Wall clock time and date at job start Wed Apr 1 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35903 * 117.00023 * 2 1 4 4 C 1.38728 * 120.05973 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94633 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05794 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94552 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47162 * 90.00669 * 7 6 5 9 9 C 1.34779 * 120.00491 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99450 * 359.97438 * 9 8 7 11 11 C 1.47191 * 120.00239 * 179.97438 * 9 8 7 12 12 C 1.34763 * 119.99987 * 219.58842 * 11 9 8 13 13 C 1.47066 * 119.99687 * 352.32757 * 12 11 9 14 14 O 1.21679 * 119.99940 * 36.89063 * 13 12 11 15 15 N 1.34778 * 120.00024 * 216.88630 * 13 12 11 16 16 C 1.36063 * 119.99976 * 173.81443 * 15 13 12 17 17 H 1.07999 * 120.00172 * 11.90575 * 16 15 13 18 18 C 1.39646 * 119.99768 * 191.90289 * 16 15 13 19 19 N 1.30985 * 120.00008 * 9.14258 * 18 16 15 20 20 Si 1.86794 * 120.00112 * 189.13393 * 18 16 15 21 21 H 1.48504 * 109.47076 * 60.00535 * 20 18 16 22 22 H 1.48496 * 109.47460 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47530 * 300.00651 * 20 18 16 24 24 C 1.46498 * 119.99777 * 353.81500 * 15 13 12 25 25 C 1.53000 * 117.50300 * 306.35523 * 24 15 13 26 26 C 1.53001 * 117.49909 * 237.69631 * 24 15 13 27 27 C 1.38267 * 120.10930 * 0.25791 * 6 5 4 28 28 C 1.38152 * 120.05541 * 359.45148 * 27 6 5 29 29 H 1.09000 * 109.47467 * 60.00285 * 1 2 3 30 30 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47417 * 299.99743 * 1 2 3 32 32 H 1.07999 * 120.02759 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.97237 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47114 * 330.00457 * 7 6 5 35 35 H 1.08999 * 109.46904 * 210.00301 * 7 6 5 36 36 H 0.97007 * 119.99921 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.00058 * 39.59048 * 11 9 8 38 38 H 1.07990 * 120.00006 * 172.05168 * 12 11 9 39 39 H 0.97004 * 120.00483 * 179.97438 * 19 18 16 40 40 H 1.09004 * 115.55324 * 92.02767 * 24 15 13 41 41 H 1.09003 * 117.49526 * 0.02562 * 25 24 15 42 42 H 1.08994 * 117.50568 * 145.01631 * 25 24 15 43 43 H 1.08996 * 117.49648 * 214.97825 * 26 24 15 44 44 H 1.08994 * 117.50037 * 359.97438 * 26 24 15 45 45 H 1.07996 * 119.97549 * 179.69699 * 27 6 5 46 46 H 1.08000 * 120.02791 * 180.25258 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0559 2.5170 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 7 4.2079 5.4548 -1.3780 9 6 4.8091 6.6358 -1.6234 10 8 5.1667 7.3396 -0.6985 11 6 5.0326 7.0737 -3.0107 12 6 6.1822 7.6925 -3.3451 13 6 7.1392 8.0815 -2.2983 14 8 7.3082 7.3630 -1.3310 15 7 7.8290 9.2339 -2.4105 16 6 8.6188 9.6565 -1.3864 17 1 8.8473 8.9882 -0.5693 18 6 9.1341 10.9544 -1.3917 19 7 8.7179 11.8207 -2.2817 20 14 10.4168 11.4553 -0.1296 21 1 11.6168 10.5924 -0.2740 22 1 10.7978 12.8740 -0.3471 23 1 9.8555 11.2978 1.2361 24 6 7.7285 10.0315 -3.6353 25 6 8.0175 9.3275 -4.9626 26 6 9.0242 10.3298 -4.3924 27 6 1.9209 3.6049 0.0070 28 6 1.2913 2.3752 0.0004 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0208 0.3801 0.0005 33 1 5.1344 2.5752 0.0011 34 1 4.9436 4.9380 0.5168 35 1 3.3577 5.7460 0.5169 36 1 3.9223 4.8935 -2.1158 37 1 4.2754 6.8992 -3.7607 38 1 6.4027 7.8986 -4.3819 39 1 9.0755 12.7224 -2.2853 40 1 6.9585 10.8030 -3.6321 41 1 8.2821 8.2707 -4.9246 42 1 7.4379 9.6359 -5.8326 43 1 9.1063 11.2973 -4.8876 44 1 9.9514 9.9331 -3.9791 45 1 1.3340 4.5114 0.0123 46 1 0.2128 2.3202 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900360201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:13 Heat of formation + Delta-G solvation = -5.644165 kcal Electronic energy + Delta-G solvation = -28952.452316 eV Core-core repulsion = 24810.265081 eV Total energy + Delta-G solvation = -4142.187234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.44520 -39.33669 -38.48217 -37.73631 -35.89296 -34.22419 -33.13912 -32.05308 -31.37036 -31.09697 -30.63175 -27.95807 -26.14932 -25.16053 -23.13872 -22.86228 -21.59931 -21.35957 -21.13319 -20.14326 -18.53986 -18.34642 -17.10672 -16.75102 -16.55385 -16.08253 -15.83395 -15.33141 -14.99610 -14.84459 -14.71419 -14.40489 -14.08953 -13.91786 -13.84315 -13.63532 -13.27830 -13.08986 -12.83976 -12.59965 -12.35173 -12.28594 -11.99282 -11.72139 -11.61174 -11.34182 -11.16866 -11.10864 -11.05248 -10.66626 -10.36627 -10.25443 -9.92437 -9.31374 -9.29023 -9.24210 -8.91246 -8.72596 -8.58594 -8.38737 -8.09835 -7.74254 -6.25389 -3.68284 1.08348 1.11632 1.77222 2.94182 3.24317 3.26629 3.31868 3.35672 3.69981 3.99028 4.13814 4.34553 4.49333 4.61043 4.68313 4.74766 4.76001 4.76545 4.89811 5.07309 5.13027 5.15773 5.18411 5.37138 5.42027 5.58347 5.61644 5.81722 5.85220 5.90190 5.93724 6.02688 6.07813 6.09991 6.25540 6.34997 6.46609 6.50121 6.63622 6.75749 6.86179 6.86982 6.99772 7.07779 7.27932 7.58957 8.00584 8.11971 8.57296 8.95821 9.28085 9.49327 10.12660 10.73408 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022415 B = 0.002021 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.878831 B =13848.700268 C =14514.737855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.153 4.153 5 C -0.060 4.060 6 C -0.136 4.136 7 C 0.169 3.831 8 N -0.735 5.735 9 C 0.541 3.459 10 O -0.490 6.490 11 C -0.195 4.195 12 C -0.088 4.088 13 C 0.459 3.541 14 O -0.565 6.565 15 N -0.407 5.407 16 C -0.296 4.296 17 H 0.105 0.895 18 C 0.031 3.969 19 N -0.865 5.865 20 Si 0.926 3.074 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.140 3.860 25 C -0.238 4.238 26 C -0.122 4.122 27 C -0.062 4.062 28 C -0.211 4.211 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.394 0.606 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.268 0.732 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.127 0.873 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 -16.332 -3.032 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.172 4.172 5 C -0.078 4.078 6 C -0.137 4.137 7 C 0.045 3.955 8 N -0.390 5.390 9 C 0.328 3.672 10 O -0.362 6.362 11 C -0.219 4.219 12 C -0.111 4.111 13 C 0.249 3.751 14 O -0.449 6.449 15 N -0.124 5.124 16 C -0.424 4.424 17 H 0.122 0.878 18 C -0.174 4.174 19 N -0.503 5.503 20 Si 0.753 3.247 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.035 3.965 25 C -0.276 4.276 26 C -0.160 4.160 27 C -0.080 4.080 28 C -0.230 4.230 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.227 0.773 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.145 0.855 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.351 -16.073 -1.853 21.627 hybrid contribution 0.130 0.337 -0.017 0.362 sum -14.221 -15.736 -1.869 21.292 Atomic orbital electron populations 1.23054 0.78386 1.03916 1.01428 1.86070 1.21411 1.27082 1.88699 1.19090 0.92424 0.84099 0.96177 1.20444 0.91306 0.98730 1.06709 1.21010 1.00344 0.90786 0.95694 1.19920 0.93626 0.95150 1.04957 1.19992 1.00038 0.90914 0.84509 1.45891 1.63841 1.21859 1.07421 1.18518 0.77381 0.81259 0.90027 1.90911 1.45956 1.53709 1.45625 1.22829 0.98978 1.04424 0.95625 1.23852 0.94470 0.92534 1.00243 1.17929 0.84642 0.84848 0.87639 1.90694 1.67767 1.52778 1.33620 1.42923 1.37925 1.18659 1.12932 1.19679 1.23739 0.97126 1.01852 0.87766 1.25320 0.98895 0.95229 0.97924 1.69818 1.41351 1.04694 1.34451 0.85992 0.80662 0.77222 0.80860 1.19964 1.20961 1.19793 1.20981 1.00399 0.94564 0.80587 1.23752 1.06907 0.98551 0.98368 1.22653 0.94703 0.97320 1.01359 1.20916 0.93906 0.97165 0.96036 1.21218 0.99990 0.92271 1.09507 0.92595 0.88274 0.92611 0.85087 0.84823 0.90715 0.91211 0.77288 0.85258 0.84796 0.92139 0.87637 0.89772 0.89351 0.89605 0.89776 0.85481 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.99 10.50 -19.43 -0.20 -3.19 16 3 C 0.13 1.28 6.69 -39.21 -0.26 1.01 16 4 C -0.15 -1.55 9.99 -39.44 -0.39 -1.95 16 5 C -0.06 -0.64 9.69 -39.61 -0.38 -1.02 16 6 C -0.14 -1.51 5.25 -104.60 -0.55 -2.06 16 7 C 0.17 2.34 5.80 -5.20 -0.03 2.31 16 8 N -0.74 -10.84 5.54 -62.65 -0.35 -11.19 16 9 C 0.54 10.62 6.76 -12.62 -0.09 10.54 16 10 O -0.49 -12.43 13.69 -19.27 -0.26 -12.69 16 11 C -0.19 -3.37 10.07 -37.18 -0.37 -3.74 16 12 C -0.09 -1.74 8.79 -37.23 -0.33 -2.07 16 13 C 0.46 11.85 6.52 -12.68 -0.08 11.77 16 14 O -0.56 -16.59 13.16 -19.34 -0.25 -16.85 16 15 N -0.41 -10.73 2.91 -109.10 -0.32 -11.05 16 16 C -0.30 -8.45 9.37 -15.15 -0.14 -8.59 16 17 H 0.10 3.18 7.21 -52.49 -0.38 2.81 16 18 C 0.03 0.82 5.03 -17.39 -0.09 0.73 16 19 N -0.86 -22.38 9.41 55.53 0.52 -21.86 16 20 Si 0.93 21.15 29.57 -169.99 -5.03 16.12 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.14 3.17 3.63 -67.93 -0.25 2.92 16 25 C -0.24 -4.26 8.05 -26.69 -0.22 -4.47 16 26 C -0.12 -2.53 8.04 -26.69 -0.21 -2.75 16 27 C -0.06 -0.60 9.69 -39.60 -0.38 -0.99 16 28 C -0.21 -1.91 9.04 -39.43 -0.36 -2.27 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.39 4.60 8.45 -40.82 -0.34 4.26 16 37 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.21 5.36 -52.49 -0.28 1.93 16 39 H 0.27 6.60 8.30 -40.82 -0.34 6.26 16 40 H 0.11 2.48 7.93 -51.93 -0.41 2.07 16 41 H 0.08 1.50 7.46 -51.93 -0.39 1.11 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 44 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -35.48 385.61 -9.51 -44.99 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.29 Total: 9.40 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.14 Total: 0.52 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.14 Total: -44.10 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.72 Total: -32.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.48 -9.51 -44.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.341 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds