Wall clock time and date at job start Wed Apr 1 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 117.00227 * 2 1 4 4 O 1.20830 * 120.00066 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00390 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47010 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46661 * 180.02562 * 6 5 3 8 8 C 1.36938 * 120.00102 * 270.00067 * 7 6 5 9 9 H 1.08001 * 119.99628 * 316.46979 * 8 7 6 10 10 C 1.38806 * 119.99857 * 136.47060 * 8 7 6 11 11 N 1.31621 * 119.99825 * 170.37142 * 10 8 7 12 12 Si 1.86801 * 120.00248 * 350.36881 * 10 8 7 13 13 H 1.48508 * 109.46922 * 93.85293 * 12 10 8 14 14 H 1.48491 * 109.47296 * 213.85227 * 12 10 8 15 15 H 1.48499 * 109.47030 * 333.85816 * 12 10 8 16 16 C 1.46498 * 119.99703 * 90.00705 * 7 6 5 17 17 C 1.50702 * 109.47236 * 81.94712 * 16 7 6 18 18 C 1.35454 * 128.00412 * 275.01703 * 17 16 7 19 19 O 1.34037 * 106.44493 * 180.23816 * 18 17 16 20 20 N 1.20923 * 111.56851 * 359.74582 * 19 18 17 21 21 C 1.30182 * 111.60462 * 0.02562 * 20 19 18 22 22 C 1.50698 * 126.80209 * 179.97438 * 21 20 19 23 23 C 1.50698 * 109.46992 * 66.40343 * 22 21 20 24 24 C 1.38238 * 119.99792 * 107.37129 * 23 22 21 25 25 C 1.38232 * 119.99649 * 180.27523 * 24 23 22 26 26 C 1.38238 * 120.00287 * 359.48822 * 25 24 23 27 27 C 1.38234 * 119.99518 * 0.51331 * 26 25 24 28 28 C 1.38230 * 120.00029 * 287.39218 * 23 22 21 29 29 H 1.09000 * 109.47187 * 59.99844 * 1 2 3 30 30 H 1.09004 * 109.46898 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46989 * 299.99847 * 1 2 3 32 32 H 1.09007 * 109.46731 * 60.00493 * 5 3 2 33 33 H 1.08993 * 109.47435 * 300.00525 * 5 3 2 34 34 H 1.08997 * 109.46875 * 60.00689 * 6 5 3 35 35 H 1.08999 * 109.47519 * 300.00222 * 6 5 3 36 36 H 0.96996 * 119.99966 * 180.02562 * 11 10 8 37 37 H 1.08991 * 109.47424 * 321.94195 * 16 7 6 38 38 H 1.09006 * 109.46819 * 201.94423 * 16 7 6 39 39 H 1.07998 * 126.77508 * 359.95922 * 18 17 16 40 40 H 1.09001 * 109.47282 * 306.40409 * 22 21 20 41 41 H 1.08996 * 109.46912 * 186.40200 * 22 21 20 42 42 H 1.07997 * 120.00159 * 0.02562 * 24 23 22 43 43 H 1.08003 * 119.99901 * 179.72558 * 25 24 23 44 44 H 1.08001 * 120.00335 * 180.23384 * 26 25 24 45 45 H 1.08008 * 119.99622 * 179.72116 * 27 26 25 46 46 H 1.08007 * 120.00158 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8187 -0.0002 8 6 6.1469 2.8552 1.1856 9 1 5.7963 3.4823 1.9920 10 6 7.2905 2.0861 1.3513 11 7 8.0524 2.2594 2.4104 12 14 7.7481 0.8050 0.0710 13 1 8.6901 1.4006 -0.9105 14 1 8.3954 -0.3527 0.7386 15 1 6.5227 0.3490 -0.6329 16 6 6.1945 2.8565 -1.2690 17 6 6.1996 4.2653 -1.8042 18 6 5.2504 4.8766 -2.5525 19 8 5.6963 6.1180 -2.7910 20 7 6.7741 6.3095 -2.2771 21 6 7.1949 5.2557 -1.6391 22 6 8.4893 5.1171 -0.8798 23 6 8.4666 6.0264 0.3217 24 6 8.3264 5.4933 1.5894 25 6 8.2999 6.3278 2.6911 26 6 8.4241 7.6947 2.5260 27 6 8.5643 8.2277 1.2583 28 6 8.5855 7.3936 0.1562 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7806 -0.8893 33 1 3.9557 0.7809 0.8907 34 1 3.6100 3.2367 0.8894 35 1 3.6107 3.2357 -0.8906 36 1 8.8518 1.7223 2.5260 37 1 5.7093 2.1965 -1.9879 38 1 7.2204 2.5257 -1.1069 39 1 4.3202 4.4470 -2.8939 40 1 9.3217 5.3917 -1.5276 41 1 8.6093 4.0846 -0.5518 42 1 8.2336 4.4251 1.7188 43 1 8.1859 5.9117 3.6812 44 1 8.4072 8.3464 3.3870 45 1 8.6568 9.2960 1.1289 46 1 8.6951 7.8102 -0.8343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:42 Heat of formation + Delta-G solvation = 9.268236 kcal Electronic energy + Delta-G solvation = -30778.943769 eV Core-core repulsion = 26637.403184 eV Total energy + Delta-G solvation = -4141.540584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.75570 -41.41076 -40.06750 -38.43869 -37.42164 -35.89597 -34.10311 -33.54723 -32.27471 -31.77055 -31.57284 -28.76241 -28.31955 -27.85929 -26.21099 -23.58461 -23.15472 -23.01276 -22.31360 -21.48740 -21.17826 -19.06091 -18.60622 -18.47048 -18.13287 -17.61650 -17.47139 -17.41813 -17.03966 -16.11994 -15.89782 -15.78389 -15.53952 -15.25908 -14.94562 -14.64016 -14.35989 -14.24457 -14.11912 -14.07309 -13.79546 -13.55940 -13.39321 -13.30882 -13.03862 -12.91407 -12.77260 -12.60156 -12.16755 -12.06282 -11.85204 -11.81905 -11.70197 -11.63164 -11.49283 -11.47775 -10.70111 -10.58369 -10.24146 -9.70417 -9.55773 -8.76106 -8.05274 -5.61246 0.45990 0.63370 0.72731 1.23402 1.33620 1.39614 1.49789 1.57175 1.85223 2.47371 2.52701 2.94601 3.22777 3.38251 3.40234 3.67323 3.97937 3.98810 4.03584 4.15603 4.21376 4.22830 4.28439 4.35072 4.37012 4.39982 4.46953 4.55096 4.59729 4.69957 4.72645 4.75140 4.79737 4.88342 4.92197 5.00356 5.03293 5.15058 5.23790 5.29385 5.37939 5.45332 5.61269 5.83221 5.89530 6.06427 6.27934 6.31093 6.78432 7.00462 7.45245 7.62967 8.06345 9.09152 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.004006 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.190312 B = 6987.636480 C = 7760.506942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.129 4.129 6 C 0.170 3.830 7 N -0.599 5.599 8 C -0.245 4.245 9 H 0.033 0.967 10 C 0.004 3.996 11 N -0.933 5.933 12 Si 0.922 3.078 13 H -0.280 1.280 14 H -0.317 1.317 15 H -0.235 1.235 16 C 0.198 3.802 17 C -0.214 4.214 18 C -0.049 4.049 19 O 0.091 5.909 20 N -0.386 5.386 21 C 0.027 3.973 22 C 0.003 3.997 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.137 4.137 26 C -0.124 4.124 27 C -0.134 4.134 28 C -0.116 4.116 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.251 0.749 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.114 0.886 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 0.328 -8.666 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.169 4.169 6 C 0.044 3.956 7 N -0.320 5.320 8 C -0.376 4.376 9 H 0.051 0.949 10 C -0.194 4.194 11 N -0.576 5.576 12 Si 0.751 3.249 13 H -0.207 1.207 14 H -0.246 1.246 15 H -0.158 1.158 16 C 0.073 3.927 17 C -0.221 4.221 18 C -0.131 4.131 19 O 0.027 5.973 20 N -0.091 5.091 21 C -0.131 4.131 22 C -0.035 4.035 23 C -0.097 4.097 24 C -0.139 4.139 25 C -0.155 4.155 26 C -0.141 4.141 27 C -0.152 4.152 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.267 0.733 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.164 0.836 43 H 0.132 0.868 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.275 1.780 -8.777 10.936 hybrid contribution 0.209 -1.508 0.432 1.582 sum -6.066 0.273 -8.346 10.321 Atomic orbital electron populations 1.23523 0.75088 1.05517 1.02462 1.86538 1.24932 1.33243 1.83812 1.24130 0.92393 0.81022 0.70819 1.90626 1.67952 1.37176 1.47021 1.22132 0.85624 1.02897 1.06242 1.20635 0.82534 0.91695 1.00737 1.44112 1.01565 1.85181 1.01174 1.18395 1.07856 1.19921 0.91380 0.94889 1.25953 0.97750 0.98238 0.97438 1.69802 1.15497 1.42041 1.30268 0.86208 0.79383 0.79551 0.79708 1.20692 1.24608 1.15771 1.19732 0.96876 0.88525 0.87586 1.22417 0.95203 1.01601 1.02860 1.26270 1.01888 0.84077 1.00856 1.84713 1.25800 1.30685 1.56127 1.73700 0.98135 1.23483 1.13797 1.23316 0.99666 0.90373 0.99793 1.18826 0.91827 0.99681 0.93120 1.19710 1.01707 0.94357 0.93916 1.22078 0.96131 1.03203 0.92443 1.21290 1.01100 0.94408 0.98728 1.21422 0.99817 0.94641 0.98267 1.21342 1.01200 1.00532 0.92120 1.21134 1.00237 0.92580 0.99430 0.91645 0.85211 0.92390 0.86589 0.88264 0.94378 0.91297 0.92924 0.89343 0.93016 0.73336 0.88629 0.90666 0.83640 0.86767 0.83784 0.83507 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.37 -9.42 10.56 -51.38 -0.54 -9.97 16 3 C 0.47 13.91 7.96 71.24 0.57 14.48 16 4 O -0.54 -18.21 15.73 21.95 0.35 -17.87 16 5 C -0.13 -3.89 6.14 29.85 0.18 -3.71 16 6 C 0.17 5.94 4.96 86.38 0.43 6.37 16 7 N -0.60 -24.14 2.04 -706.34 -1.44 -25.59 16 8 C -0.25 -12.16 9.31 84.03 0.78 -11.38 16 9 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 10 C 0.00 0.18 4.74 84.86 0.40 0.59 16 11 N -0.93 -51.06 12.44 21.65 0.27 -50.79 16 12 Si 0.92 39.73 24.65 68.60 1.69 41.42 16 13 H -0.28 -11.75 6.81 99.48 0.68 -11.07 16 14 H -0.32 -14.49 7.11 99.48 0.71 -13.79 16 15 H -0.23 -8.87 6.88 99.48 0.68 -8.18 16 16 C 0.20 7.11 4.34 85.63 0.37 7.48 16 17 C -0.21 -7.41 5.87 -19.73 -0.12 -7.53 16 18 C -0.05 -1.36 12.06 67.18 0.81 -0.55 16 19 O 0.09 2.89 11.20 71.66 0.80 3.69 16 20 N -0.39 -13.89 11.98 -49.54 -0.59 -14.48 16 21 C 0.03 1.01 6.48 43.58 0.28 1.30 16 22 C 0.00 0.13 5.97 29.10 0.17 0.30 16 23 C -0.10 -3.87 5.18 -19.87 -0.10 -3.97 16 24 C -0.12 -5.38 9.67 22.27 0.22 -5.17 16 25 C -0.14 -5.46 10.05 22.27 0.22 -5.24 16 26 C -0.12 -4.04 10.05 22.27 0.22 -3.81 16 27 C -0.13 -4.20 10.05 22.27 0.22 -3.97 16 28 C -0.12 -4.07 9.54 22.27 0.21 -3.86 16 29 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.04 1.52 8.00 -2.39 -0.02 1.50 16 35 H 0.07 2.11 7.82 -2.39 -0.02 2.09 16 36 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 37 H 0.09 2.56 8.13 -2.39 -0.02 2.54 16 38 H 0.05 2.07 2.74 -2.38 -0.01 2.07 16 39 H 0.25 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.07 3.19 6.95 -2.39 -0.02 3.18 16 42 H 0.15 7.39 4.72 -2.91 -0.01 7.38 16 43 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 44 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 45 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 46 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -64.23 386.17 7.55 -56.67 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.95 Total: 33.90 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 6.08 Total: -16.99 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -1.77 Total: -90.86 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.60 Total: -24.14 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.69 Total: 41.42 kcal Total: -64.23 7.55 -56.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.940 kcal (2) G-P(sol) polarization free energy of solvation -64.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds