Wall clock time and date at job start Wed Apr 1 2020 02:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99806 * 2 1 4 4 O 1.20825 * 120.00009 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99976 * 179.97438 * 3 2 1 6 6 C 1.50704 * 112.82572 * 309.66973 * 5 3 2 7 7 O 1.21272 * 119.99979 * 230.33613 * 6 5 3 8 8 N 1.34781 * 119.99892 * 50.32714 * 6 5 3 9 9 C 1.39270 * 119.99853 * 185.35954 * 8 6 5 10 10 C 1.39666 * 119.57288 * 185.25793 * 9 8 6 11 11 C 1.38651 * 119.49604 * 180.02562 * 10 9 8 12 12 C 1.38349 * 118.67110 * 359.97438 * 11 10 9 13 13 C 1.40583 * 119.12495 * 0.02562 * 12 11 10 14 14 C 1.41336 * 119.78270 * 180.25500 * 13 12 11 15 15 H 1.07997 * 120.00053 * 354.49579 * 14 13 12 16 16 C 1.40024 * 119.99728 * 174.49955 * 14 13 12 17 17 N 1.30737 * 120.00224 * 354.77897 * 16 14 13 18 18 Si 1.86806 * 120.00089 * 174.77616 * 16 14 13 19 19 H 1.48499 * 109.46882 * 94.99804 * 18 16 14 20 20 H 1.48497 * 109.47097 * 215.00115 * 18 16 14 21 21 H 1.48504 * 109.47027 * 335.00181 * 18 16 14 22 22 N 1.31902 * 119.57398 * 5.27443 * 9 8 6 23 23 C 1.53946 * 113.58207 * 80.75815 * 5 3 2 24 24 C 1.53069 * 86.72631 * 89.97269 * 23 5 3 25 25 C 1.52911 * 121.17261 * 150.58958 * 24 23 5 26 26 C 1.53949 * 86.78247 * 100.75186 * 25 24 23 27 27 C 1.52912 * 121.06859 * 259.12690 * 24 23 5 28 28 C 1.52910 * 88.06571 * 24.83956 * 24 23 5 29 29 H 1.09009 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47325 * 299.99566 * 1 2 3 31 31 H 1.09001 * 109.46859 * 60.00202 * 1 2 3 32 32 H 0.96996 * 119.99930 * 5.36406 * 8 6 5 33 33 H 1.07999 * 120.25287 * 359.97267 * 10 9 8 34 34 H 1.08005 * 120.66632 * 180.02562 * 11 10 9 35 35 H 1.07994 * 120.43779 * 180.02562 * 12 11 10 36 36 H 0.97005 * 120.00621 * 180.02562 * 17 16 14 37 37 H 1.09000 * 113.66497 * 204.42103 * 23 5 3 38 38 H 1.09009 * 113.66047 * 335.47745 * 23 5 3 39 39 H 1.09003 * 113.65818 * 215.22267 * 25 24 23 40 40 H 1.08997 * 113.66419 * 346.28057 * 25 24 23 41 41 H 1.08997 * 113.58141 * 270.13076 * 26 25 24 42 42 H 1.09006 * 113.65273 * 139.34494 * 26 25 24 43 43 H 1.08997 * 113.66437 * 13.63151 * 27 24 23 44 44 H 1.08996 * 113.66123 * 144.69169 * 27 24 23 45 45 H 1.09008 * 113.65860 * 220.69107 * 28 24 23 46 46 H 1.08993 * 113.66630 * 89.63907 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1961 0.4203 1.0702 7 8 5.0251 0.8961 1.8165 8 7 3.8379 -0.8728 1.1974 9 6 4.3349 -1.6324 2.2536 10 6 4.0474 -2.9977 2.3159 11 6 4.5426 -3.7524 3.3684 12 6 5.3126 -3.1241 4.3310 13 6 5.5667 -1.7465 4.2121 14 6 6.3560 -1.0918 5.1846 15 1 6.6875 -1.6281 6.0614 16 6 6.7081 0.2524 5.0113 17 7 6.3945 0.8727 3.9040 18 14 7.6259 1.1592 6.3622 19 1 9.0846 1.1097 6.0887 20 1 7.1773 2.5743 6.4015 21 1 7.3453 0.5144 7.6702 22 7 5.0709 -1.0531 3.1823 23 6 4.1937 1.0806 -1.3917 24 6 4.0785 2.5978 -1.5587 25 6 5.0651 3.3752 -2.4308 26 6 3.9724 3.3753 -3.5153 27 6 2.9463 3.2177 -2.3784 28 6 4.1075 2.7157 -0.0344 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.2339 -1.2744 0.5533 33 1 3.4432 -3.4620 1.5506 34 1 4.3323 -4.8096 3.4350 35 1 5.7131 -3.6845 5.1627 36 1 6.6387 1.8038 3.7837 37 1 5.2221 0.7206 -1.3618 38 1 3.5652 0.5150 -2.0797 39 1 5.3003 4.3679 -2.0467 40 1 5.9523 2.8038 -2.7037 41 1 4.0199 2.5144 -4.1821 42 1 3.8880 4.3209 -4.0509 43 1 2.1410 2.5205 -2.6095 44 1 2.5862 4.1661 -1.9797 45 1 3.4102 3.4547 0.3605 46 1 5.1115 2.8160 0.3776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893869566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:29 Heat of formation + Delta-G solvation = -14.184052 kcal Electronic energy + Delta-G solvation = -31344.548794 eV Core-core repulsion = 27201.991242 eV Total energy + Delta-G solvation = -4142.557552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65776 -39.58809 -39.00167 -37.43062 -36.49388 -34.58364 -34.09660 -33.00904 -30.32094 -29.29004 -28.20645 -26.24897 -25.91751 -25.75688 -25.31797 -22.55065 -22.48245 -21.36734 -20.46891 -19.28187 -18.33487 -17.85630 -17.19873 -16.88143 -16.49989 -16.04793 -15.71650 -15.36946 -14.69389 -14.64384 -14.43885 -14.19955 -14.06000 -13.62552 -13.27898 -13.22182 -13.02508 -12.77508 -12.62317 -12.27031 -12.19494 -12.06877 -11.93328 -11.79015 -11.31261 -11.17929 -10.96967 -10.93495 -10.83648 -10.65571 -10.61680 -10.47291 -10.27691 -10.17083 -10.01259 -9.95326 -9.66132 -9.01030 -8.98224 -7.97289 -7.25612 -6.95668 -6.18235 -4.38941 2.08257 2.52474 2.78886 3.06090 3.17890 3.20397 3.27014 3.67111 3.75043 4.06535 4.20083 4.39471 4.42425 4.52302 4.70475 4.76633 4.88881 4.97094 5.03642 5.11816 5.29754 5.35860 5.45444 5.53977 5.60008 5.68218 5.75849 5.81564 5.84220 5.88908 6.03557 6.09371 6.12409 6.20096 6.28577 6.38157 6.40626 6.50416 6.68034 6.84491 6.85726 7.23463 7.55532 7.61853 7.69945 7.81604 8.05778 8.19059 8.46604 8.73054 9.03852 9.17774 10.23074 10.47370 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.004084 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.153111 B = 6854.597839 C = 8314.115091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.356 6.356 3 C 0.494 3.506 4 O -0.494 6.494 5 C -0.109 4.109 6 C 0.493 3.507 7 O -0.395 6.395 8 N -0.657 5.657 9 C 0.373 3.627 10 C -0.353 4.353 11 C -0.036 4.036 12 C -0.305 4.305 13 C 0.274 3.726 14 C -0.427 4.427 15 H 0.082 0.918 16 C 0.061 3.939 17 N -0.661 5.661 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.263 1.263 22 N -0.477 5.477 23 C -0.082 4.082 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.142 4.142 27 C -0.108 4.108 28 C -0.081 4.081 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.404 0.596 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.273 0.727 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 3.354 -13.863 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.336 3.664 4 O -0.380 6.380 5 C -0.114 4.114 6 C 0.272 3.728 7 O -0.258 6.258 8 N -0.305 5.305 9 C 0.134 3.866 10 C -0.379 4.379 11 C -0.060 4.060 12 C -0.328 4.328 13 C 0.148 3.852 14 C -0.457 4.457 15 H 0.100 0.900 16 C -0.168 4.168 17 N -0.279 5.279 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.187 1.187 22 N -0.196 5.196 23 C -0.119 4.119 24 C -0.111 4.111 25 C -0.159 4.159 26 C -0.179 4.179 27 C -0.145 4.145 28 C -0.118 4.118 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.240 0.760 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.672 5.198 -13.465 15.901 hybrid contribution -0.549 -0.855 0.357 1.077 sum -7.221 4.343 -13.108 15.583 Atomic orbital electron populations 1.23279 0.76022 1.03865 1.02434 1.86438 1.23626 1.33154 1.83997 1.22660 0.90247 0.81507 0.72009 1.90629 1.66416 1.36215 1.44762 1.22120 0.88272 1.01668 0.99330 1.19813 0.84965 0.82637 0.85340 1.91151 1.26599 1.70445 1.37565 1.43396 1.48374 1.10737 1.27953 1.18577 0.92559 0.86960 0.88480 1.20486 1.18188 0.93600 1.05616 1.20566 0.94985 0.97056 0.93433 1.21627 1.11294 0.96709 1.03177 1.18351 0.89494 0.87816 0.89492 1.19571 1.26100 0.95313 1.04763 0.89951 1.26138 0.96294 0.98219 0.96158 1.70255 1.26641 1.10099 1.20937 0.86514 0.80061 0.79244 0.82221 1.19724 1.20247 1.18704 1.68586 1.12960 1.35395 1.02682 1.22672 1.02134 0.95551 0.91563 1.22542 0.98554 0.95068 0.94896 1.22704 0.96705 1.00514 0.95994 1.22859 0.96936 1.01719 0.96387 1.22602 0.95440 1.00977 0.95462 1.22719 1.03097 0.91347 0.94639 0.87887 0.91805 0.91981 0.76025 0.89013 0.88611 0.88557 0.91549 0.87547 0.90207 0.89686 0.91142 0.90394 0.91604 0.91987 0.89510 0.89650 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.86 8.59 -39.25 -0.34 -5.20 16 3 C 0.49 7.59 6.53 36.00 0.24 7.82 16 4 O -0.49 -8.14 14.70 -18.75 -0.28 -8.41 16 5 C -0.11 -1.70 1.19 -155.83 -0.19 -1.88 16 6 C 0.49 10.01 6.85 -10.98 -0.08 9.94 16 7 O -0.39 -9.73 11.78 5.56 0.07 -9.67 16 8 N -0.66 -13.26 5.07 -11.40 -0.06 -13.32 16 9 C 0.37 9.12 7.42 -154.98 -1.15 7.97 16 10 C -0.35 -7.95 9.95 -38.90 -0.39 -8.33 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.30 -7.67 9.83 -38.66 -0.38 -8.05 16 13 C 0.27 7.67 6.53 -85.00 -0.56 7.12 16 14 C -0.43 -11.73 9.13 -37.74 -0.34 -12.07 16 15 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 16 C 0.06 1.60 5.48 -17.35 -0.10 1.50 16 17 N -0.66 -18.13 9.12 55.55 0.51 -17.63 16 18 Si 0.90 19.25 29.56 -169.99 -5.03 14.22 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 22 N -0.48 -13.35 5.80 -10.26 -0.06 -13.41 16 23 C -0.08 -1.01 6.98 -26.20 -0.18 -1.19 16 24 C -0.11 -1.31 0.97 -154.63 -0.15 -1.46 16 25 C -0.12 -1.22 7.84 -26.28 -0.21 -1.43 16 26 C -0.14 -1.28 8.08 -25.75 -0.21 -1.48 16 27 C -0.11 -1.16 6.63 -26.28 -0.17 -1.34 16 28 C -0.08 -1.19 6.54 -26.28 -0.17 -1.36 16 29 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.40 6.78 7.02 -40.82 -0.29 6.50 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 36 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 37 H 0.11 1.34 8.09 -51.93 -0.42 0.92 16 38 H 0.08 0.85 8.09 -51.92 -0.42 0.43 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.31 7.40 -51.92 -0.38 0.93 16 46 H 0.11 1.80 7.44 -51.93 -0.39 1.41 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -32.67 378.24 -9.36 -42.03 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.52 Total: 9.69 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.36 Total: -4.02 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.39 Total: -44.36 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.55 Total: -23.28 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.67 -9.36 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893869566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.849 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds