Wall clock time and date at job start Wed Apr 1 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99723 * 2 1 4 4 C 1.53003 * 109.47263 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47010 * 65.71630 * 4 3 2 6 6 C 1.36939 * 119.99521 * 93.56578 * 5 4 3 7 7 H 1.08004 * 119.99583 * 216.58100 * 6 5 4 8 8 C 1.38810 * 120.00119 * 36.57902 * 6 5 4 9 9 N 1.31622 * 119.99657 * 214.01710 * 8 6 5 10 10 Si 1.86797 * 120.00280 * 34.02050 * 8 6 5 11 11 H 1.48500 * 109.47400 * 94.84037 * 10 8 6 12 12 H 1.48498 * 109.47155 * 214.84572 * 10 8 6 13 13 H 1.48505 * 109.46621 * 334.84381 * 10 8 6 14 14 C 1.46493 * 120.00489 * 273.56450 * 5 4 3 15 15 C 1.50700 * 109.47220 * 264.27403 * 14 5 4 16 16 C 1.36223 * 119.89177 * 261.22197 * 15 14 5 17 17 C 1.38951 * 121.24800 * 179.97438 * 16 15 14 18 18 C 1.38754 * 120.52609 * 0.02562 * 17 16 15 19 19 C 1.47414 * 120.39534 * 179.97438 * 18 17 16 20 20 O 1.21506 * 120.00068 * 185.00512 * 19 18 17 21 21 O 1.34764 * 119.99411 * 4.99382 * 19 18 17 22 22 C 1.45200 * 116.99625 * 180.02562 * 21 19 18 23 23 C 1.41634 * 119.21710 * 359.97438 * 18 17 16 24 24 C 1.40453 * 121.33673 * 180.02562 * 23 18 17 25 25 C 1.36685 * 118.16847 * 179.17609 * 24 23 18 26 26 C 1.39335 * 119.85963 * 0.79164 * 25 24 23 27 27 N 1.31066 * 121.71005 * 359.43794 * 26 25 24 28 28 C 1.33686 * 121.33994 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46831 * 60.00889 * 1 2 3 30 30 H 1.08999 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47363 * 300.00413 * 1 2 3 32 32 H 1.08997 * 109.47344 * 59.99799 * 3 2 1 33 33 H 1.09003 * 109.47121 * 299.99428 * 3 2 1 34 34 H 1.09003 * 109.46709 * 305.71968 * 4 3 2 35 35 H 1.08993 * 109.47170 * 185.72238 * 4 3 2 36 36 H 0.97000 * 119.99731 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46793 * 24.27096 * 14 5 4 38 38 H 1.08995 * 109.47385 * 144.27063 * 14 5 4 39 39 H 1.08001 * 119.37169 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.73287 * 180.02562 * 17 16 15 41 41 H 1.09003 * 109.47310 * 300.00141 * 22 21 19 42 42 H 1.09007 * 109.47357 * 59.99916 * 22 21 19 43 43 H 1.08998 * 109.47269 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.91359 * 359.97184 * 24 23 18 45 45 H 1.08001 * 120.07180 * 180.24391 * 25 24 23 46 46 H 1.08002 * 119.14789 * 179.45387 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5797 -1.2581 6 6 4.3401 1.3771 -2.3108 7 1 4.1039 1.0777 -3.3213 8 6 5.0109 2.5701 -2.0792 9 7 4.7958 3.6081 -2.8594 10 14 6.2188 2.7024 -0.6606 11 1 7.5933 2.4325 -1.1538 12 1 6.1590 4.0702 -0.0854 13 1 5.8644 1.7096 0.3854 14 6 4.0330 -0.8782 -1.3906 15 6 5.4331 -1.3562 -1.1039 16 6 6.2817 -1.6286 -2.1341 17 6 7.5786 -2.0703 -1.9021 18 6 8.0421 -2.2458 -0.6061 19 6 9.4183 -2.7150 -0.3633 20 8 9.7880 -2.9533 0.7693 21 8 10.2662 -2.8799 -1.3977 22 6 11.6055 -3.3453 -1.0844 23 6 7.1774 -1.9687 0.4808 24 6 7.6004 -2.1303 1.8104 25 6 6.7181 -1.8278 2.8095 26 6 5.4344 -1.3890 2.4920 27 7 5.0433 -1.2447 1.2494 28 6 5.8617 -1.5136 0.2272 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8499 0.5581 0.8353 35 1 3.9783 2.1754 0.1031 36 1 5.2647 4.4417 -2.6978 37 1 3.3413 -1.3338 -0.6820 38 1 3.7529 -1.1616 -2.4051 39 1 5.9400 -1.4988 -3.1504 40 1 8.2309 -2.2787 -2.7372 41 1 12.0913 -2.6324 -0.4182 42 1 11.5472 -4.3179 -0.5956 43 1 12.1835 -3.4346 -2.0042 44 1 8.5996 -2.4718 2.0371 45 1 7.0125 -1.9370 3.8429 46 1 4.7436 -1.1616 3.2906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930683486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:27 Heat of formation + Delta-G solvation = -32.536022 kcal Electronic energy + Delta-G solvation = -31076.947597 eV Core-core repulsion = 26933.594244 eV Total energy + Delta-G solvation = -4143.353353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.90652 -39.80679 -37.55542 -36.81282 -36.49394 -35.50155 -33.17918 -31.78621 -30.72418 -30.22347 -28.95494 -27.79656 -26.24567 -25.68184 -24.01381 -23.31284 -23.17490 -22.26431 -21.04581 -19.91498 -18.25191 -17.22544 -17.06264 -16.81625 -16.37664 -16.24488 -15.86061 -15.49369 -15.40124 -14.84570 -14.39710 -14.33495 -14.15936 -13.98197 -13.63541 -13.56525 -13.18378 -12.99345 -12.85367 -12.64383 -12.51263 -12.16321 -11.98062 -11.82888 -11.38507 -11.31123 -11.20186 -11.00318 -10.84915 -10.80744 -10.52085 -10.33191 -10.19590 -10.13180 -9.96028 -9.65047 -9.05649 -8.88362 -8.62960 -8.44781 -7.85177 -6.95434 -6.31020 -3.43023 0.36755 1.21366 1.89172 2.71460 2.79102 3.26776 3.37709 3.40172 3.50020 4.36897 4.44964 4.45491 4.67491 4.80264 4.89761 4.99893 5.05399 5.07857 5.12436 5.19553 5.29700 5.32121 5.38957 5.50951 5.63175 5.65793 5.71541 5.78548 5.95314 6.03971 6.05861 6.12078 6.16972 6.26557 6.29693 6.33421 6.44130 6.57120 6.59983 6.62248 6.78723 6.93524 6.97933 7.03801 7.23416 7.78725 7.83352 7.84096 8.19697 8.32099 8.80931 9.49763 9.97923 10.82733 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.004398 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.553663 B = 6365.298109 C = 7361.940828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.047 3.953 4 C 0.143 3.857 5 N -0.568 5.568 6 C -0.259 4.259 7 H 0.084 0.916 8 C 0.049 3.951 9 N -0.864 5.864 10 Si 0.841 3.159 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.255 1.255 14 C 0.178 3.822 15 C -0.015 4.015 16 C -0.139 4.139 17 C -0.019 4.019 18 C -0.167 4.167 19 C 0.519 3.481 20 O -0.518 6.518 21 O -0.355 6.355 22 C 0.038 3.962 23 C -0.051 4.051 24 C -0.088 4.088 25 C -0.173 4.173 26 C 0.105 3.895 27 N -0.444 5.444 28 C 0.126 3.874 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.267 0.733 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.167 0.833 45 H 0.130 0.870 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -11.587 5.960 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C -0.031 4.031 4 C 0.018 3.982 5 N -0.284 5.284 6 C -0.387 4.387 7 H 0.102 0.898 8 C -0.156 4.156 9 N -0.501 5.501 10 Si 0.667 3.333 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.180 1.180 14 C 0.053 3.947 15 C -0.021 4.021 16 C -0.160 4.160 17 C -0.038 4.038 18 C -0.170 4.170 19 C 0.367 3.633 20 O -0.409 6.409 21 O -0.272 6.272 22 C -0.056 4.056 23 C -0.053 4.053 24 C -0.114 4.114 25 C -0.193 4.193 26 C -0.067 4.067 27 N -0.152 5.152 28 C 0.004 3.996 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.184 0.816 45 H 0.148 0.852 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.785 -11.268 5.899 13.020 hybrid contribution 1.929 0.428 1.082 2.253 sum 4.713 -10.840 6.981 13.728 Atomic orbital electron populations 1.22614 0.83165 1.01513 0.99104 1.87938 1.17781 1.28687 1.95191 1.23316 0.97085 0.83896 0.98808 1.21397 0.89498 0.97926 0.89427 1.44432 1.71919 1.00014 1.12051 1.18941 1.31403 0.99850 0.88511 0.89825 1.25544 0.97649 0.95868 0.96521 1.70030 1.39147 1.00997 1.39917 0.87405 0.83923 0.77413 0.84595 1.21428 1.21807 1.17956 1.20236 0.88899 0.85066 1.00490 1.21186 1.01961 0.89079 0.89874 1.20687 0.93077 1.02170 1.00066 1.21562 0.95447 0.91356 0.95393 1.18578 0.90723 1.13397 0.94299 1.21162 0.85840 0.73797 0.82477 1.90587 1.77791 1.49287 1.23272 1.86578 1.24169 1.78412 1.38034 1.23231 0.79953 0.99743 1.02696 1.18497 0.94007 0.99419 0.93396 1.22356 1.01911 0.95860 0.91227 1.21927 0.95358 1.01716 1.00333 1.22874 0.94437 0.95482 0.93875 1.68007 1.34963 1.12992 0.99247 1.18665 0.89134 0.98303 0.93535 0.94684 0.90646 0.95220 0.95109 0.92857 0.90608 0.92252 0.92277 0.90100 0.92390 0.84531 0.84715 0.91989 0.91973 0.88152 0.81649 0.85240 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.90 9.33 -35.23 -0.33 -7.23 16 3 C 0.05 0.91 6.28 37.16 0.23 1.14 16 4 C 0.14 3.11 4.38 -4.04 -0.02 3.09 16 5 N -0.57 -12.91 2.04 -174.61 -0.36 -13.27 16 6 C -0.26 -6.70 9.77 -15.06 -0.15 -6.84 16 7 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 8 C 0.05 1.32 5.01 -17.43 -0.09 1.23 16 9 N -0.86 -24.65 13.97 55.49 0.78 -23.87 16 10 Si 0.84 21.32 26.28 -169.99 -4.47 16.85 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.26 -6.42 5.92 56.52 0.33 -6.09 16 14 C 0.18 3.57 5.24 -5.20 -0.03 3.55 16 15 C -0.01 -0.29 5.44 -104.41 -0.57 -0.85 16 16 C -0.14 -2.43 9.53 -40.04 -0.38 -2.81 16 17 C -0.02 -0.30 9.60 -39.13 -0.38 -0.68 16 18 C -0.17 -2.92 5.90 -104.68 -0.62 -3.53 16 19 C 0.52 8.42 7.86 34.47 0.27 8.69 16 20 O -0.52 -8.84 13.19 -19.27 -0.25 -9.09 16 21 O -0.36 -4.91 9.82 -40.67 -0.40 -5.31 16 22 C 0.04 0.37 10.57 101.05 1.07 1.44 16 23 C -0.05 -0.95 5.76 -106.52 -0.61 -1.57 16 24 C -0.09 -1.49 9.29 -39.31 -0.37 -1.85 16 25 C -0.17 -2.55 10.04 -39.73 -0.40 -2.95 16 26 C 0.11 1.65 11.15 -17.47 -0.19 1.46 16 27 N -0.44 -8.40 7.31 -10.99 -0.08 -8.48 16 28 C 0.13 2.48 6.58 -84.87 -0.56 1.93 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.62 5.70 -51.93 -0.30 1.32 16 35 H 0.06 1.38 4.49 -51.93 -0.23 1.15 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.08 1.62 6.61 -51.93 -0.34 1.28 16 38 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 39 H 0.14 2.17 8.00 -52.49 -0.42 1.75 16 40 H 0.14 1.80 7.60 -52.49 -0.40 1.41 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.17 2.75 4.96 -52.51 -0.26 2.49 16 45 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -31.39 378.37 -7.29 -38.68 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.21 Total: 2.98 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.67 Total: 3.03 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.34 Total: -45.61 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.98 Total: -21.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.47 Total: 16.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.39 -7.29 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930683486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.144 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds