Wall clock time and date at job start Wed Apr 1 2020 02:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42889 * 114.00019 * 2 1 4 4 C 1.53003 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.67634 * 181.12462 * 4 3 2 6 6 C 1.53292 * 109.70955 * 301.66458 * 4 3 2 7 7 O 1.42966 * 109.22096 * 172.04401 * 6 4 3 8 8 C 1.42956 * 114.16629 * 297.41952 * 7 6 4 9 9 C 1.52880 * 109.30010 * 62.44951 * 8 7 6 10 10 N 1.47150 * 109.68044 * 60.61045 * 4 3 2 11 11 C 1.34774 * 120.98266 * 9.68036 * 10 4 3 12 12 O 1.21663 * 120.00321 * 353.48920 * 11 10 4 13 13 C 1.46892 * 119.99622 * 173.76084 * 11 10 4 14 14 C 1.36121 * 125.44012 * 332.98744 * 13 11 10 15 15 C 1.41703 * 107.74810 * 179.97438 * 14 13 11 16 16 C 1.40026 * 133.34732 * 180.02562 * 15 14 13 17 17 C 1.36573 * 119.82979 * 180.02562 * 16 15 14 18 18 C 1.38862 * 120.59975 * 359.92928 * 17 16 15 19 19 C 1.37848 * 120.63423 * 0.03413 * 18 17 16 20 20 C 1.39085 * 119.80861 * 0.02562 * 19 18 17 21 21 N 1.37845 * 133.15627 * 180.29342 * 20 19 18 22 22 C 1.36881 * 125.62408 * 359.95491 * 21 20 19 23 23 H 1.08001 * 120.00169 * 215.87772 * 22 21 20 24 24 C 1.39009 * 120.00287 * 35.86759 * 22 21 20 25 25 N 1.31351 * 119.99758 * 22.02922 * 24 22 21 26 26 Si 1.86804 * 120.00351 * 202.02281 * 24 22 21 27 27 H 1.48494 * 109.47032 * 5.01321 * 26 24 22 28 28 H 1.48496 * 109.46791 * 125.01590 * 26 24 22 29 29 H 1.48499 * 109.47052 * 245.01236 * 26 24 22 30 30 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47592 * 299.99942 * 1 2 3 32 32 H 1.09001 * 109.47463 * 60.00281 * 1 2 3 33 33 H 1.08996 * 109.47638 * 59.99984 * 3 2 1 34 34 H 1.09002 * 109.47249 * 300.00123 * 3 2 1 35 35 H 1.09005 * 109.51167 * 291.96198 * 6 4 3 36 36 H 1.08995 * 109.51294 * 52.06764 * 6 4 3 37 37 H 1.09000 * 109.51653 * 182.50636 * 8 7 6 38 38 H 1.09008 * 109.51258 * 302.60561 * 8 7 6 39 39 H 1.09009 * 109.61943 * 188.11790 * 9 8 7 40 40 H 1.08996 * 109.52545 * 67.69691 * 9 8 7 41 41 H 1.07994 * 126.12310 * 359.97438 * 14 13 11 42 42 H 1.07993 * 120.08573 * 359.95296 * 16 15 14 43 43 H 1.07994 * 119.70506 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.68125 * 180.02562 * 18 17 16 45 45 H 1.07996 * 120.09309 * 180.02562 * 19 18 17 46 46 H 0.97000 * 120.00077 * 184.91040 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 1 3.9823 2.1785 0.0195 6 6 3.9915 0.3883 1.2273 7 8 5.3922 0.1220 1.1220 8 6 5.7515 -0.6848 -0.0021 9 6 5.3843 0.0515 -1.2906 10 7 3.9753 0.4678 -1.2082 11 6 3.1119 0.1957 -2.2066 12 8 1.9273 0.4367 -2.0691 13 6 3.6002 -0.3972 -3.4587 14 6 4.8570 -0.2549 -3.9619 15 6 4.9199 -0.9793 -5.1781 16 6 5.9354 -1.1927 -6.1183 17 6 5.6892 -1.9583 -7.2222 18 6 4.4395 -2.5300 -7.4216 19 6 3.4243 -2.3349 -6.5097 20 6 3.6508 -1.5580 -5.3785 21 7 2.8586 -1.1934 -4.3110 22 6 1.5521 -1.5577 -4.1267 23 1 0.8561 -0.8640 -3.6785 24 6 1.1209 -2.8204 -4.5165 25 7 1.9877 -3.7985 -4.6489 26 14 -0.6911 -3.1265 -4.8519 27 1 -1.4363 -1.8461 -4.7511 28 1 -0.8538 -3.6878 -6.2171 29 1 -1.2235 -4.0890 -3.8543 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6885 1.8463 -0.8900 35 1 3.7981 0.9683 2.1297 36 1 3.4437 -0.5528 1.2750 37 1 6.8243 -0.8770 0.0157 38 1 5.2115 -1.6307 0.0411 39 1 5.5214 -0.6131 -2.1438 40 1 6.0205 0.9294 -1.4025 41 1 5.6619 0.3090 -3.5143 42 1 6.9104 -0.7521 -5.9716 43 1 6.4737 -2.1212 -7.9463 44 1 4.2613 -3.1331 -8.2996 45 1 2.4559 -2.7840 -6.6733 46 1 1.6989 -4.6597 -4.9890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886873215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:46 Heat of formation + Delta-G solvation = -41.066410 kcal Electronic energy + Delta-G solvation = -32105.193954 eV Core-core repulsion = 27961.470696 eV Total energy + Delta-G solvation = -4143.723258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.35324 -41.19028 -39.10455 -38.30329 -37.39910 -35.97226 -35.30639 -33.45198 -32.34651 -30.67219 -30.12217 -29.02545 -27.76128 -26.82460 -26.41052 -24.80519 -23.91245 -22.93361 -22.13740 -21.48523 -20.34076 -19.42606 -18.08780 -17.79183 -17.39374 -17.34326 -16.85476 -16.63590 -16.53247 -16.35060 -16.26401 -16.10485 -15.52170 -15.23277 -15.19059 -14.92811 -14.62872 -14.56410 -14.15531 -13.90296 -13.65989 -13.60000 -13.35329 -13.12710 -12.95140 -12.88143 -12.53838 -12.42214 -12.34101 -12.21149 -12.02447 -11.91675 -11.70548 -11.43699 -11.15587 -10.87872 -10.56176 -10.33687 -10.09997 -9.36981 -8.99145 -8.60015 -8.29312 -6.33341 0.21838 1.09464 1.27137 1.32168 1.41608 1.51222 1.74847 2.11503 2.47240 2.82369 2.90850 3.00684 3.06544 3.39243 3.69193 3.75657 3.98304 4.07558 4.14639 4.27655 4.28073 4.35995 4.39770 4.43879 4.54185 4.55498 4.59987 4.66667 4.73510 4.80601 4.83812 4.86245 4.88091 4.88663 4.99799 5.04336 5.16291 5.23346 5.37537 5.47574 5.60166 5.78435 5.92854 5.98726 6.07513 6.24996 6.29330 6.42241 6.49264 6.59082 7.01442 7.37504 7.51055 8.34220 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.005433 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.935194 B = 5152.102237 C = 7238.754822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.395 6.395 3 C 0.072 3.928 4 C 0.117 3.883 5 H 0.116 0.884 6 C 0.060 3.940 7 O -0.385 6.385 8 C 0.051 3.949 9 C 0.055 3.945 10 N -0.604 5.604 11 C 0.587 3.413 12 O -0.536 6.536 13 C -0.046 4.046 14 C -0.198 4.198 15 C -0.147 4.147 16 C -0.086 4.086 17 C -0.155 4.155 18 C -0.141 4.141 19 C -0.092 4.092 20 C 0.053 3.947 21 N -0.260 5.260 22 C -0.366 4.366 23 H 0.097 0.903 24 C 0.018 3.982 25 N -0.847 5.847 26 Si 0.982 3.018 27 H -0.265 1.265 28 H -0.259 1.259 29 H -0.269 1.269 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.133 0.867 36 H 0.041 0.959 37 H 0.138 0.862 38 H 0.033 0.967 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.171 0.829 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.456 7.017 6.809 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.314 6.314 3 C -0.005 4.005 4 C 0.014 3.986 5 H 0.134 0.866 6 C -0.018 4.018 7 O -0.303 6.303 8 C -0.027 4.027 9 C -0.067 4.067 10 N -0.339 5.339 11 C 0.377 3.623 12 O -0.413 6.413 13 C -0.163 4.163 14 C -0.225 4.225 15 C -0.152 4.152 16 C -0.104 4.104 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.112 4.112 20 C -0.061 4.061 21 N 0.078 4.922 22 C -0.494 4.494 23 H 0.115 0.885 24 C -0.191 4.191 25 N -0.477 5.477 26 Si 0.803 3.197 27 H -0.189 1.189 28 H -0.184 1.184 29 H -0.194 1.194 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.060 0.940 37 H 0.155 0.845 38 H 0.051 0.949 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.188 0.812 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.149 0.851 45 H 0.108 0.892 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.687 6.711 7.139 11.329 hybrid contribution -1.731 -0.589 -0.466 1.887 sum 3.956 6.123 6.673 9.883 Atomic orbital electron populations 1.22469 0.81111 1.01684 0.99374 1.87849 1.20072 1.28300 1.95130 1.22576 0.91414 0.86105 1.00393 1.22253 0.94335 0.97098 0.84886 0.86616 1.22999 0.81585 0.99550 0.97621 1.87896 1.23761 1.71584 1.47044 1.23011 1.02773 0.92266 0.84613 1.23078 0.80799 1.01937 1.00849 1.47678 1.10576 1.58367 1.17315 1.17181 0.85086 0.77731 0.82286 1.90674 1.16762 1.53151 1.80760 1.20300 0.92880 1.07746 0.95335 1.20928 0.95152 1.08497 0.97914 1.18438 0.94112 1.04025 0.98586 1.20488 0.97698 0.99137 0.93105 1.20739 0.96975 1.00659 0.99046 1.20967 0.93478 1.02358 0.99283 1.20178 0.99443 0.98295 0.93248 1.18670 0.92289 1.03849 0.91326 1.40115 1.08472 1.31550 1.12026 1.19980 0.84014 0.99849 1.45520 0.88523 1.26343 1.04588 0.93354 0.94808 1.70133 1.38198 1.02643 1.36713 0.85085 0.76788 0.78875 0.78960 1.18873 1.18353 1.19382 0.91327 0.92303 0.95882 0.91155 0.92894 0.84972 0.94013 0.84479 0.94883 0.87396 0.88020 0.81191 0.83895 0.83629 0.85114 0.89228 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.66 10.60 113.37 1.20 2.86 16 2 O -0.39 -14.86 7.54 -125.17 -0.94 -15.81 16 3 C 0.07 2.18 4.68 71.98 0.34 2.52 16 4 C 0.12 3.23 3.47 44.97 0.16 3.39 16 5 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 6 C 0.06 1.49 6.23 72.08 0.45 1.94 16 7 O -0.38 -9.76 10.74 -148.98 -1.60 -11.36 16 8 C 0.05 1.26 6.97 71.94 0.50 1.76 16 9 C 0.06 1.52 5.15 86.21 0.44 1.96 16 10 N -0.60 -20.60 3.01 -798.75 -2.41 -23.01 16 11 C 0.59 26.18 7.17 86.51 0.62 26.80 16 12 O -0.54 -26.03 9.12 19.58 0.18 -25.85 16 13 C -0.05 -2.24 6.30 39.91 0.25 -1.99 16 14 C -0.20 -8.24 8.39 22.63 0.19 -8.05 16 15 C -0.15 -6.58 6.16 -21.34 -0.13 -6.72 16 16 C -0.09 -3.12 10.06 22.31 0.22 -2.90 16 17 C -0.16 -5.39 9.97 22.03 0.22 -5.17 16 18 C -0.14 -5.59 10.02 22.33 0.22 -5.36 16 19 C -0.09 -4.49 8.55 22.38 0.19 -4.30 16 20 C 0.05 2.75 6.11 39.06 0.24 2.99 16 21 N -0.26 -14.37 2.85 -331.34 -0.94 -15.32 16 22 C -0.37 -21.03 9.17 84.09 0.77 -20.26 16 23 H 0.10 5.82 6.69 -2.91 -0.02 5.80 16 24 C 0.02 0.98 4.28 84.95 0.36 1.35 16 25 N -0.85 -46.71 10.98 21.67 0.24 -46.47 16 26 Si 0.98 42.29 29.61 68.60 2.03 44.32 16 27 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 28 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.02 0.83 7.88 -2.39 -0.02 0.81 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.90 6.25 -2.39 -0.01 1.89 16 35 H 0.13 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.04 1.27 7.43 -2.39 -0.02 1.25 16 37 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.11 3.39 4.37 -2.38 -0.01 3.38 16 40 H 0.10 2.19 8.12 -2.39 -0.02 2.17 16 41 H 0.17 5.48 6.09 -2.91 -0.02 5.46 16 42 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 43 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 45 H 0.09 4.66 6.33 -2.91 -0.02 4.65 16 46 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -72.68 361.11 3.81 -68.87 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 1.01 Total: 33.78 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 6.25 Total: -9.17 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.11 Total: -84.79 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -2.37 Total: -53.01 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -72.68 3.81 -68.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886873215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.800 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds