Wall clock time and date at job start Wed Apr 1 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86793 * 120.00090 * 2 1 4 4 H 1.48498 * 109.47229 * 240.00170 * 3 2 1 5 5 H 1.48499 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47087 * 120.00173 * 3 2 1 7 7 C 1.38655 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99746 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.35757 * 117.00214 * 185.06187 * 9 7 2 11 11 C 1.38881 * 120.06340 * 354.46160 * 10 9 7 12 12 C 1.38099 * 119.92740 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.06970 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.93364 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.47187 * 89.99817 * 14 13 12 16 16 C 1.35312 * 125.87008 * 125.00622 * 15 14 13 17 17 C 1.35348 * 106.17695 * 180.02562 * 16 15 14 18 18 C 1.50701 * 126.75361 * 179.97438 * 17 16 15 19 19 H 1.09007 * 109.46724 * 4.99909 * 18 17 16 20 20 N 1.46901 * 109.47288 * 245.00026 * 18 17 16 21 21 C 1.52998 * 109.47184 * 124.99558 * 18 17 16 22 22 H 1.09002 * 109.81804 * 59.44191 * 21 18 17 23 23 C 1.54380 * 109.82814 * 180.41397 * 21 18 17 24 24 C 1.55303 * 102.24922 * 140.87519 * 23 21 18 25 25 C 1.54948 * 100.94362 * 325.86582 * 24 23 21 26 26 O 1.43229 * 109.83336 * 298.55050 * 21 18 17 27 27 N 1.33773 * 106.49641 * 0.25789 * 17 16 15 28 28 N 1.28633 * 108.88712 * 359.56969 * 27 17 16 29 29 C 1.38304 * 120.14112 * 0.27678 * 13 12 11 30 30 C 1.38104 * 120.06520 * 359.48868 * 29 13 12 31 31 H 0.96995 * 120.00082 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.03961 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.96563 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.46536 * 330.00274 * 14 13 12 35 35 H 1.08996 * 109.47364 * 209.99922 * 14 13 12 36 36 H 1.07999 * 126.91162 * 0.04344 * 16 15 14 37 37 H 1.00894 * 110.99887 * 300.00129 * 20 18 17 38 38 H 1.00903 * 110.99631 * 63.95182 * 20 18 17 39 39 H 1.09001 * 110.84525 * 259.05998 * 23 21 18 40 40 H 1.09001 * 110.85396 * 22.48156 * 23 21 18 41 41 H 1.09002 * 111.12344 * 207.94578 * 24 23 21 42 42 H 1.09003 * 111.12847 * 83.78364 * 24 23 21 43 43 H 1.09000 * 110.30463 * 277.53106 * 25 24 23 44 44 H 1.09001 * 110.30991 * 155.35923 * 25 24 23 45 45 H 1.07995 * 119.96648 * 179.72397 * 29 13 12 46 46 H 1.07997 * 120.03589 * 180.25614 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4571 -3.4395 0.0922 12 6 4.2023 -4.5971 0.2009 13 6 3.5686 -5.8202 0.3236 14 6 4.3849 -7.0816 0.4415 15 7 4.6575 -7.3566 1.8544 16 6 4.3701 -8.5058 2.5083 17 6 4.7877 -8.3286 3.7835 18 6 4.6902 -9.3241 4.9108 19 1 4.3036 -10.2689 4.5287 20 7 3.7839 -8.8062 5.9444 21 6 6.0780 -9.5479 5.5148 22 1 6.4744 -8.6043 5.8899 23 6 5.9894 -10.5746 6.6643 24 6 7.2865 -11.4051 6.4650 25 6 7.4121 -11.3884 4.9207 26 8 6.9594 -10.0849 4.5218 27 7 5.2982 -7.0938 3.8479 28 7 5.2113 -6.5462 2.6873 29 6 2.1873 -5.8889 0.3322 30 6 1.4365 -4.7344 0.2287 31 1 -0.4850 0.8400 0.0004 32 1 3.9526 -2.4846 -0.0024 33 1 5.2811 -4.5471 0.1909 34 1 5.3268 -6.9560 -0.0925 35 1 3.8306 -7.9148 0.0096 36 1 3.9019 -9.3872 2.0956 37 1 4.1207 -7.9301 6.3146 38 1 2.8451 -8.7108 5.5872 39 1 5.9941 -10.0742 7.6326 40 1 5.1037 -11.2010 6.5576 41 1 7.1631 -12.4218 6.8382 42 1 8.1411 -10.9175 6.9339 43 1 6.7793 -12.1596 4.4814 44 1 8.4506 -11.5356 4.6240 45 1 1.6954 -6.8460 0.4236 46 1 0.3579 -4.7883 0.2395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881286313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:36 Heat of formation + Delta-G solvation = 50.491638 kcal Electronic energy + Delta-G solvation = -28945.269125 eV Core-core repulsion = 24837.808873 eV Total energy + Delta-G solvation = -4107.460252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.08865 -39.76690 -39.19781 -37.04912 -35.72530 -34.06612 -32.39987 -32.28380 -30.66293 -30.30549 -30.02825 -29.29290 -26.43158 -25.21896 -25.14756 -22.51587 -22.23532 -22.09738 -21.55233 -20.96993 -19.93645 -18.12670 -17.34379 -17.16967 -16.95983 -16.59444 -16.26516 -15.63437 -15.10964 -14.77694 -14.68309 -14.55840 -14.36371 -14.19533 -14.00386 -13.77754 -13.60835 -13.37385 -13.00195 -12.84183 -12.44930 -12.33596 -11.97053 -11.73838 -11.63557 -11.49159 -11.42761 -11.33769 -11.13634 -11.08017 -10.94811 -10.80538 -10.66351 -10.52344 -9.90368 -9.74403 -9.47038 -9.29850 -8.95565 -8.87150 -8.33500 -7.41413 -6.56409 -4.14965 1.73444 1.89488 2.09800 2.64671 2.80277 3.08302 3.10864 3.12512 3.51719 3.88620 4.25683 4.28620 4.35258 4.42394 4.59174 4.67186 4.68385 4.87575 4.89194 4.94305 5.00759 5.05113 5.12819 5.15182 5.25325 5.31212 5.42486 5.45965 5.49224 5.59380 5.60129 5.64307 5.74232 5.89708 6.04028 6.06499 6.18682 6.26065 6.50851 6.72792 6.73901 6.75367 6.89694 6.92501 7.04182 7.18898 7.20312 7.30220 7.64493 7.88177 8.71985 8.88601 9.54901 10.60683 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.001977 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.589217 B =14159.986637 C =14447.137132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.165 3.835 11 C -0.237 4.237 12 C -0.031 4.031 13 C -0.226 4.226 14 C 0.173 3.827 15 N -0.276 5.276 16 C -0.047 4.047 17 C -0.060 4.060 18 C 0.174 3.826 19 H 0.094 0.906 20 N -0.829 5.829 21 C 0.094 3.906 22 H 0.085 0.915 23 C -0.134 4.134 24 C -0.161 4.161 25 C 0.048 3.952 26 O -0.372 6.372 27 N -0.272 5.272 28 N -0.067 5.067 29 C -0.051 4.051 30 C -0.197 4.197 31 H 0.273 0.727 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.182 0.818 37 H 0.349 0.651 38 H 0.347 0.653 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.273 -22.707 7.596 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.110 3.890 11 C -0.256 4.256 12 C -0.050 4.050 13 C -0.228 4.228 14 C 0.054 3.946 15 N -0.069 5.069 16 C -0.200 4.200 17 C -0.200 4.200 18 C 0.060 3.940 19 H 0.112 0.888 20 N -0.359 5.359 21 C 0.035 3.965 22 H 0.103 0.897 23 C -0.172 4.172 24 C -0.198 4.198 25 C -0.028 4.028 26 O -0.290 6.290 27 N -0.139 5.139 28 N -0.046 5.046 29 C -0.070 4.070 30 C -0.216 4.216 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.199 0.801 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.128 0.872 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.676 -21.623 7.939 25.388 hybrid contribution -0.272 0.480 -0.929 1.080 sum 10.404 -21.144 7.010 24.585 Atomic orbital electron populations 1.70025 1.06041 1.28113 1.44954 1.25344 0.95895 0.99016 0.96180 0.85741 0.78742 0.79412 0.79377 1.19349 1.20152 1.19302 1.21346 0.91936 0.80633 1.53047 0.88833 1.83970 1.34617 1.11624 1.76933 1.19439 0.90352 0.88012 0.91203 1.21149 0.93705 0.98988 1.11763 1.20588 0.98530 0.91393 0.94441 1.18930 0.93345 0.93072 1.17455 1.20829 1.00965 0.98126 0.74717 1.47862 1.37559 1.09680 1.11815 1.23335 1.09058 0.93676 0.93893 1.22796 1.05127 0.96075 0.96016 1.20025 0.93603 0.94129 0.86277 0.88828 1.59000 1.05619 1.36174 1.35083 1.22598 0.88703 0.97760 0.87397 0.89722 1.23006 0.97766 0.97265 0.99174 1.23319 0.98737 1.01282 0.96502 1.23380 0.99760 0.85825 0.93879 1.88501 1.63991 1.31409 1.45094 1.74983 1.18259 1.06666 1.13969 1.78327 1.14421 1.17618 0.94272 1.20434 0.92526 0.96882 0.97164 1.20151 0.99629 0.90199 1.11638 0.91739 0.85214 0.87121 0.88414 0.87853 0.80128 0.83778 0.84006 0.89873 0.89955 0.90060 0.90524 0.92392 0.90004 0.87225 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 13.67 55.48 0.76 -23.97 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.84 9.49 30.89 0.29 -10.54 16 8 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 9 O -0.17 -4.75 9.76 0.04 0.00 -4.75 16 10 C 0.17 3.91 6.65 -39.11 -0.26 3.65 16 11 C -0.24 -5.07 9.17 -39.39 -0.36 -5.43 16 12 C -0.03 -0.55 9.69 -39.61 -0.38 -0.94 16 13 C -0.23 -3.63 5.25 -104.57 -0.55 -4.18 16 14 C 0.17 2.09 6.58 -5.19 -0.03 2.06 16 15 N -0.28 -3.89 3.43 -62.44 -0.21 -4.10 16 16 C -0.05 -0.57 11.49 -17.05 -0.20 -0.77 16 17 C -0.06 -0.78 5.74 -82.78 -0.48 -1.25 16 18 C 0.17 1.74 2.88 -68.86 -0.20 1.54 16 19 H 0.09 0.82 8.12 -51.92 -0.42 0.39 16 20 N -0.83 -7.51 8.84 -5.65 -0.05 -7.56 16 21 C 0.09 0.95 3.23 -26.01 -0.08 0.87 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 23 C -0.13 -1.01 6.18 -24.79 -0.15 -1.16 16 24 C -0.16 -1.04 7.16 -24.48 -0.18 -1.21 16 25 C 0.05 0.38 7.78 38.19 0.30 0.68 16 26 O -0.37 -4.30 10.69 -35.23 -0.38 -4.67 16 27 N -0.27 -4.49 12.40 33.29 0.41 -4.08 16 28 N -0.07 -1.16 12.92 60.35 0.78 -0.38 16 29 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 30 C -0.20 -4.02 9.99 -39.39 -0.39 -4.42 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 33 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.10 0.90 8.01 -51.93 -0.42 0.49 16 36 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.35 3.47 8.99 -39.29 -0.35 3.11 16 38 H 0.35 2.95 9.06 -39.29 -0.36 2.60 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -33.07 389.40 -7.30 -40.37 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.31 Total: 9.35 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -3.15 Total: -21.32 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 1.69 Total: -40.09 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.38 Total: -9.43 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.07 -7.30 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881286313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.863 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds