Wall clock time and date at job start Wed Apr 1 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99979 * 2 1 4 4 H 1.48498 * 109.46738 * 239.99607 * 3 2 1 5 5 H 1.48498 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47173 * 119.99472 * 3 2 1 7 7 C 1.37881 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99865 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47166 * 175.18567 * 9 7 2 11 11 C 1.46901 * 111.00049 * 295.43180 * 10 9 7 12 12 C 1.53233 * 109.33906 * 187.25445 * 11 10 9 13 13 N 1.47085 * 108.52089 * 306.16416 * 12 11 10 14 14 C 1.34775 * 120.88086 * 231.19002 * 13 12 11 15 15 O 1.21592 * 119.99344 * 184.96770 * 14 13 12 16 16 C 1.47521 * 120.00174 * 4.96879 * 14 13 12 17 17 C 1.39439 * 120.24994 * 324.81268 * 16 14 13 18 18 C 1.38283 * 120.28254 * 179.74293 * 17 16 14 19 19 C 1.37878 * 120.72702 * 0.49646 * 18 17 16 20 20 C 1.39676 * 120.10383 * 359.48835 * 19 18 17 21 21 N 1.35868 * 133.50689 * 180.25022 * 20 19 18 22 22 C 1.30087 * 109.53478 * 180.02562 * 21 20 19 23 23 C 1.50698 * 124.97661 * 179.97438 * 22 21 20 24 24 O 1.42896 * 109.47339 * 180.02562 * 23 22 21 25 25 N 1.36124 * 110.04625 * 359.97438 * 22 21 20 26 26 H 0.97005 * 126.30269 * 179.97438 * 25 22 21 27 27 C 1.37510 * 107.39049 * 359.97438 * 25 22 21 28 28 C 1.47083 * 118.23188 * 51.46240 * 13 12 11 29 29 C 1.46901 * 110.99466 * 59.72908 * 10 9 7 30 30 H 0.96997 * 120.00454 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47077 * 55.19060 * 9 7 2 32 32 H 1.08997 * 109.47609 * 295.19006 * 9 7 2 33 33 H 1.08994 * 109.49177 * 67.28916 * 11 10 9 34 34 H 1.09005 * 109.48842 * 307.20879 * 11 10 9 35 35 H 1.08998 * 109.62735 * 186.45822 * 12 11 10 36 36 H 1.08995 * 109.63244 * 65.87429 * 12 11 10 37 37 H 1.07996 * 119.85424 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.63760 * 180.27905 * 18 17 16 39 39 H 1.08000 * 119.94654 * 179.75816 * 19 18 17 40 40 H 1.09007 * 109.46433 * 300.02593 * 23 22 21 41 41 H 1.08994 * 109.47021 * 60.01657 * 23 22 21 42 42 H 0.96705 * 113.99909 * 179.97438 * 24 23 22 43 43 H 1.08995 * 109.63281 * 68.25059 * 28 13 12 44 44 H 1.09004 * 109.62119 * 188.83204 * 28 13 12 45 45 H 1.08996 * 109.49272 * 292.70031 * 29 10 9 46 46 H 1.08993 * 109.49519 * 52.79042 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2014 -3.6134 -0.1142 11 6 2.8985 -3.5785 -1.4068 12 6 3.7411 -4.8488 -1.5634 13 7 4.6162 -4.9769 -0.3881 14 6 5.9417 -5.1743 -0.5310 15 8 6.6364 -5.3681 0.4480 16 6 6.5497 -5.1554 -1.8749 17 6 5.8474 -5.6557 -2.9708 18 6 6.4146 -5.6334 -4.2317 19 6 7.6827 -5.1278 -4.4250 20 6 8.4069 -4.6204 -3.3437 21 7 9.6416 -4.0666 -3.2223 22 6 9.8560 -3.7500 -1.9789 23 6 11.1170 -3.1128 -1.4547 24 8 10.9981 -2.9104 -0.0452 25 7 8.7744 -4.0787 -1.2206 26 1 8.6819 -3.9463 -0.2640 27 6 7.8369 -4.6329 -2.0602 28 6 4.0053 -4.8897 0.9470 29 6 3.1532 -3.6118 1.0048 30 1 -0.4850 0.8400 -0.0004 31 1 0.5610 -2.5210 -0.8418 32 1 0.6910 -2.5946 0.9319 33 1 3.5480 -2.7041 -1.4462 34 1 2.1670 -3.5255 -2.2132 35 1 4.3481 -4.7766 -2.4657 36 1 3.0856 -5.7173 -1.6281 37 1 4.8548 -6.0588 -2.8346 38 1 5.8596 -6.0195 -5.0739 39 1 8.1150 -5.1202 -5.4146 40 1 11.9656 -3.7662 -1.6577 41 1 11.2713 -2.1532 -1.9480 42 1 11.7757 -2.5031 0.3607 43 1 3.3748 -5.7620 1.1189 44 1 4.7873 -4.8446 1.7051 45 1 3.7992 -2.7370 0.9316 46 1 2.6066 -3.5831 1.9473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913761292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:24 Heat of formation + Delta-G solvation = -7.706387 kcal Electronic energy + Delta-G solvation = -30390.058658 eV Core-core repulsion = 26280.074750 eV Total energy + Delta-G solvation = -4109.983908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.37848 -41.37366 -39.10025 -38.51720 -37.58171 -36.09549 -34.46138 -34.21605 -32.53149 -31.32467 -31.08547 -29.80869 -28.01194 -27.25789 -25.15860 -24.72628 -23.64653 -23.25527 -22.12443 -21.83691 -20.46993 -19.19483 -18.81918 -18.39128 -18.13991 -17.43320 -17.04343 -16.92714 -16.79464 -16.55201 -16.14572 -16.03354 -15.60699 -15.45324 -15.28102 -15.04725 -14.97885 -14.84886 -14.34122 -13.84223 -13.62770 -13.23166 -13.12058 -13.03808 -12.99547 -12.87419 -12.73744 -12.55950 -12.44288 -12.18704 -11.93961 -11.87784 -11.83419 -11.66576 -11.51828 -11.25497 -10.82027 -10.64564 -9.89433 -9.44379 -9.21626 -9.09531 -8.21248 -6.39971 -0.48603 0.38663 1.27918 1.31033 1.31665 1.39919 1.68648 1.83704 1.94652 2.31456 2.54744 2.72481 3.04069 3.23109 3.29215 3.60344 3.76915 3.87416 3.98931 4.03964 4.08240 4.18060 4.26220 4.31491 4.32418 4.37192 4.43105 4.46826 4.58170 4.69504 4.71206 4.84391 4.90673 4.99206 5.13243 5.14669 5.20480 5.28760 5.31460 5.36871 5.39659 5.69197 5.75194 5.95864 6.11268 6.17616 6.31352 6.40884 6.63617 6.75553 6.79795 6.92441 7.31420 8.81058 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003313 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.373665 B = 8449.232650 C = 9375.407490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.560 4.560 8 H 0.046 0.954 9 C 0.201 3.799 10 N -0.533 5.533 11 C 0.049 3.951 12 C 0.088 3.912 13 N -0.597 5.597 14 C 0.556 3.444 15 O -0.586 6.586 16 C -0.148 4.148 17 C -0.070 4.070 18 C -0.121 4.121 19 C -0.041 4.041 20 C 0.017 3.983 21 N -0.506 5.506 22 C 0.275 3.725 23 C 0.160 3.840 24 O -0.593 6.593 25 N -0.580 5.580 26 H 0.430 0.570 27 C 0.066 3.934 28 C 0.126 3.874 29 C 0.056 3.944 30 H 0.267 0.733 31 H 0.017 0.983 32 H 0.007 0.993 33 H 0.011 0.989 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.159 0.841 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.419 0.581 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.011 0.989 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.858 -11.395 -8.402 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.599 4.599 8 H 0.064 0.936 9 C 0.075 3.925 10 N -0.256 5.256 11 C -0.080 4.080 12 C -0.033 4.033 13 N -0.328 5.328 14 C 0.346 3.654 15 O -0.469 6.469 16 C -0.154 4.154 17 C -0.089 4.089 18 C -0.141 4.141 19 C -0.060 4.060 20 C -0.101 4.101 21 N -0.229 5.229 22 C 0.008 3.992 23 C 0.081 3.919 24 O -0.404 6.404 25 N -0.190 5.190 26 H 0.270 0.730 27 C -0.047 4.047 28 C 0.003 3.997 29 C -0.074 4.074 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.025 0.975 33 H 0.029 0.971 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.195 0.805 38 H 0.201 0.799 39 H 0.177 0.823 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.273 0.727 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.029 0.971 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.758 -11.955 -8.656 23.869 hybrid contribution 0.447 2.397 1.775 3.016 sum 19.205 -9.558 -6.881 22.529 Atomic orbital electron populations 1.70016 1.07226 1.28000 1.50668 1.25677 0.95542 1.02333 0.94495 0.85771 0.78617 0.79658 0.78618 1.19888 1.20102 1.20106 1.21902 0.92903 0.93356 1.51736 0.93593 1.19429 0.91037 0.86129 0.95915 1.62466 1.16746 1.44479 1.01938 1.22332 0.96737 0.96100 0.92858 1.23065 0.92818 0.98607 0.88854 1.48137 1.06378 1.69450 1.08799 1.18577 0.81773 0.76037 0.88990 1.90707 1.62184 1.52390 1.41598 1.18845 0.93014 1.09250 0.94305 1.21958 0.99842 0.96012 0.91102 1.21353 0.94539 1.00472 0.97733 1.20883 0.93566 0.94239 0.97359 1.19468 0.92348 1.05162 0.93089 1.70300 1.16166 1.20055 1.16381 1.24175 0.90965 0.97550 0.86553 1.20527 0.88757 1.00700 0.81933 1.86321 1.47908 1.85943 1.20261 1.43007 1.13578 1.50438 1.11978 0.73020 1.18929 0.92084 1.01515 0.92168 1.21829 0.96014 0.98018 0.83811 1.22293 0.93968 0.95479 0.95644 0.92417 0.96457 0.97497 0.97109 0.89448 0.85171 0.87462 0.80534 0.79882 0.82327 0.87324 0.87768 0.72745 0.88873 0.89918 0.97072 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 13.29 21.45 0.28 -53.49 16 2 C 0.02 1.11 5.46 84.66 0.46 1.57 16 3 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.56 -30.87 7.76 25.60 0.20 -30.67 16 8 H 0.05 2.58 5.88 -2.91 -0.02 2.56 16 9 C 0.20 10.24 5.11 85.56 0.44 10.68 16 10 N -0.53 -21.72 4.83 -898.87 -4.34 -26.06 16 11 C 0.05 1.73 5.24 86.38 0.45 2.19 16 12 C 0.09 2.26 5.11 86.35 0.44 2.70 16 13 N -0.60 -18.33 3.00 -820.81 -2.47 -20.79 16 14 C 0.56 18.31 7.42 86.69 0.64 18.96 16 15 O -0.59 -22.66 15.76 -4.00 -0.06 -22.72 16 16 C -0.15 -4.20 5.52 -20.08 -0.11 -4.31 16 17 C -0.07 -1.37 7.44 22.57 0.17 -1.20 16 18 C -0.12 -1.85 9.99 22.19 0.22 -1.63 16 19 C -0.04 -0.81 10.09 22.53 0.23 -0.58 16 20 C 0.02 0.48 7.22 39.40 0.28 0.76 16 21 N -0.51 -13.87 11.28 -179.95 -2.03 -15.90 16 22 C 0.27 6.88 7.91 137.90 1.09 7.97 16 23 C 0.16 2.28 7.67 71.24 0.55 2.83 16 24 O -0.59 -8.61 13.10 -148.98 -1.95 -10.57 16 25 N -0.58 -17.06 5.92 -178.62 -1.06 -18.12 16 26 H 0.43 13.13 8.04 -92.70 -0.75 12.38 16 27 C 0.07 2.01 6.88 39.26 0.27 2.28 16 28 C 0.13 4.03 6.61 86.50 0.57 4.60 16 29 C 0.06 2.16 5.18 86.54 0.45 2.60 16 30 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.01 0.44 7.09 -2.39 -0.02 0.43 16 34 H 0.09 2.96 8.06 -2.38 -0.02 2.94 16 35 H 0.13 2.74 3.64 -2.47 -0.01 2.73 16 36 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.18 2.52 5.41 -2.91 -0.02 2.51 16 38 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.42 1.33 9.12 -74.05 -0.68 0.66 16 43 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.08 2.74 7.09 -2.38 -0.02 2.73 16 45 H 0.01 0.50 6.63 -2.39 -0.02 0.48 16 46 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 Total: -1.00 -78.66 370.92 -3.61 -82.27 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.36 Total: 20.40 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.35 Total: 18.75 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -9.61 Total: -134.36 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -2.02 Total: -33.28 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -78.66 -3.61 -82.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913761292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.562 kcal (2) G-P(sol) polarization free energy of solvation -78.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds