Wall clock time and date at job start Wed Apr 1 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35903 * 117.00023 * 2 1 4 4 C 1.38728 * 120.05973 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94633 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05794 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94552 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47162 * 90.00669 * 7 6 5 9 9 C 1.34779 * 120.00491 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99450 * 359.97438 * 9 8 7 11 11 C 1.47191 * 120.00239 * 179.97438 * 9 8 7 12 12 C 1.34763 * 119.99987 * 219.58842 * 11 9 8 13 13 C 1.47066 * 119.99687 * 352.32757 * 12 11 9 14 14 O 1.21679 * 119.99940 * 36.89063 * 13 12 11 15 15 N 1.34778 * 120.00024 * 216.88630 * 13 12 11 16 16 C 1.36063 * 119.99976 * 173.81443 * 15 13 12 17 17 H 1.07999 * 120.00172 * 11.90575 * 16 15 13 18 18 C 1.39646 * 119.99768 * 191.90289 * 16 15 13 19 19 N 1.30985 * 120.00008 * 9.14258 * 18 16 15 20 20 Si 1.86794 * 120.00112 * 189.13393 * 18 16 15 21 21 H 1.48504 * 109.47076 * 60.00535 * 20 18 16 22 22 H 1.48496 * 109.47460 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47530 * 300.00651 * 20 18 16 24 24 C 1.46498 * 119.99777 * 353.81500 * 15 13 12 25 25 C 1.53000 * 117.50300 * 306.35523 * 24 15 13 26 26 C 1.53001 * 117.49909 * 237.69631 * 24 15 13 27 27 C 1.38267 * 120.10930 * 0.25791 * 6 5 4 28 28 C 1.38152 * 120.05541 * 359.45148 * 27 6 5 29 29 H 1.09000 * 109.47467 * 60.00285 * 1 2 3 30 30 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47417 * 299.99743 * 1 2 3 32 32 H 1.07999 * 120.02759 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.97237 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47114 * 330.00457 * 7 6 5 35 35 H 1.08999 * 109.46904 * 210.00301 * 7 6 5 36 36 H 0.97007 * 119.99921 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.00058 * 39.59048 * 11 9 8 38 38 H 1.07990 * 120.00006 * 172.05168 * 12 11 9 39 39 H 0.97004 * 120.00483 * 179.97438 * 19 18 16 40 40 H 1.09004 * 115.55324 * 92.02767 * 24 15 13 41 41 H 1.09003 * 117.49526 * 0.02562 * 25 24 15 42 42 H 1.08994 * 117.50568 * 145.01631 * 25 24 15 43 43 H 1.08996 * 117.49648 * 214.97825 * 26 24 15 44 44 H 1.08994 * 117.50037 * 359.97438 * 26 24 15 45 45 H 1.07996 * 119.97549 * 179.69699 * 27 6 5 46 46 H 1.08000 * 120.02791 * 180.25258 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0559 2.5170 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 7 4.2079 5.4548 -1.3780 9 6 4.8091 6.6358 -1.6234 10 8 5.1667 7.3396 -0.6985 11 6 5.0326 7.0737 -3.0107 12 6 6.1822 7.6925 -3.3451 13 6 7.1392 8.0815 -2.2983 14 8 7.3082 7.3630 -1.3310 15 7 7.8290 9.2339 -2.4105 16 6 8.6188 9.6565 -1.3864 17 1 8.8473 8.9882 -0.5693 18 6 9.1341 10.9544 -1.3917 19 7 8.7179 11.8207 -2.2817 20 14 10.4168 11.4553 -0.1296 21 1 11.6168 10.5924 -0.2740 22 1 10.7978 12.8740 -0.3471 23 1 9.8555 11.2978 1.2361 24 6 7.7285 10.0315 -3.6353 25 6 8.0175 9.3275 -4.9626 26 6 9.0242 10.3298 -4.3924 27 6 1.9209 3.6049 0.0070 28 6 1.2913 2.3752 0.0004 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0208 0.3801 0.0005 33 1 5.1344 2.5752 0.0011 34 1 4.9436 4.9380 0.5168 35 1 3.3577 5.7460 0.5169 36 1 3.9223 4.8935 -2.1158 37 1 4.2754 6.8992 -3.7607 38 1 6.4027 7.8986 -4.3819 39 1 9.0755 12.7224 -2.2853 40 1 6.9585 10.8030 -3.6321 41 1 8.2821 8.2707 -4.9246 42 1 7.4379 9.6359 -5.8326 43 1 9.1063 11.2973 -4.8876 44 1 9.9514 9.9331 -3.9791 45 1 1.3340 4.5114 0.0123 46 1 0.2128 2.3202 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900360201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:12 Heat of formation + Delta-G solvation = -28.867166 kcal Electronic energy + Delta-G solvation = -28953.459341 eV Core-core repulsion = 24810.265081 eV Total energy + Delta-G solvation = -4143.194259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26202 -40.92217 -40.05013 -38.66849 -37.70132 -35.55439 -34.99584 -33.67122 -33.05364 -32.14140 -31.62330 -28.60023 -27.64607 -26.60341 -24.66713 -23.64148 -23.16098 -22.92941 -22.16207 -21.77765 -20.00856 -19.11954 -18.96049 -18.44616 -17.31858 -17.11739 -17.04810 -16.64226 -16.61552 -16.22876 -16.07108 -15.75052 -15.61853 -15.19797 -14.90642 -14.71987 -14.64519 -14.44632 -14.25615 -13.90026 -13.60524 -13.52227 -13.39107 -13.04320 -13.00576 -12.81144 -12.51160 -12.32563 -12.17202 -12.13560 -12.00126 -11.76563 -11.75096 -10.98264 -10.93221 -10.53822 -10.49465 -10.10065 -10.01598 -9.92907 -9.70587 -9.18247 -8.23982 -5.79215 0.21540 0.31710 0.34914 1.36882 1.38338 1.46688 2.08851 2.24543 2.33801 2.35889 2.55785 2.89052 3.06698 3.17458 3.23905 3.71021 3.79466 3.92926 4.00122 4.05419 4.18586 4.29240 4.36931 4.41038 4.41776 4.47950 4.52558 4.57731 4.68288 4.71488 4.76788 4.77866 4.85978 5.05491 5.11454 5.20813 5.22326 5.31262 5.35010 5.42580 5.47291 5.54720 5.59165 5.61840 5.73588 6.06153 6.41540 6.57585 6.72792 7.25190 7.51575 7.55621 8.18411 8.70733 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022415 B = 0.002021 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.878831 B =13848.700268 C =14514.737855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.125 3.875 4 C -0.162 4.162 5 C -0.066 4.066 6 C -0.145 4.145 7 C 0.173 3.827 8 N -0.711 5.711 9 C 0.526 3.474 10 O -0.559 6.559 11 C -0.160 4.160 12 C -0.110 4.110 13 C 0.445 3.555 14 O -0.617 6.617 15 N -0.423 5.423 16 C -0.344 4.344 17 H 0.062 0.938 18 C 0.006 3.994 19 N -0.866 5.866 20 Si 0.979 3.021 21 H -0.273 1.273 22 H -0.262 1.262 23 H -0.284 1.284 24 C 0.110 3.890 25 C -0.187 4.187 26 C -0.130 4.130 27 C -0.059 4.059 28 C -0.206 4.206 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.197 0.803 38 H 0.175 0.825 39 H 0.273 0.727 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.141 0.859 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.374 -17.335 -5.744 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.079 3.921 4 C -0.181 4.181 5 C -0.085 4.085 6 C -0.145 4.145 7 C 0.050 3.950 8 N -0.366 5.366 9 C 0.315 3.685 10 O -0.436 6.436 11 C -0.182 4.182 12 C -0.132 4.132 13 C 0.237 3.763 14 O -0.504 6.504 15 N -0.140 5.140 16 C -0.472 4.472 17 H 0.081 0.919 18 C -0.198 4.198 19 N -0.503 5.503 20 Si 0.804 3.196 21 H -0.198 1.198 22 H -0.186 1.186 23 H -0.210 1.210 24 C 0.006 3.994 25 C -0.224 4.224 26 C -0.167 4.167 27 C -0.077 4.077 28 C -0.225 4.225 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.250 0.750 37 H 0.214 0.786 38 H 0.192 0.808 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.153 0.847 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.159 0.841 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.890 -17.108 -4.637 24.484 hybrid contribution 0.721 0.462 0.882 1.229 sum -16.169 -16.646 -3.754 23.508 Atomic orbital electron populations 1.23367 0.76309 1.05645 1.02418 1.86059 1.23606 1.26756 1.88430 1.19250 0.92499 0.84846 0.95474 1.20566 0.91971 0.98683 1.06869 1.21006 1.00307 0.91080 0.96079 1.19641 0.94302 0.93432 1.07158 1.19898 0.98828 0.92624 0.83688 1.45728 1.61693 1.20493 1.08647 1.19198 0.76766 0.81928 0.90657 1.90902 1.48935 1.56011 1.47749 1.23456 0.99053 1.00366 0.95354 1.23791 0.94128 0.95054 1.00228 1.19007 0.84743 0.84096 0.88467 1.90646 1.69268 1.54314 1.36164 1.43065 1.38041 1.19178 1.13712 1.19414 1.27276 0.97789 1.02742 0.91948 1.25889 0.99830 0.94552 0.99521 1.69894 1.41155 1.04687 1.34547 0.85221 0.78451 0.77817 0.78142 1.19805 1.18643 1.21002 1.20975 1.01217 0.96026 0.81219 1.23810 1.03910 0.98066 0.96663 1.22565 0.93336 0.98986 1.01857 1.21054 0.93159 0.98230 0.95290 1.21459 1.01301 0.91386 1.08344 0.91449 0.86389 0.91665 0.84268 0.85220 0.93628 0.91658 0.75000 0.78616 0.80836 0.91612 0.89057 0.89267 0.84703 0.88461 0.92446 0.84083 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.55 10.50 -92.45 -0.97 -6.52 16 3 C 0.12 2.27 6.69 22.51 0.15 2.42 16 4 C -0.16 -3.15 9.99 22.36 0.22 -2.93 16 5 C -0.07 -1.40 9.69 22.25 0.22 -1.19 16 6 C -0.14 -3.15 5.25 -19.85 -0.10 -3.25 16 7 C 0.17 4.95 5.80 85.63 0.50 5.45 16 8 N -0.71 -20.51 5.54 -470.39 -2.61 -23.12 16 9 C 0.53 20.65 6.76 86.59 0.59 21.24 16 10 O -0.56 -29.81 13.69 19.44 0.27 -29.54 16 11 C -0.16 -5.07 10.07 23.83 0.24 -4.83 16 12 C -0.11 -4.17 8.79 23.79 0.21 -3.96 16 13 C 0.45 23.83 6.52 86.56 0.56 24.40 16 14 O -0.62 -38.64 13.16 19.19 0.25 -38.39 16 15 N -0.42 -23.25 2.91 -617.32 -1.80 -25.05 16 16 C -0.34 -20.95 9.37 84.38 0.79 -20.16 16 17 H 0.06 4.20 7.21 -2.91 -0.02 4.17 16 18 C 0.01 0.36 5.03 85.16 0.43 0.78 16 19 N -0.87 -45.49 9.41 21.78 0.20 -45.28 16 20 Si 0.98 44.86 29.57 68.60 2.03 46.88 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 24 C 0.11 4.97 3.63 44.99 0.16 5.13 16 25 C -0.19 -6.14 8.05 30.62 0.25 -5.90 16 26 C -0.13 -5.28 8.04 30.62 0.25 -5.03 16 27 C -0.06 -1.04 9.69 22.26 0.22 -0.82 16 28 C -0.21 -3.19 9.04 22.37 0.20 -2.99 16 29 H 0.07 0.39 7.66 -2.39 -0.02 0.38 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.41 7.66 -2.39 -0.02 0.39 16 32 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 36 H 0.41 8.69 8.45 -92.70 -0.78 7.90 16 37 H 0.20 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.17 5.04 5.36 -2.92 -0.02 5.02 16 39 H 0.27 13.44 8.30 -92.71 -0.77 12.67 16 40 H 0.09 4.31 7.93 -2.38 -0.02 4.29 16 41 H 0.09 2.89 7.46 -2.39 -0.02 2.88 16 42 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 Total: -1.00 -86.39 385.61 3.59 -82.80 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.23 Total: 28.62 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.99 Total: 9.59 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -4.20 Total: -93.45 kcal Atomic # 8 Polarization: -74.00 SS G_CDS: -0.45 Total: -74.45 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -86.39 3.59 -82.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.930 kcal (2) G-P(sol) polarization free energy of solvation -86.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds