Wall clock time and date at job start Wed Apr 1 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48501 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46985 * 300.00048 * 3 2 1 6 6 H 1.48501 * 109.47215 * 59.99789 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00419 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99639 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99957 * 185.05673 * 9 7 2 11 11 C 1.38878 * 120.06562 * 354.46026 * 10 9 7 12 12 C 1.38102 * 119.92530 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.07393 * 0.02778 * 12 11 10 14 14 C 1.50698 * 119.93488 * 179.97438 * 13 12 11 15 15 N 1.46495 * 109.47497 * 89.99772 * 14 13 12 16 16 C 1.35303 * 125.87145 * 125.00142 * 15 14 13 17 17 C 1.35357 * 106.17742 * 180.02562 * 16 15 14 18 18 C 1.50699 * 126.75118 * 179.97438 * 17 16 15 19 19 N 1.46901 * 109.46804 * 95.00258 * 18 17 16 20 20 C 1.47017 * 110.99733 * 170.00065 * 19 18 17 21 21 C 1.53100 * 109.25678 * 182.39140 * 20 19 18 22 22 O 1.43014 * 109.26028 * 303.14781 * 21 20 19 23 23 C 1.43022 * 113.73752 * 58.67082 * 22 21 20 24 24 C 1.47013 * 110.99965 * 293.62980 * 19 18 17 25 25 N 1.33770 * 106.49461 * 0.26058 * 17 16 15 26 26 N 1.28633 * 108.88472 * 359.56627 * 25 17 16 27 27 C 1.38303 * 120.13709 * 0.24513 * 13 12 11 28 28 C 1.38100 * 120.06628 * 359.46068 * 27 13 12 29 29 H 0.97000 * 119.99995 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03709 * 0.02562 * 11 10 9 31 31 H 1.08005 * 119.96059 * 180.02562 * 12 11 10 32 32 H 1.09007 * 109.46763 * 329.99304 * 14 13 12 33 33 H 1.09002 * 109.47339 * 210.00008 * 14 13 12 34 34 H 1.08002 * 126.91569 * 0.05845 * 16 15 14 35 35 H 1.08997 * 109.47126 * 334.99996 * 18 17 16 36 36 H 1.09002 * 109.47239 * 214.99796 * 18 17 16 37 37 H 1.08997 * 109.50815 * 62.45401 * 20 19 18 38 38 H 1.09004 * 109.50687 * 302.32740 * 20 19 18 39 39 H 1.09006 * 109.50301 * 183.21419 * 21 20 19 40 40 H 1.08997 * 109.53793 * 63.10773 * 21 20 19 41 41 H 1.09003 * 109.50574 * 61.26152 * 23 22 21 42 42 H 1.08996 * 109.50865 * 181.40124 * 23 22 21 43 43 H 1.09002 * 109.50930 * 297.54541 * 24 19 18 44 44 H 1.08997 * 109.50607 * 57.67972 * 24 19 18 45 45 H 1.07995 * 119.96750 * 179.70204 * 27 13 12 46 46 H 1.08005 * 120.03436 * 180.26902 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4571 -3.4394 0.0952 12 6 4.2022 -4.5971 0.2038 13 6 3.5685 -5.8204 0.3244 14 6 4.3846 -7.0818 0.4422 15 7 4.6553 -7.3582 1.8552 16 6 4.3670 -8.5080 2.5075 17 6 4.7829 -8.3321 3.7835 18 6 4.6839 -9.3286 4.9096 19 7 5.9447 -10.0752 5.0150 20 6 5.9766 -10.8848 6.2417 21 6 7.3280 -11.5975 6.3414 22 8 7.5328 -12.3867 5.1664 23 6 7.5085 -11.6299 3.9531 24 6 6.1590 -10.9175 3.8293 25 7 5.2933 -7.0974 3.8499 26 7 5.2079 -6.5487 2.6896 27 6 2.1872 -5.8891 0.3316 28 6 1.4364 -4.7345 0.2294 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4845 0.0005 31 1 5.2811 -4.5471 0.1945 32 1 5.3272 -6.9557 -0.0905 33 1 3.8310 -7.9146 0.0087 34 1 3.8996 -9.3891 2.0933 35 1 3.8667 -10.0219 4.7106 36 1 4.4942 -8.8022 5.8451 37 1 5.1765 -11.6243 6.2107 38 1 5.8416 -10.2378 7.1085 39 1 7.3349 -12.2434 7.2194 40 1 8.1245 -10.8584 6.4269 41 1 8.3099 -10.8912 3.9687 42 1 7.6459 -12.2991 3.1038 43 1 5.3617 -11.6576 3.7597 44 1 6.1571 -10.2943 2.9350 45 1 1.6951 -6.8463 0.4211 46 1 0.3578 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881286097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:50 Heat of formation + Delta-G solvation = 41.125207 kcal Electronic energy + Delta-G solvation = -28728.451535 eV Core-core repulsion = 24620.585124 eV Total energy + Delta-G solvation = -4107.866411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.13547 -40.86642 -40.43143 -38.63439 -37.03817 -35.52791 -34.31144 -32.64389 -32.00091 -31.91109 -31.56379 -29.12568 -27.93935 -26.87665 -25.62436 -24.96536 -23.73453 -23.28303 -22.46871 -21.70500 -21.16881 -19.91134 -18.93338 -18.14553 -17.78293 -17.24251 -17.06931 -16.51391 -16.32623 -16.20604 -15.95991 -15.92151 -15.87508 -15.61220 -15.49375 -15.15375 -14.81738 -14.58841 -14.36757 -14.08304 -13.73192 -13.56279 -13.32958 -13.10546 -12.98356 -12.65885 -12.57250 -12.41152 -12.36857 -12.33435 -12.19313 -12.13848 -11.65875 -11.50175 -11.25979 -10.95480 -10.86662 -10.66409 -10.13548 -9.85943 -9.31928 -9.09677 -8.53450 -6.21790 0.39459 0.53659 0.79332 1.32318 1.39000 1.50417 1.55642 1.74050 2.13284 2.78623 2.86171 3.03188 3.10816 3.39007 3.43680 3.64693 3.86601 3.92064 3.99975 4.04767 4.08355 4.11957 4.20095 4.23637 4.29388 4.36900 4.38651 4.50107 4.53019 4.65099 4.67049 4.72876 4.75890 4.84662 4.91921 4.95261 4.99746 5.05501 5.10698 5.18832 5.24813 5.45399 5.63443 5.65037 5.76641 5.95811 5.96617 6.00087 6.10841 6.19695 6.91366 7.67648 7.69118 8.69429 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.001825 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.096096 B =15341.510181 C =15646.668690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.228 6.228 10 C 0.125 3.875 11 C -0.250 4.250 12 C -0.035 4.035 13 C -0.195 4.195 14 C 0.170 3.830 15 N -0.277 5.277 16 C -0.032 4.032 17 C -0.033 4.033 18 C 0.149 3.851 19 N -0.550 5.550 20 C 0.021 3.979 21 C 0.061 3.939 22 O -0.403 6.403 23 C 0.062 3.938 24 C 0.021 3.979 25 N -0.302 5.302 26 N -0.119 5.119 27 C -0.040 4.040 28 C -0.211 4.211 29 H 0.274 0.726 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.231 0.769 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.159 0.841 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.056 -26.968 5.723 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.134 6.134 10 C 0.074 3.926 11 C -0.270 4.270 12 C -0.053 4.053 13 C -0.197 4.197 14 C 0.052 3.948 15 N -0.070 5.070 16 C -0.185 4.185 17 C -0.173 4.173 18 C 0.020 3.980 19 N -0.276 5.276 20 C -0.106 4.106 21 C -0.016 4.016 22 O -0.322 6.322 23 C -0.015 4.015 24 C -0.106 4.106 25 N -0.168 5.168 26 N -0.098 5.098 27 C -0.058 4.058 28 C -0.230 4.230 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.174 0.826 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.133 0.867 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.177 0.823 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.690 -25.222 5.885 28.841 hybrid contribution -1.158 0.324 -0.306 1.241 sum 11.532 -24.898 5.579 28.000 Atomic orbital electron populations 1.70172 1.07955 1.28895 1.48404 1.26589 0.96884 1.02727 0.95681 0.84540 0.78195 0.74846 0.78713 1.17662 1.18952 1.19367 1.21856 0.92504 0.81379 1.53357 0.88178 1.83939 1.36077 1.12694 1.80640 1.20038 0.91553 0.88132 0.92904 1.21235 0.93200 1.00063 1.12467 1.20930 0.99646 0.91141 0.93626 1.19475 0.93633 0.94367 1.12229 1.21166 1.02096 0.97359 0.74174 1.47895 1.37090 1.10004 1.12020 1.24037 1.07322 0.94068 0.93029 1.22107 1.04625 0.94414 0.96145 1.20199 0.90650 0.92233 0.94945 1.62061 1.34966 1.27486 1.03120 1.22804 0.98373 0.96412 0.93054 1.22790 0.95463 0.94944 0.88358 1.87955 1.93181 1.35793 1.15285 1.22750 0.95844 0.95339 0.87549 1.22789 0.98214 0.95651 0.93993 1.75030 1.19094 1.08602 1.14082 1.78356 1.17110 1.19233 0.95067 1.20957 0.92865 0.97379 0.94616 1.20484 1.00199 0.90490 1.11852 0.91681 0.86612 0.84819 0.86238 0.82580 0.75217 0.90443 0.89607 0.92999 0.88725 0.86494 0.93029 0.93519 0.86717 0.92676 0.89786 0.82314 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 13.67 21.61 0.30 -55.89 16 2 C -0.02 -1.19 5.49 84.84 0.47 -0.72 16 3 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.42 -24.33 9.49 67.92 0.64 -23.68 16 8 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -13.68 9.76 -22.80 -0.22 -13.90 16 10 C 0.13 6.15 6.65 22.58 0.15 6.31 16 11 C -0.25 -10.93 9.17 22.39 0.21 -10.72 16 12 C -0.03 -1.18 9.69 22.25 0.22 -0.96 16 13 C -0.20 -5.34 5.25 -19.84 -0.10 -5.45 16 14 C 0.17 2.83 6.58 85.63 0.56 3.39 16 15 N -0.28 -6.09 3.43 -351.47 -1.21 -7.29 16 16 C -0.03 -0.53 10.46 83.49 0.87 0.34 16 17 C -0.03 -0.72 5.99 41.60 0.25 -0.47 16 18 C 0.15 2.42 5.53 85.56 0.47 2.90 16 19 N -0.55 -8.88 4.72 -899.76 -4.24 -13.12 16 20 C 0.02 0.27 5.64 86.31 0.49 0.75 16 21 C 0.06 0.79 7.01 72.02 0.50 1.30 16 22 O -0.40 -6.65 10.83 -148.98 -1.61 -8.26 16 23 C 0.06 0.85 7.01 72.02 0.50 1.35 16 24 C 0.02 0.28 5.44 86.32 0.47 0.75 16 25 N -0.30 -9.58 12.41 -48.60 -0.60 -10.18 16 26 N -0.12 -3.75 12.92 37.02 0.48 -3.27 16 27 C -0.04 -1.17 9.69 22.25 0.22 -0.95 16 28 C -0.21 -8.55 9.99 22.39 0.22 -8.33 16 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 31 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.12 1.62 8.08 -2.38 -0.02 1.60 16 33 H 0.16 1.10 8.01 -2.39 -0.02 1.08 16 34 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 36 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 37 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 39 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 1.11 6.45 -2.39 -0.02 1.09 16 45 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 46 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -82.53 384.71 2.05 -80.48 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.00 Total: 20.33 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 6.14 Total: -34.19 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -5.28 Total: -89.76 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.84 Total: -22.16 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -82.53 2.05 -80.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881286097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.604 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds