Wall clock time and date at job start Wed Apr 1 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34845 * 116.99855 * 2 1 4 4 O 1.21568 * 120.00119 * 0.02562 * 3 2 1 5 5 C 1.46899 * 120.00107 * 180.02562 * 3 2 1 6 6 N 1.38195 * 125.43763 * 0.02738 * 5 3 2 7 7 H 0.97000 * 125.61099 * 359.71876 * 6 5 3 8 8 C 1.37469 * 108.78058 * 179.97438 * 6 5 3 9 9 C 1.39229 * 133.16540 * 180.02562 * 8 6 5 10 10 C 1.37665 * 119.81589 * 180.02562 * 9 8 6 11 11 C 1.38947 * 120.64674 * 359.95528 * 10 9 8 12 12 C 1.36432 * 120.62352 * 0.02562 * 11 10 9 13 13 C 1.40125 * 119.82669 * 359.97438 * 12 11 10 14 14 C 1.35951 * 125.44309 * 180.02562 * 5 3 2 15 15 C 1.50696 * 126.13755 * 359.97438 * 14 5 3 16 16 N 1.46901 * 109.47026 * 90.02704 * 15 14 5 17 17 C 1.47445 * 111.00129 * 69.87050 * 16 15 14 18 18 C 1.54315 * 107.23398 * 123.25730 * 17 16 15 19 19 C 1.55137 * 103.01855 * 22.28539 * 18 17 16 20 20 O 1.42904 * 110.99007 * 82.47480 * 19 18 17 21 21 C 1.50698 * 110.99306 * 206.25342 * 19 18 17 22 22 H 1.08003 * 119.99881 * 118.54696 * 21 19 18 23 23 C 1.37876 * 119.99935 * 298.54494 * 21 19 18 24 24 N 1.31513 * 120.00167 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99830 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47151 * 90.00243 * 25 23 21 27 27 H 1.48504 * 109.47235 * 209.99966 * 25 23 21 28 28 H 1.48504 * 109.47532 * 330.00439 * 25 23 21 29 29 C 1.47840 * 111.00236 * 190.71573 * 16 15 14 30 30 H 1.08997 * 109.47452 * 59.99391 * 1 2 3 31 31 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46938 * 299.99479 * 1 2 3 33 33 H 1.08007 * 120.09370 * 359.96544 * 9 8 6 34 34 H 1.07994 * 119.68129 * 179.97438 * 10 9 8 35 35 H 1.08008 * 119.69053 * 180.02562 * 11 10 9 36 36 H 1.07997 * 120.08920 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.47210 * 210.02087 * 15 14 5 38 38 H 1.08998 * 109.47596 * 330.02664 * 15 14 5 39 39 H 1.09003 * 109.89040 * 242.66829 * 17 16 15 40 40 H 1.09006 * 109.88694 * 3.85344 * 17 16 15 41 41 H 1.09001 * 110.70727 * 140.66673 * 18 17 16 42 42 H 1.09002 * 110.70899 * 263.73146 * 18 17 16 43 43 H 0.96699 * 114.00449 * 61.45450 * 20 19 18 44 44 H 0.97003 * 119.99796 * 179.97438 * 24 23 21 45 45 H 1.09005 * 110.37419 * 332.46199 * 29 16 15 46 46 H 1.08996 * 110.37522 * 94.80364 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4020 2.2210 0.0005 5 6 3.5311 1.2784 -0.0006 6 7 4.3902 0.1960 -0.0017 7 1 4.1237 -0.7366 0.0017 8 6 5.6848 0.6585 -0.0025 9 6 6.9234 0.0226 -0.0042 10 6 8.0778 0.7726 -0.0041 11 6 8.0205 2.1609 -0.0033 12 6 6.8189 2.8069 -0.0020 13 6 5.6294 2.0662 -0.0021 14 6 4.2603 2.4258 -0.0001 15 6 3.7100 3.8287 0.0005 16 7 3.5318 4.2842 1.3857 17 6 4.8340 4.5042 2.0412 18 6 4.8550 5.9653 2.5375 19 6 3.3485 6.3215 2.6390 20 8 2.7936 5.8533 3.8698 21 6 3.1327 7.8047 2.4824 22 1 2.5373 8.1803 1.6633 23 6 3.6952 8.6822 3.3849 24 7 4.4205 8.2249 4.3821 25 14 3.4283 10.5208 3.1904 26 1 2.2089 10.9255 3.9352 27 1 4.6032 11.2514 3.7301 28 1 3.2605 10.8472 1.7515 29 6 2.7614 5.5451 1.4339 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 6.9784 -1.0560 -0.0045 34 1 9.0374 0.2771 -0.0049 35 1 8.9360 2.7341 -0.0036 36 1 6.7844 3.8863 -0.0018 37 1 4.4056 4.4921 -0.5134 38 1 2.7485 3.8421 -0.5129 39 1 4.9437 3.8240 2.8859 40 1 5.6409 4.3439 1.3261 41 1 5.3338 6.0337 3.5143 42 1 5.3584 6.6099 1.8170 43 1 3.1992 6.2416 4.6571 44 1 4.8166 8.8423 5.0168 45 1 2.9020 6.1111 0.5130 46 1 1.7036 5.3376 1.5950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895079874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:31 Heat of formation + Delta-G solvation = -82.275732 kcal Electronic energy + Delta-G solvation = -30770.124578 eV Core-core repulsion = 26624.614349 eV Total energy + Delta-G solvation = -4145.510229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.79002 -41.10980 -40.02439 -37.93276 -37.51648 -36.65293 -34.17994 -33.75698 -31.62169 -30.92647 -29.99773 -29.85650 -28.65027 -27.19150 -25.64977 -25.03822 -23.16842 -22.25450 -21.86284 -21.39067 -20.20752 -19.41842 -18.96487 -18.47492 -17.66002 -17.54112 -17.11723 -16.87498 -16.81697 -16.26675 -15.81210 -15.57835 -15.41080 -15.20195 -14.87149 -14.70988 -14.41251 -14.30017 -14.24253 -13.85291 -13.68402 -13.23436 -13.12615 -13.06789 -12.87352 -12.76453 -12.62739 -12.59257 -12.47503 -12.23814 -12.11461 -11.87739 -11.86801 -11.79415 -11.38956 -11.11170 -10.79446 -10.58745 -10.06115 -9.27914 -9.13938 -8.73068 -8.20301 -6.36579 -0.41548 0.65513 0.89389 1.40521 1.42353 1.44993 1.52001 1.93774 2.00053 2.39036 2.91089 3.03815 3.32910 3.65862 3.70267 3.83092 3.97792 4.06348 4.08507 4.23493 4.28073 4.31883 4.32349 4.35383 4.47783 4.54818 4.57215 4.65002 4.67388 4.77392 4.79309 4.87401 4.93193 5.07741 5.14183 5.18979 5.27617 5.48546 5.49423 5.51489 5.55232 5.59770 5.71119 5.80799 5.99870 6.11174 6.23772 6.31859 6.47182 6.61187 6.68702 7.34747 7.46499 8.85121 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011310 B = 0.003576 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.123161 B = 7828.823185 C = 9758.215042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.529 3.471 4 O -0.504 6.504 5 C 0.027 3.973 6 N -0.555 5.555 7 H 0.437 0.563 8 C 0.115 3.885 9 C -0.133 4.133 10 C -0.078 4.078 11 C -0.147 4.147 12 C -0.078 4.078 13 C -0.138 4.138 14 C -0.064 4.064 15 C 0.111 3.889 16 N -0.521 5.521 17 C 0.054 3.946 18 C -0.131 4.131 19 C 0.236 3.764 20 O -0.589 6.589 21 C -0.563 4.563 22 H 0.053 0.947 23 C 0.033 3.967 24 N -0.910 5.910 25 Si 0.960 3.040 26 H -0.278 1.278 27 H -0.278 1.278 28 H -0.271 1.271 29 C 0.073 3.927 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.057 0.943 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.371 0.629 44 H 0.269 0.731 45 H 0.049 0.951 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -20.637 -11.131 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.277 6.277 3 C 0.373 3.627 4 O -0.392 6.392 5 C -0.081 4.081 6 N -0.160 5.160 7 H 0.279 0.721 8 C 0.004 3.996 9 C -0.153 4.153 10 C -0.097 4.097 11 C -0.166 4.166 12 C -0.096 4.096 13 C -0.142 4.142 14 C -0.073 4.073 15 C -0.017 4.017 16 N -0.245 5.245 17 C -0.073 4.073 18 C -0.170 4.170 19 C 0.196 3.804 20 O -0.396 6.396 21 C -0.601 4.601 22 H 0.071 0.929 23 C -0.168 4.168 24 N -0.549 5.549 25 Si 0.786 3.214 26 H -0.203 1.203 27 H -0.203 1.203 28 H -0.195 1.195 29 C -0.055 4.055 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.076 0.924 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.219 0.781 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.288 -21.197 -11.151 24.332 hybrid contribution -0.047 1.960 0.228 1.974 sum 4.241 -19.237 -10.923 22.524 Atomic orbital electron populations 1.23598 0.73787 1.06042 1.02670 1.86513 1.25680 1.31112 1.84393 1.20035 0.87116 0.82206 0.73293 1.90932 1.65665 1.36602 1.45969 1.18637 0.86650 0.87996 1.14846 1.41652 1.03140 1.08218 1.63038 0.72123 1.18599 0.85931 0.92676 1.02430 1.20455 0.87979 1.01191 1.05705 1.21343 0.98699 0.93309 0.96343 1.20989 0.97427 0.95541 1.02601 1.20594 0.91258 0.99520 0.98275 1.18195 0.92642 0.93617 1.09783 1.19438 0.92026 0.93479 1.02358 1.20719 1.00278 0.90669 0.90001 1.63478 1.16091 1.29883 1.15052 1.22815 0.90470 0.95956 0.98048 1.23024 0.99649 0.94131 1.00196 1.19777 0.88595 0.90446 0.81597 1.86152 1.65580 1.70753 1.17154 1.21797 1.33156 0.92450 1.12714 0.92894 1.25679 0.93506 1.03218 0.94409 1.69835 1.33550 1.36491 1.15009 0.85533 0.77751 0.79717 0.78441 1.20339 1.20282 1.19522 1.22760 0.97354 0.88411 0.96949 0.91568 0.84178 0.92443 0.82697 0.81932 0.83705 0.86531 0.93758 0.89755 0.93214 0.91407 0.92461 0.93417 0.78101 0.92186 0.93236 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.57 113.37 1.20 1.74 16 2 O -0.36 -8.30 10.57 -57.58 -0.61 -8.91 16 3 C 0.53 16.02 7.94 70.09 0.56 16.57 16 4 O -0.50 -18.56 14.36 19.61 0.28 -18.28 16 5 C 0.03 0.81 6.99 39.88 0.28 1.09 16 6 N -0.55 -12.25 6.19 -177.22 -1.10 -13.35 16 7 H 0.44 6.62 8.96 -92.71 -0.83 5.79 16 8 C 0.11 2.65 7.25 39.14 0.28 2.93 16 9 C -0.13 -2.19 10.08 22.37 0.23 -1.97 16 10 C -0.08 -1.18 10.01 22.30 0.22 -0.96 16 11 C -0.15 -2.82 9.96 22.02 0.22 -2.60 16 12 C -0.08 -2.00 8.85 22.31 0.20 -1.81 16 13 C -0.14 -3.95 5.72 -21.36 -0.12 -4.07 16 14 C -0.06 -2.08 5.27 -19.58 -0.10 -2.19 16 15 C 0.11 4.13 4.43 85.56 0.38 4.51 16 16 N -0.52 -22.64 5.15 -890.10 -4.58 -27.22 16 17 C 0.05 2.32 6.34 86.64 0.55 2.87 16 18 C -0.13 -6.40 5.37 31.77 0.17 -6.23 16 19 C 0.24 12.58 0.87 -10.16 -0.01 12.58 16 20 O -0.59 -33.43 13.16 -148.98 -1.96 -35.39 16 21 C -0.56 -31.74 8.27 25.60 0.21 -31.53 16 22 H 0.05 2.98 7.79 -2.91 -0.02 2.96 16 23 C 0.03 1.78 5.29 84.65 0.45 2.23 16 24 N -0.91 -50.05 10.75 21.45 0.23 -49.82 16 25 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 C 0.07 3.53 5.86 86.77 0.51 4.04 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.12 3.12 6.65 -2.91 -0.02 3.10 16 37 H 0.04 1.58 7.96 -2.39 -0.02 1.56 16 38 H 0.08 3.26 6.25 -2.39 -0.01 3.24 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.07 2.53 4.05 -2.38 -0.01 2.52 16 41 H 0.06 2.97 7.54 -2.39 -0.02 2.96 16 42 H 0.05 2.34 8.04 -2.39 -0.02 2.32 16 43 H 0.37 21.06 7.56 -74.06 -0.56 20.50 16 44 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 45 H 0.05 2.31 7.70 -2.38 -0.02 2.29 16 46 H 0.05 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -70.26 375.78 -0.84 -71.10 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.35 Total: 39.35 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 5.22 Total: -2.79 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -5.45 Total: -90.38 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -2.29 Total: -62.58 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.26 -0.84 -71.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895079874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.174 kcal (2) G-P(sol) polarization free energy of solvation -70.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds