1.21101 1.01335 0.95566 0.96691 1.20907 1.03234 0.98827 0.92902 1.20946 1.00447 0.93252 0.98260 0.92235 0.88604 0.92121 0.88717 0.87117 0.91682 0.93374 0.92244 0.92755 0.91134 0.77719 0.90253 0.88389 0.80805 0.86298 0.87128 0.87147 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -5.12 10.56 -39.25 -0.41 -5.53 16 3 C 0.46 7.26 7.96 36.01 0.29 7.55 16 4 O -0.51 -9.10 15.73 -18.75 -0.30 -9.39 16 5 C -0.14 -2.18 6.14 -27.88 -0.17 -2.35 16 6 C 0.17 2.99 4.96 -4.04 -0.02 2.97 16 7 N -0.59 -12.00 2.04 -174.61 -0.36 -12.35 16 8 C -0.26 -6.24 9.31 -15.06 -0.14 -6.38 16 9 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 10 C 0.04 0.97 4.74 -17.43 -0.08 0.89 16 11 N -0.90 -22.99 12.44 55.49 0.69 -22.30 16 12 Si 0.88 19.05 24.65 -169.99 -4.19 14.86 16 13 H -0.28 -6.04 6.81 56.52 0.39 -5.66 16 14 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.26 -5.42 6.88 56.52 0.39 -5.03 16 16 C 0.20 3.72 4.34 -5.19 -0.02 3.70 16 17 C -0.19 -3.37 5.87 -104.42 -0.61 -3.98 16 18 C -0.08 -1.23 12.06 29.74 0.36 -0.87 16 19 O 0.09 1.48 11.20 17.18 0.19 1.68 16 20 N -0.37 -6.99 11.98 33.43 0.40 -6.59 16 21 C 0.04 0.82 6.48 -82.10 -0.53 0.29 16 22 C 0.00 0.01 5.97 -29.04 -0.17 -0.16 16 23 C -0.09 -1.69 5.18 -104.63 -0.54 -2.23 16 24 C -0.09 -1.84 9.67 -39.58 -0.38 -2.22 16 25 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 26 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 27 C -0.14 -2.34 10.05 -39.58 -0.40 -2.74 16 28 C -0.11 -2.00 9.54 -39.59 -0.38 -2.38 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 34 H 0.06 1.27 8.00 -51.93 -0.42 0.86 16 35 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 38 H 0.07 1.44 2.74 -51.93 -0.14 1.30 16 39 H 0.21 2.39 8.06 -52.49 -0.42 1.97 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.10 1.97 6.95 -51.93 -0.36 1.61 16 42 H 0.17 4.07 4.72 -52.49 -0.25 3.82 16 43 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 46 H 0.11 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -27.78 386.17 -6.92 -34.70 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.23 Total: 10.87 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.54 Total: -11.76 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.73 Total: -41.25 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.52 Total: -13.25 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.19 Total: 14.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.78 -6.92 -34.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.165 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds