Wall clock time and date at job start Wed Apr 1 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42889 * 114.00019 * 2 1 4 4 C 1.53003 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.67634 * 181.12462 * 4 3 2 6 6 C 1.53292 * 109.70955 * 301.66458 * 4 3 2 7 7 O 1.42966 * 109.22096 * 172.04401 * 6 4 3 8 8 C 1.42956 * 114.16629 * 297.41952 * 7 6 4 9 9 C 1.52880 * 109.30010 * 62.44951 * 8 7 6 10 10 N 1.47150 * 109.68044 * 60.61045 * 4 3 2 11 11 C 1.34774 * 120.98266 * 9.68036 * 10 4 3 12 12 O 1.21663 * 120.00321 * 353.48920 * 11 10 4 13 13 C 1.46892 * 119.99622 * 173.76084 * 11 10 4 14 14 C 1.36121 * 125.44012 * 332.98744 * 13 11 10 15 15 C 1.41703 * 107.74810 * 179.97438 * 14 13 11 16 16 C 1.40026 * 133.34732 * 180.02562 * 15 14 13 17 17 C 1.36573 * 119.82979 * 180.02562 * 16 15 14 18 18 C 1.38862 * 120.59975 * 359.92928 * 17 16 15 19 19 C 1.37848 * 120.63423 * 0.03413 * 18 17 16 20 20 C 1.39085 * 119.80861 * 0.02562 * 19 18 17 21 21 N 1.37845 * 133.15627 * 180.29342 * 20 19 18 22 22 C 1.36881 * 125.62408 * 359.95491 * 21 20 19 23 23 H 1.08001 * 120.00169 * 215.87772 * 22 21 20 24 24 C 1.39009 * 120.00287 * 35.86759 * 22 21 20 25 25 N 1.31351 * 119.99758 * 22.02922 * 24 22 21 26 26 Si 1.86804 * 120.00351 * 202.02281 * 24 22 21 27 27 H 1.48494 * 109.47032 * 5.01321 * 26 24 22 28 28 H 1.48496 * 109.46791 * 125.01590 * 26 24 22 29 29 H 1.48499 * 109.47052 * 245.01236 * 26 24 22 30 30 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47592 * 299.99942 * 1 2 3 32 32 H 1.09001 * 109.47463 * 60.00281 * 1 2 3 33 33 H 1.08996 * 109.47638 * 59.99984 * 3 2 1 34 34 H 1.09002 * 109.47249 * 300.00123 * 3 2 1 35 35 H 1.09005 * 109.51167 * 291.96198 * 6 4 3 36 36 H 1.08995 * 109.51294 * 52.06764 * 6 4 3 37 37 H 1.09000 * 109.51653 * 182.50636 * 8 7 6 38 38 H 1.09008 * 109.51258 * 302.60561 * 8 7 6 39 39 H 1.09009 * 109.61943 * 188.11790 * 9 8 7 40 40 H 1.08996 * 109.52545 * 67.69691 * 9 8 7 41 41 H 1.07994 * 126.12310 * 359.97438 * 14 13 11 42 42 H 1.07993 * 120.08573 * 359.95296 * 16 15 14 43 43 H 1.07994 * 119.70506 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.68125 * 180.02562 * 18 17 16 45 45 H 1.07996 * 120.09309 * 180.02562 * 19 18 17 46 46 H 0.97000 * 120.00077 * 184.91040 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 1 3.9823 2.1785 0.0195 6 6 3.9915 0.3883 1.2273 7 8 5.3922 0.1220 1.1220 8 6 5.7515 -0.6848 -0.0021 9 6 5.3843 0.0515 -1.2906 10 7 3.9753 0.4678 -1.2082 11 6 3.1119 0.1957 -2.2066 12 8 1.9273 0.4367 -2.0691 13 6 3.6002 -0.3972 -3.4587 14 6 4.8570 -0.2549 -3.9619 15 6 4.9199 -0.9793 -5.1781 16 6 5.9354 -1.1927 -6.1183 17 6 5.6892 -1.9583 -7.2222 18 6 4.4395 -2.5300 -7.4216 19 6 3.4243 -2.3349 -6.5097 20 6 3.6508 -1.5580 -5.3785 21 7 2.8586 -1.1934 -4.3110 22 6 1.5521 -1.5577 -4.1267 23 1 0.8561 -0.8640 -3.6785 24 6 1.1209 -2.8204 -4.5165 25 7 1.9877 -3.7985 -4.6489 26 14 -0.6911 -3.1265 -4.8519 27 1 -1.4363 -1.8461 -4.7511 28 1 -0.8538 -3.6878 -6.2171 29 1 -1.2235 -4.0890 -3.8543 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6885 1.8463 -0.8900 35 1 3.7981 0.9683 2.1297 36 1 3.4437 -0.5528 1.2750 37 1 6.8243 -0.8770 0.0157 38 1 5.2115 -1.6307 0.0411 39 1 5.5214 -0.6131 -2.1438 40 1 6.0205 0.9294 -1.4025 41 1 5.6619 0.3090 -3.5143 42 1 6.9104 -0.7521 -5.9716 43 1 6.4737 -2.1212 -7.9463 44 1 4.2613 -3.1331 -8.2996 45 1 2.4559 -2.7840 -6.6733 46 1 1.6989 -4.6597 -4.9890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886873215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:47 Heat of formation + Delta-G solvation = -23.288765 kcal Electronic energy + Delta-G solvation = -32104.423058 eV Core-core repulsion = 27961.470696 eV Total energy + Delta-G solvation = -4142.952362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.76025 -39.75527 -37.77821 -36.91984 -35.77157 -34.50332 -33.61560 -32.18476 -30.63517 -28.99516 -28.68639 -27.56147 -26.52076 -25.25408 -24.90313 -23.27698 -22.68783 -21.38105 -20.60719 -19.85053 -18.80445 -17.74127 -16.72195 -16.44622 -16.11702 -15.67315 -15.25445 -15.21912 -15.17912 -15.12092 -14.75932 -14.64435 -14.07772 -13.89362 -13.71727 -13.31326 -13.01881 -12.91382 -12.66848 -12.42129 -12.17793 -12.07840 -11.80747 -11.78576 -11.30376 -11.27420 -11.25230 -11.17550 -10.75965 -10.72859 -10.56973 -10.49192 -10.22659 -9.94202 -9.78090 -9.20259 -9.04424 -8.72619 -8.53199 -8.03732 -7.20141 -6.83733 -6.55476 -4.39302 1.87756 2.75729 3.00281 3.03307 3.07817 3.14653 3.21020 3.83721 3.90050 4.16779 4.23595 4.66353 4.71816 4.84332 5.07409 5.09285 5.15690 5.23751 5.41239 5.45547 5.51634 5.58163 5.71152 5.76768 5.82656 5.86105 5.92715 5.96253 6.00212 6.11474 6.12417 6.14599 6.17914 6.32313 6.54869 6.67247 6.81418 6.92938 7.03579 7.09649 7.17250 7.17936 7.49543 7.58561 7.65462 7.68568 7.81181 7.97995 8.11528 8.41530 8.77957 8.98654 9.33115 10.18532 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.005433 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.935194 B = 5152.102237 C = 7238.754822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.365 6.365 3 C 0.072 3.928 4 C 0.122 3.878 5 H 0.087 0.913 6 C 0.054 3.946 7 O -0.386 6.386 8 C 0.047 3.953 9 C 0.058 3.942 10 N -0.608 5.608 11 C 0.598 3.402 12 O -0.511 6.511 13 C -0.019 4.019 14 C -0.223 4.223 15 C -0.121 4.121 16 C -0.093 4.093 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.049 4.049 20 C 0.079 3.921 21 N -0.225 5.225 22 C -0.337 4.337 23 H 0.122 0.878 24 C 0.052 3.948 25 N -0.814 5.814 26 Si 0.922 3.078 27 H -0.260 1.260 28 H -0.272 1.272 29 H -0.274 1.274 30 H 0.075 0.925 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 5.877 6.346 9.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.284 6.284 3 C -0.005 4.005 4 C 0.018 3.982 5 H 0.104 0.896 6 C -0.024 4.024 7 O -0.304 6.304 8 C -0.031 4.031 9 C -0.064 4.064 10 N -0.345 5.345 11 C 0.389 3.611 12 O -0.386 6.386 13 C -0.137 4.137 14 C -0.250 4.250 15 C -0.126 4.126 16 C -0.112 4.112 17 C -0.174 4.174 18 C -0.176 4.176 19 C -0.069 4.069 20 C -0.035 4.035 21 N 0.115 4.885 22 C -0.465 4.465 23 H 0.139 0.861 24 C -0.161 4.161 25 N -0.443 5.443 26 Si 0.746 3.254 27 H -0.184 1.184 28 H -0.197 1.197 29 H -0.200 1.200 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.088 0.912 41 H 0.150 0.850 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.813 5.558 6.647 9.109 hybrid contribution -1.055 -0.327 -0.314 1.148 sum 1.758 5.230 6.333 8.400 Atomic orbital electron populations 1.22463 0.81754 1.01860 0.98758 1.87898 1.19093 1.26397 1.94978 1.22519 0.90812 0.87218 0.99947 1.21908 0.94676 0.95846 0.85741 0.89574 1.22978 0.82090 1.00429 0.96902 1.87885 1.23715 1.71769 1.47066 1.22962 1.01099 0.93651 0.85367 1.22932 0.81877 1.00876 1.00752 1.47599 1.10040 1.59196 1.17625 1.17110 0.84769 0.77469 0.81743 1.90678 1.15692 1.52068 1.80204 1.19607 0.91757 1.08082 0.94230 1.20475 0.95321 1.10117 0.99110 1.17941 0.94119 1.03315 0.97184 1.20010 0.96973 1.00087 0.94172 1.20260 0.96777 1.01887 0.98453 1.20531 0.93653 1.03662 0.99759 1.20113 0.98938 0.96102 0.91743 1.18110 0.91102 1.03329 0.90997 1.39962 1.08244 1.29598 1.10705 1.20154 0.83153 0.99590 1.43610 0.86058 1.25627 1.00976 0.94087 0.95364 1.70076 1.36598 1.02374 1.35225 0.85945 0.81506 0.79369 0.78576 1.18358 1.19725 1.19958 0.90629 0.95836 0.93781 0.94877 0.90249 0.88442 0.91453 0.87914 0.92492 0.85601 0.91223 0.85042 0.87920 0.88039 0.87795 0.87052 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 10.60 101.05 1.07 1.84 16 2 O -0.37 -6.69 7.54 -60.14 -0.45 -7.14 16 3 C 0.07 1.11 4.68 37.16 0.17 1.29 16 4 C 0.12 1.79 3.47 -67.42 -0.23 1.56 16 5 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 6 C 0.05 0.73 6.23 37.31 0.23 0.96 16 7 O -0.39 -5.47 10.74 -35.23 -0.38 -5.85 16 8 C 0.05 0.63 6.97 37.10 0.26 0.89 16 9 C 0.06 0.87 5.15 -3.75 -0.02 0.85 16 10 N -0.61 -10.56 3.01 -166.45 -0.50 -11.06 16 11 C 0.60 12.88 7.17 -12.76 -0.09 12.78 16 12 O -0.51 -11.68 9.12 -19.69 -0.18 -11.86 16 13 C -0.02 -0.44 6.30 -82.24 -0.52 -0.96 16 14 C -0.22 -4.71 8.39 -39.02 -0.33 -5.04 16 15 C -0.12 -2.75 6.16 -106.89 -0.66 -3.41 16 16 C -0.09 -1.85 10.06 -39.51 -0.40 -2.25 16 17 C -0.15 -2.95 9.97 -39.95 -0.40 -3.35 16 18 C -0.16 -3.19 10.02 -39.49 -0.40 -3.58 16 19 C -0.05 -1.17 8.55 -39.41 -0.34 -1.51 16 20 C 0.08 1.99 6.11 -83.83 -0.51 1.48 16 21 N -0.23 -5.89 2.85 -56.08 -0.16 -6.05 16 22 C -0.34 -8.97 9.17 -15.01 -0.14 -9.11 16 23 H 0.12 3.32 6.69 -52.49 -0.35 2.97 16 24 C 0.05 1.32 4.28 -17.47 -0.07 1.25 16 25 N -0.81 -21.20 10.98 55.50 0.61 -20.59 16 26 Si 0.92 19.40 29.61 -169.99 -5.03 14.37 16 27 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 28 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 29 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.04 0.75 7.88 -51.93 -0.41 0.34 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 1.38 6.25 -51.93 -0.32 1.06 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.04 7.43 -51.93 -0.39 0.66 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.13 2.07 4.37 -51.92 -0.23 1.84 16 40 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 41 H 0.13 2.30 6.09 -52.49 -0.32 1.98 16 42 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.11 2.72 6.33 -52.49 -0.33 2.39 16 46 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -30.33 361.11 -9.16 -39.49 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.13 Total: 9.56 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.37 Total: -6.31 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.05 Total: -37.70 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.01 Total: -24.85 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.33 -9.16 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886873215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.201 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds