Wall clock time and date at job start Wed Apr 1 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48501 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46985 * 300.00048 * 3 2 1 6 6 H 1.48501 * 109.47215 * 59.99789 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00419 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99639 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99957 * 185.05673 * 9 7 2 11 11 C 1.38878 * 120.06562 * 354.46026 * 10 9 7 12 12 C 1.38102 * 119.92530 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.07393 * 0.02778 * 12 11 10 14 14 C 1.50698 * 119.93488 * 179.97438 * 13 12 11 15 15 N 1.46495 * 109.47497 * 89.99772 * 14 13 12 16 16 C 1.35303 * 125.87145 * 125.00142 * 15 14 13 17 17 C 1.35357 * 106.17742 * 180.02562 * 16 15 14 18 18 C 1.50699 * 126.75118 * 179.97438 * 17 16 15 19 19 N 1.46901 * 109.46804 * 95.00258 * 18 17 16 20 20 C 1.47017 * 110.99733 * 170.00065 * 19 18 17 21 21 C 1.53100 * 109.25678 * 182.39140 * 20 19 18 22 22 O 1.43014 * 109.26028 * 303.14781 * 21 20 19 23 23 C 1.43022 * 113.73752 * 58.67082 * 22 21 20 24 24 C 1.47013 * 110.99965 * 293.62980 * 19 18 17 25 25 N 1.33770 * 106.49461 * 0.26058 * 17 16 15 26 26 N 1.28633 * 108.88472 * 359.56627 * 25 17 16 27 27 C 1.38303 * 120.13709 * 0.24513 * 13 12 11 28 28 C 1.38100 * 120.06628 * 359.46068 * 27 13 12 29 29 H 0.97000 * 119.99995 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03709 * 0.02562 * 11 10 9 31 31 H 1.08005 * 119.96059 * 180.02562 * 12 11 10 32 32 H 1.09007 * 109.46763 * 329.99304 * 14 13 12 33 33 H 1.09002 * 109.47339 * 210.00008 * 14 13 12 34 34 H 1.08002 * 126.91569 * 0.05845 * 16 15 14 35 35 H 1.08997 * 109.47126 * 334.99996 * 18 17 16 36 36 H 1.09002 * 109.47239 * 214.99796 * 18 17 16 37 37 H 1.08997 * 109.50815 * 62.45401 * 20 19 18 38 38 H 1.09004 * 109.50687 * 302.32740 * 20 19 18 39 39 H 1.09006 * 109.50301 * 183.21419 * 21 20 19 40 40 H 1.08997 * 109.53793 * 63.10773 * 21 20 19 41 41 H 1.09003 * 109.50574 * 61.26152 * 23 22 21 42 42 H 1.08996 * 109.50865 * 181.40124 * 23 22 21 43 43 H 1.09002 * 109.50930 * 297.54541 * 24 19 18 44 44 H 1.08997 * 109.50607 * 57.67972 * 24 19 18 45 45 H 1.07995 * 119.96750 * 179.70204 * 27 13 12 46 46 H 1.08005 * 120.03436 * 180.26902 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4571 -3.4394 0.0952 12 6 4.2022 -4.5971 0.2038 13 6 3.5685 -5.8204 0.3244 14 6 4.3846 -7.0818 0.4422 15 7 4.6553 -7.3582 1.8552 16 6 4.3670 -8.5080 2.5075 17 6 4.7829 -8.3321 3.7835 18 6 4.6839 -9.3286 4.9096 19 7 5.9447 -10.0752 5.0150 20 6 5.9766 -10.8848 6.2417 21 6 7.3280 -11.5975 6.3414 22 8 7.5328 -12.3867 5.1664 23 6 7.5085 -11.6299 3.9531 24 6 6.1590 -10.9175 3.8293 25 7 5.2933 -7.0974 3.8499 26 7 5.2079 -6.5487 2.6896 27 6 2.1872 -5.8891 0.3316 28 6 1.4364 -4.7345 0.2294 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4845 0.0005 31 1 5.2811 -4.5471 0.1945 32 1 5.3272 -6.9557 -0.0905 33 1 3.8310 -7.9146 0.0087 34 1 3.8996 -9.3891 2.0933 35 1 3.8667 -10.0219 4.7106 36 1 4.4942 -8.8022 5.8451 37 1 5.1765 -11.6243 6.2107 38 1 5.8416 -10.2378 7.1085 39 1 7.3349 -12.2434 7.2194 40 1 8.1245 -10.8584 6.4269 41 1 8.3099 -10.8912 3.9687 42 1 7.6459 -12.2991 3.1038 43 1 5.3617 -11.6576 3.7597 44 1 6.1571 -10.2943 2.9350 45 1 1.6951 -6.8463 0.4211 46 1 0.3578 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881286097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:51 Heat of formation + Delta-G solvation = 65.889603 kcal Electronic energy + Delta-G solvation = -28727.377670 eV Core-core repulsion = 24620.585124 eV Total energy + Delta-G solvation = -4106.792546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.14279 -39.82586 -39.20777 -37.06825 -36.31039 -34.38210 -32.41493 -31.85039 -31.34763 -30.40806 -30.18800 -28.36322 -26.44465 -25.20627 -24.88811 -24.37172 -22.19832 -22.09299 -21.39903 -20.81116 -20.21772 -18.13438 -17.37927 -17.08881 -16.88761 -16.44054 -16.30234 -15.57990 -15.37190 -15.24748 -14.82343 -14.78180 -14.60730 -14.47441 -14.14378 -13.76706 -13.64516 -13.47530 -12.95924 -12.91345 -12.84194 -12.38212 -12.33888 -11.77892 -11.74517 -11.63641 -11.47183 -11.41786 -11.15709 -10.99137 -10.94574 -10.78249 -10.62603 -10.49435 -10.07458 -9.86578 -9.46829 -9.20886 -8.96158 -8.69491 -8.34045 -7.42144 -6.57236 -4.15577 1.65745 1.85953 2.09287 2.53435 2.76181 3.07525 3.09458 3.14709 3.46929 3.62984 3.87988 4.21005 4.40459 4.52142 4.56486 4.61789 4.68851 4.79458 4.84180 4.90133 4.92596 4.98735 5.00918 5.11759 5.18640 5.21311 5.23817 5.29004 5.41314 5.46313 5.48888 5.58366 5.59110 5.62577 5.91330 6.06118 6.12891 6.25221 6.50202 6.58054 6.59790 6.69021 6.73358 6.78067 6.89436 7.03547 7.19767 7.29898 7.63916 7.87678 8.69880 8.88123 9.54448 10.60031 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.001825 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.096096 B =15341.510181 C =15646.668690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.393 4.393 8 H 0.096 0.904 9 O -0.170 6.170 10 C 0.166 3.834 11 C -0.237 4.237 12 C -0.030 4.030 13 C -0.227 4.227 14 C 0.173 3.827 15 N -0.276 5.276 16 C -0.055 4.055 17 C -0.022 4.022 18 C 0.146 3.854 19 N -0.531 5.531 20 C 0.019 3.981 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.017 3.983 25 N -0.262 5.262 26 N -0.067 5.067 27 C -0.051 4.051 28 C -0.197 4.197 29 H 0.272 0.728 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.182 0.818 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.644 -22.920 5.873 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.113 0.887 9 O -0.072 6.072 10 C 0.110 3.890 11 C -0.256 4.256 12 C -0.049 4.049 13 C -0.229 4.229 14 C 0.054 3.946 15 N -0.069 5.069 16 C -0.208 4.208 17 C -0.161 4.161 18 C 0.017 3.983 19 N -0.256 5.256 20 C -0.109 4.109 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.013 4.013 24 C -0.111 4.111 25 N -0.128 5.128 26 N -0.046 5.046 27 C -0.070 4.070 28 C -0.216 4.216 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.199 0.801 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.128 0.872 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.229 -21.128 6.031 24.675 hybrid contribution -0.900 -0.431 -0.428 1.086 sum 10.328 -21.558 5.603 24.553 Atomic orbital electron populations 1.70042 1.06054 1.27902 1.45101 1.25351 0.95894 0.99037 0.96194 0.85606 0.79241 0.80016 0.78372 1.18913 1.20020 1.19967 1.21450 0.92002 0.80600 1.52832 0.88696 1.83972 1.34669 1.11654 1.76888 1.19443 0.90361 0.88011 0.91158 1.21153 0.93703 0.99013 1.11733 1.20587 0.98531 0.91380 0.94420 1.18918 0.93344 0.93050 1.17597 1.20840 1.01004 0.98175 0.74591 1.47900 1.37536 1.09566 1.11891 1.23324 1.09535 0.93888 0.94034 1.21562 1.05020 0.95183 0.94378 1.20166 0.89670 0.92373 0.96121 1.62106 1.34879 1.26558 1.02077 1.22790 0.98232 0.96378 0.93517 1.22670 0.95717 0.94804 0.88153 1.87975 1.93091 1.34984 1.14554 1.22661 0.96127 0.95235 0.87269 1.22814 0.97971 0.95718 0.94598 1.75090 1.17747 1.06454 1.13554 1.78389 1.14483 1.17533 0.94232 1.20434 0.92531 0.96893 0.97118 1.20156 0.99645 0.90198 1.11612 0.91836 0.85192 0.87096 0.88353 0.87841 0.80128 0.92968 0.88775 0.93811 0.89244 0.88401 0.92108 0.92226 0.88509 0.93864 0.89577 0.87211 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 8 H 0.10 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.17 -4.74 9.76 0.03 0.00 -4.74 16 10 C 0.17 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.24 -5.01 9.17 -39.39 -0.36 -5.37 16 12 C -0.03 -0.54 9.69 -39.61 -0.38 -0.92 16 13 C -0.23 -3.55 5.25 -104.58 -0.55 -4.10 16 14 C 0.17 1.96 6.58 -5.20 -0.03 1.93 16 15 N -0.28 -3.67 3.43 -62.44 -0.21 -3.88 16 16 C -0.06 -0.61 10.46 -17.05 -0.18 -0.79 16 17 C -0.02 -0.28 5.99 -82.78 -0.50 -0.77 16 18 C 0.15 1.41 5.53 -4.98 -0.03 1.38 16 19 N -0.53 -4.96 4.72 -235.74 -1.11 -6.07 16 20 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 21 C 0.06 0.47 7.01 37.21 0.26 0.73 16 22 O -0.39 -3.60 10.83 -35.23 -0.38 -3.98 16 23 C 0.06 0.51 7.01 37.21 0.26 0.77 16 24 C 0.02 0.14 5.44 -3.71 -0.02 0.12 16 25 N -0.26 -4.35 12.41 33.29 0.41 -3.94 16 26 N -0.07 -1.13 12.92 60.35 0.78 -0.35 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 28 C -0.20 -3.98 9.99 -39.39 -0.39 -4.38 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 31 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.10 0.82 8.01 -51.93 -0.42 0.40 16 34 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.09 0.91 8.04 -51.93 -0.42 0.50 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.74 6.45 -51.93 -0.34 0.40 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -33.59 384.71 -7.73 -41.32 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.36 Total: 2.90 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.39 Total: -18.35 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.63 Total: -38.13 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.38 Total: -8.72 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.59 -7.73 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881286097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.212 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds